mRNA_M-pyrifera_M_contig110231.2143.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110231.2143.1
Unique NamemRNA_M-pyrifera_M_contig110231.2143.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig110231.2143.1 vs. uniprot
Match: A0A072PV30_9EURO (Utp12 domain-containing protein n=1 Tax=Exophiala aquamarina CBS 119918 TaxID=1182545 RepID=A0A072PV30_9EURO)

HSP 1 Score: 69.3 bits (168), Expect = 2.670e-12
Identity = 31/61 (50.82%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:    1 DCDRFQLVQELRGHVGPVWSVAVGGRFGEWLATGGADGSLRLWARTEEQVFLQEERDEDLE 183
            D D+F+ +Q+L GH G +W++AV G  GE+L T   D S+R+WA+T+EQ+FL+EER+++LE
Sbjct: 1005 DGDKFEQIQKLDGHHGEIWAMAVAGS-GEFLVTASHDKSIRIWAQTDEQIFLEEEREKELE 1064
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BLAST of mRNA_M-pyrifera_M_contig110231.2143.1 vs. uniprot
Match: W7T9A4_9STRA (Beta transducin trp-asp domain-containing n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9A4_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 4.490e-12
Identity = 33/61 (54.10%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    1 DCDRFQLVQELRGHVGPVWSVAVGGRFGEWLATGGADGSLRLWARTEEQVFLQEERDEDLE 183
            D D F+L+   RGH G VW++ V G  GE LATGGAD S+R+W R+++QVF++EER  +LE
Sbjct:   25 DADSFELILTHRGHAGEVWAMGVEGG-GEVLATGGADRSVRVWERSDDQVFVEEERQRELE 84
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BLAST of mRNA_M-pyrifera_M_contig110231.2143.1 vs. uniprot
Match: A0A316ZFB1_9BASI (WD40 repeat-like protein n=1 Tax=Tilletiopsis washingtonensis TaxID=58919 RepID=A0A316ZFB1_9BASI)

HSP 1 Score: 68.6 bits (166), Expect = 4.980e-12
Identity = 33/61 (54.10%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    1 DCDRFQLVQELRGHVGPVWSVAVGGRFGEWLATGGADGSLRLWARTEEQVFLQEERDEDLE 183
            D DRF+L+Q L GH G VW+VA G R G    T GAD S+R+W +T+E +FL+EER+++LE
Sbjct:  737 DGDRFELIQTLEGHHGEVWAVAAG-RKGTLAVTAGADRSIRVWEKTDEPLFLEEEREKELE 796
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BLAST of mRNA_M-pyrifera_M_contig110231.2143.1 vs. uniprot
Match: A0A5C3F8U1_9BASI (Related to DIP2 - Dom34p-interacting protein n=1 Tax=Pseudozyma flocculosa TaxID=84751 RepID=A0A5C3F8U1_9BASI)

HSP 1 Score: 68.6 bits (166), Expect = 4.990e-12
Identity = 32/61 (52.46%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    1 DCDRFQLVQELRGHVGPVWSVAVGGRFGEWLATGGADGSLRLWARTEEQVFLQEERDEDLE 183
            D DRF+L+Q+L GH G VW+V  G R G+ + T GAD S+R W +T+E +FL+EER+ +LE
Sbjct:  759 DGDRFELIQQLEGHHGEVWAVTPGHR-GQMVVTAGADRSIRTWEKTDEPLFLEEERERELE 818
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BLAST of mRNA_M-pyrifera_M_contig110231.2143.1 vs. uniprot
Match: A0A0P1BID2_9BASI (WD40-repeat-containing subunit of the 18S rRNA processing complex n=2 Tax=Ceraceosorus TaxID=401624 RepID=A0A0P1BID2_9BASI)

HSP 1 Score: 68.2 bits (165), Expect = 6.810e-12
Identity = 32/61 (52.46%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:    1 DCDRFQLVQELRGHVGPVWSVAVGGRFGEWLATGGADGSLRLWARTEEQVFLQEERDEDLE 183
            D DRF+L+Q L GH G VW+VA G + G    T GAD S+R+W +TEE +FL+EER+ ++E
Sbjct:  760 DGDRFELIQTLEGHHGEVWAVAAGHK-GNMAVTAGADRSIRVWEKTEEPLFLEEEREREME 819
[Close]
BLAST of mRNA_M-pyrifera_M_contig110231.2143.1 vs. uniprot
Match: A0A177BUA3_9PLEO (WD40 repeat-like protein n=1 Tax=Paraphaeosphaeria sporulosa TaxID=1460663 RepID=A0A177BUA3_9PLEO)

HSP 1 Score: 67.8 bits (164), Expect = 9.300e-12
Identity = 28/61 (45.90%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:    1 DCDRFQLVQELRGHVGPVWSVAVGGRFGEWLATGGADGSLRLWARTEEQVFLQEERDEDLE 183
            D D+F+L+Q+LRGH G +W++ +  R G+++ T   D S+R+W RT+E +FL+EER+++LE
Sbjct:  688 DADKFELIQKLRGHHGEIWAMTMS-RTGDFVVTASHDKSMRIWTRTDEPIFLEEEREKELE 747
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BLAST of mRNA_M-pyrifera_M_contig110231.2143.1 vs. uniprot
Match: I2G5V6_USTH4 (Related to DIP2-Dom34p-interacting protein n=4 Tax=Ustilago TaxID=5269 RepID=I2G5V6_USTH4)

HSP 1 Score: 67.8 bits (164), Expect = 9.310e-12
Identity = 32/61 (52.46%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    1 DCDRFQLVQELRGHVGPVWSVAVGGRFGEWLATGGADGSLRLWARTEEQVFLQEERDEDLE 183
            D DRFQL+Q+L GH G VW+VA G   G+ + T GAD S+R W +T+E +FL+EER+ ++E
Sbjct:  762 DGDRFQLIQQLEGHHGEVWAVAPG-HSGKVVVTAGADRSIRTWEKTDEPLFLEEEREREME 821
[Close]
BLAST of mRNA_M-pyrifera_M_contig110231.2143.1 vs. uniprot
Match: A0A8K0JHW2_9TREE (Uncharacterized protein n=1 Tax=Filobasidium floriforme TaxID=5210 RepID=A0A8K0JHW2_9TREE)

HSP 1 Score: 67.8 bits (164), Expect = 9.310e-12
Identity = 29/61 (47.54%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    1 DCDRFQLVQELRGHVGPVWSVAVGGRFGEWLATGGADGSLRLWARTEEQVFLQEERDEDLE 183
            D D+F L+Q LRGH   +WS+A+   FG+++ TGG D  +R+W RTE+ +FL+EER+ ++E
Sbjct:  757 DGDKFDLIQTLRGHHSEIWSLALS-HFGDFVVTGGGDRGIRVWERTEDPLFLEEEREREME 816
[Close]
BLAST of mRNA_M-pyrifera_M_contig110231.2143.1 vs. uniprot
Match: A0A6A5TH14_9PLEO (WD40 repeat-like protein n=1 Tax=Byssothecium circinans TaxID=147558 RepID=A0A6A5TH14_9PLEO)

HSP 1 Score: 67.4 bits (163), Expect = 1.270e-11
Identity = 29/61 (47.54%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:    1 DCDRFQLVQELRGHVGPVWSVAVGGRFGEWLATGGADGSLRLWARTEEQVFLQEERDEDLE 183
            D D+F+ +Q LRGH G VW++AV  R G+++ T   D S+R+W++T+E +FL+EER+++LE
Sbjct:  691 DADKFEQIQRLRGHHGEVWAMAVA-RTGDFVVTASHDKSIRIWSKTDEPIFLEEEREKELE 750
[Close]
BLAST of mRNA_M-pyrifera_M_contig110231.2143.1 vs. uniprot
Match: A0A7J6MLL7_PERCH (Dip2/Utp12 protein n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6MLL7_PERCH)

HSP 1 Score: 67.0 bits (162), Expect = 1.730e-11
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:    1 DCDRFQLVQELRGHVGPVWSVAVGGRFGEWLATGGADGSLRLWARTEEQVFLQEERDEDL 180
            DCDR + +  L GH G VWSVA     G  +ATGGAD S+RLW RT+EQ+F++EE++E L
Sbjct:  557 DCDRSEEIASLPGHNGDVWSVACDAD-GALIATGGADRSIRLWKRTDEQMFIEEEQEEAL 615
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110231.2143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A072PV30_9EURO2.670e-1250.82Utp12 domain-containing protein n=1 Tax=Exophiala ... [more]
W7T9A4_9STRA4.490e-1254.10Beta transducin trp-asp domain-containing n=1 Tax=... [more]
A0A316ZFB1_9BASI4.980e-1254.10WD40 repeat-like protein n=1 Tax=Tilletiopsis wash... [more]
A0A5C3F8U1_9BASI4.990e-1252.46Related to DIP2 - Dom34p-interacting protein n=1 T... [more]
A0A0P1BID2_9BASI6.810e-1252.46WD40-repeat-containing subunit of the 18S rRNA pro... [more]
A0A177BUA3_9PLEO9.300e-1245.90WD40 repeat-like protein n=1 Tax=Paraphaeosphaeria... [more]
I2G5V6_USTH49.310e-1252.46Related to DIP2-Dom34p-interacting protein n=4 Tax... [more]
A0A8K0JHW2_9TREE9.310e-1247.54Uncharacterized protein n=1 Tax=Filobasidium flori... [more]
A0A6A5TH14_9PLEO1.270e-1147.54WD40 repeat-like protein n=1 Tax=Byssothecium circ... [more]
A0A7J6MLL7_PERCH1.730e-1155.00Dip2/Utp12 protein n=1 Tax=Perkinsus chesapeaki Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110231contigM-pyrifera_M_contig110231:3..185 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score68.2
Seed ortholog evalue1.5e-09
Seed eggNOG ortholog84751.XP_007878110.1
Preferred nameDIP2
KEGG koko:K14556
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034388,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.Dip2/Utp12 Family
EggNOG OGs38HWQ@33154,3N1S9@452284,3NWQD@4751,3UZ7X@5204,KOG0306@1,KOG0306@2759
COG Functional cat.A
Best tax levelUstilaginomycotina
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons1
Model size183
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815613.596108-CDS-M-pyrifera_M_contig110231:2..1851622815613.596108-CDS-M-pyrifera_M_contig110231:2..185Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110231 3..185 +
1692277487.8166308-CDS-M-pyrifera_M_contig110231:2..1851692277487.8166308-CDS-M-pyrifera_M_contig110231:2..185Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110231 3..185 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110231.2143.1prot_M-pyrifera_M_contig110231.2143.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110231 3..185 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110231.2143.1

>prot_M-pyrifera_M_contig110231.2143.1 ID=prot_M-pyrifera_M_contig110231.2143.1|Name=mRNA_M-pyrifera_M_contig110231.2143.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=61bp
DCDRFQLVQELRGHVGPVWSVAVGGRFGEWLATGGADGSLRLWARTEEQV
FLQEERDEDLE
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mRNA from alignment at M-pyrifera_M_contig110231:3..185+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110231.2143.1 ID=mRNA_M-pyrifera_M_contig110231.2143.1|Name=mRNA_M-pyrifera_M_contig110231.2143.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=183bp|location=Sequence derived from alignment at M-pyrifera_M_contig110231:3..185+ (Macrocystis pyrifera P11B4 male)
GACTGTGACCGGTTCCAGCTGGTGCAGGAATTGCGAGGTCACGTGGGTCC
CGTGTGGTCCGTGGCGGTTGGAGGGCGGTTCGGAGAGTGGTTGGCTACGG
GAGGCGCAGATGGCTCGTTGCGGCTGTGGGCGAGGACCGAGGAGCAGGTG
TTCTTGCAGGAGGAGCGAGACGAGGACCTGGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110231:3..185+

>mRNA_M-pyrifera_M_contig110231.2143.1 ID=mRNA_M-pyrifera_M_contig110231.2143.1|Name=mRNA_M-pyrifera_M_contig110231.2143.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig110231:3..185+ (Macrocystis pyrifera P11B4 male)
GACTGTGACCGGTTCCAGCTGGTGCAGGAATTGCGAGGTCACGTGGGTCC
CGTGTGGTCCGTGGCGGTTGGAGGGCGGTTCGGAGAGTGGTTGGCTACGG
GAGGCGCAGATGGCTCGTTGCGGCTGTGGGCGAGGACCGAGGAGCAGGTG
TTCTTGCAGGAGGAGCGAGACGAGGACCTGGAAGACTGTGACCGGTTCCA
GCTGGTGCAGGAATTGCGAGGTCACGTGGGTCCCGTGTGGTCCGTGGCGG
TTGGAGGGCGGTTCGGAGAGTGGTTGGCTACGGGAGGCGCAGATGGCTCG
TTGCGGCTGTGGGCGAGGACCGAGGAGCAGGTGTTCTTGCAGGAGGAGCG
AGACGAGGACCTGGAA
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