mRNA_M-pyrifera_M_contig110199.2130.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110199.2130.1
Unique NamemRNA_M-pyrifera_M_contig110199.2130.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig110199.2130.1 vs. uniprot
Match: D1J7B0_ECTSI (Uncharacterized protein Escp152 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J7B0_ECTSI)

HSP 1 Score: 197 bits (502), Expect = 1.690e-58
Identity = 101/120 (84.17%), Postives = 108/120 (90.00%), Query Frame = 1
Query:    1 RETDRILFEAENFPGEGEVYSFLESRDMSVMDKTLLKKGQDVKIISMGLADFLEFWNNPTTKTGELLFIPSSKHLNLNKRKSPVRSKKPIDPFYDYQQKFYESTKKETESYTYEIIVSPD 360
            RETD +LFEAE FPGE E YSFLESRDMSV+D+ LLKK QDVKIISMGLADFLEFWNNPTTKTGELLFIPSSKH  LNK + PVRSKK IDPFY+YQQKFY STKK+TE+YTYEIIVSPD
Sbjct:  426 RETDCLLFEAEYFPGEREAYSFLESRDMSVIDEALLKKSQDVKIISMGLADFLEFWNNPTTKTGELLFIPSSKH--LNKSELPVRSKKRIDPFYEYQQKFYGSTKKDTENYTYEIIVSPD 543          
BLAST of mRNA_M-pyrifera_M_contig110199.2130.1 vs. uniprot
Match: A0A344PFC3_9PHAE (Uncharacterized protein n=1 Tax=Endarachne binghamiae TaxID=698476 RepID=A0A344PFC3_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 5.050e-37
Identity = 74/118 (62.71%), Postives = 89/118 (75.42%), Query Frame = 1
Query:    1 RETDRILFEAENFPGEGEVYSFLESRDMSVMDKTLLKKGQDVKIISMGLADFLEFWNNPTTKTGELLFIPSSKHLNLNKRKSPVRSKKPIDPFYDYQQKFYESTKKETESYTYEIIVS 354
            RE+D + F  + FPG+ E YS+LESRD+S  DK LL+K QDVKIISMGLADFLEFWN+P  K GE+LFIPSS    LNK+K P   KK  D FYDYQQKF +S +++T+ YTYEI VS
Sbjct:  416 RESDYLAFLRDYFPGQAEEYSWLESRDISESDKGLLQKSQDVKIISMGLADFLEFWNDPGKKNGEVLFIPSS--TKLNKKKLPFSPKKSQDQFYDYQQKFRDSKRQDTKHYTYEIKVS 531          
BLAST of mRNA_M-pyrifera_M_contig110199.2130.1 vs. uniprot
Match: A0A7T8G5F4_SCYLO (Uncharacterized protein n=2 Tax=Scytosiphon TaxID=27966 RepID=A0A7T8G5F4_SCYLO)

HSP 1 Score: 134 bits (338), Expect = 9.680e-35
Identity = 71/119 (59.66%), Postives = 88/119 (73.95%), Query Frame = 1
Query:    1 RETDRILFEAENFPGEGEVYSFLESRDMSVMDKTLLKKGQDVKIISMGLADFLEFWNNPTTKTGELLFIPSSKHLNLNKRKSPVRSKKPIDPFYDYQQKFYESTKKETESYTYEIIVSP 357
            RE+D   F  + FPG+ E YS+LESR +S  DK LL+K +D+KI+SMGLADFLEFWN+PT K  E+LFIPSS+   LNK+K P  SKK  D FY+YQQKF  S  ++T+ YTYEI VSP
Sbjct:  416 RESDYWAFLRDYFPGQAEEYSWLESRYISESDKGLLQKSRDIKIVSMGLADFLEFWNDPTKKNAEVLFIPSSE--KLNKKKLPFSSKKSQDQFYNYQQKFRGSKNQDTKKYTYEIKVSP 532          
BLAST of mRNA_M-pyrifera_M_contig110199.2130.1 vs. uniprot
Match: A0A6B7EYX5_9PHAE (Uncharacterized protein n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EYX5_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 2.300e-33
Identity = 70/120 (58.33%), Postives = 83/120 (69.17%), Query Frame = 1
Query:    1 RETDRILFEAENFPGEGEVYSFLESRDMSVMDKTLLKKGQDVKIISMGLADFLEFWNNPTTKTGELLFIPSSKHLNLNKRKSPVRSKKPIDPFYDYQQKFYESTKKETESYTYEIIVSPD 360
            RE D   F    FPG+ E YS+ ESRDM+  DK LLKK Q++KIISMGL DFLEFWNNPT K GE+LFIPSS  LN  K     R++KP D FY+YQQKF +  K  TE+Y YEI +S +
Sbjct:  490 REVDYWSFLNYYFPGQQESYSWWESRDMTETDKGLLKKSQEIKIISMGLGDFLEFWNNPTIKNGEVLFIPSSTDLNTKKLSLLPRNRKPKDKFYNYQQKFRKLKKPNTENYMYEIKLSAE 609          
BLAST of mRNA_M-pyrifera_M_contig110199.2130.1 vs. uniprot
Match: A0A5A4MIP9_9PHAE (Uncharacterized protein n=1 Tax=Hapterophycus canaliculatus TaxID=2567908 RepID=A0A5A4MIP9_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 3.260e-31
Identity = 65/118 (55.08%), Postives = 84/118 (71.19%), Query Frame = 1
Query:    1 RETDRILFEAENFPGEGEVYSFLESRDMSVMDKTLLKKGQDVKIISMGLADFLEFWNNPTTKTGELLFIPSSKHLNLNKRKSPVRSKKPIDPFYDYQQKFYESTKKETESYTYEIIVS 354
            RE+D   F  + FPG+ E YS+LE+R ++  DK LLKK +D KI+SMGLADFLEFWN+P  K  ++LFIPSS    LNK+K P   KK  D FY+YQQKF +  K++T++Y YEI VS
Sbjct:  412 RESDYWAFLRDYFPGQAEEYSWLETRHITEYDKGLLKKSRDAKIVSMGLADFLEFWNDPARKNADILFIPSSD--KLNKKKLPFSPKKSQDQFYNYQQKFRDYKKQDTKNYNYEIKVS 527          
BLAST of mRNA_M-pyrifera_M_contig110199.2130.1 vs. uniprot
Match: A0A1I9LVA6_9PHAE (Uncharacterized protein n=2 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVA6_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 6.330e-31
Identity = 73/120 (60.83%), Postives = 81/120 (67.50%), Query Frame = 1
Query:    1 RETDRILFEAENFPGEGEVYSFLESRDMSVMDKTLLKKGQDVKIISMGLADFLEFWNNPTTKTGELLFIPSSKHLNLNKRKSPVRSKKPIDPFYDYQQKFYESTKKETESYTYEIIVSPD 360
            RE D  LF    FPG+ E YS+ ESRDMS  +K LLKK QDVKIISMG ADFLEFWNNPT K  E+LFIPSSK  NL K KS    KK  D  Y+YQ KF +   +  E+YTYEI VS D
Sbjct:  417 REEDYWLFLDRYFPGQAEDYSWFESRDMSKSEKVLLKKCQDVKIISMGFADFLEFWNNPTQKNSEILFIPSSK--NLKKIKS---YKKGNDRLYEYQTKFRDYKNQNLENYTYEIKVSGD 531          
BLAST of mRNA_M-pyrifera_M_contig110199.2130.1 vs. uniprot
Match: A0A8F0FBH1_ALAMR (Uncharacterized protein n=7 Tax=Alaria TaxID=2888 RepID=A0A8F0FBH1_ALAMR)

HSP 1 Score: 93.6 bits (231), Expect = 7.560e-20
Identity = 56/110 (50.91%), Postives = 69/110 (62.73%), Query Frame = 1
Query:   52 EVYSFLESRD------MSVMDKTLLKKGQDVKIISMGLADFLEFWNNPTTKTGELLFIPSSKHLNLNKRKSPVRSKKPIDPFYDYQQKFYESTKKETE--SYTYEIIVSP 357
            E++ FLE  +      +S  D  LL    +VKI+SMGL DFL FWNN  TK GE+LFIPSSK  +  K   P+ SKKP D FY+YQQKF    K++ E  SY+YEI  SP
Sbjct:  417 ELHEFLEPDERSETAYLSESDTVLLNIASNVKIVSMGLGDFLSFWNNSETKNGEILFIPSSK--SFKKINLPLISKKPKDRFYEYQQKFRGGDKQKIEDYSYSYEIKSSP 524          
BLAST of mRNA_M-pyrifera_M_contig110199.2130.1 vs. uniprot
Match: A0A5B9RGG1_9PHAE (Uncharacterized protein n=22 Tax=Laminariales TaxID=2886 RepID=A0A5B9RGG1_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 3.630e-19
Identity = 51/106 (48.11%), Postives = 65/106 (61.32%), Query Frame = 1
Query:   52 EVYSFLESRD------MSVMDKTLLKKGQDVKIISMGLADFLEFWNNPTTKTGELLFIPSSKHLNLNKRKSPVRSKKPIDPFYDYQQKFYESTKKETESYTYEIIV 351
            E++ FLE  +      +S  D  LL    +VKI+SMGL DFL FWNN  TK GE+LFIPSSK  +  K   P+ SKKP D FY+YQQKF    K++ E Y+Y   +
Sbjct:  417 ELHEFLEPDERSETAYLSESDTVLLDIASNVKIVSMGLGDFLSFWNNTETKNGEILFIPSSK--SFKKINLPLISKKPRDRFYEYQQKFRGEDKQKVEDYSYSYTI 520          
BLAST of mRNA_M-pyrifera_M_contig110199.2130.1 vs. uniprot
Match: A0A0R6M0B1_UNDPI (Uncharacterized protein n=1 Tax=Undaria pinnatifida TaxID=74381 RepID=A0A0R6M0B1_UNDPI)

HSP 1 Score: 90.1 bits (222), Expect = 1.270e-18
Identity = 56/109 (51.38%), Postives = 69/109 (63.30%), Query Frame = 1
Query:   52 EVYSFLESRD------MSVMDKTLLKKGQDVKIISMGLADFLEFWNNPTTKTGELLFIPSSKHLNLNKRKSPVRSKKPIDPFYDYQQKFY-ESTKKETE-SYTYEIIVS 354
            E+Y FL+  +      +S  D  LL    +VKI+SMGL DFL FWNN  TK GE+LFIPSSK  +  K   P+ SKKP D FY+YQQKF  E  +K TE +Y+YEI  S
Sbjct:  417 ELYEFLDPAERSETAYLSESDTVLLDIASNVKIVSMGLGDFLSFWNNNETKNGEILFIPSSK--SFKKINLPLLSKKPKDRFYEYQQKFRGEDKQKMTEYNYSYEIKSS 523          
BLAST of mRNA_M-pyrifera_M_contig110199.2130.1 vs. uniprot
Match: A0A8F0JZY5_9PHAE (Uncharacterized protein n=1 Tax=Egregia menziesii TaxID=105409 RepID=A0A8F0JZY5_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 4.450e-18
Identity = 53/109 (48.62%), Postives = 68/109 (62.39%), Query Frame = 1
Query:   52 EVYSFLESRD------MSVMDKTLLKKGQDVKIISMGLADFLEFWNNPTTKTGELLFIPSSKHLNLNKRKSPVRSKKPIDPFYDYQQKFYESTKKETE--SYTYEIIVS 354
            E++ FLE  +      +S  D  LL    +VKI+SMGL DFL FWNN  TK GE+LFIPSSK  +  K   P+ SKKP D FY+YQQKF    K++ +  +Y+YEI  S
Sbjct:  417 ELHEFLEPDERSETAYLSESDTVLLDIASNVKIVSMGLGDFLSFWNNTETKNGEILFIPSSK--SFKKINLPLISKKPRDRFYEYQQKFRGENKQKIDGHNYSYEIKSS 523          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110199.2130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D1J7B0_ECTSI1.690e-5884.17Uncharacterized protein Escp152 n=2 Tax=Ectocarpus... [more]
A0A344PFC3_9PHAE5.050e-3762.71Uncharacterized protein n=1 Tax=Endarachne bingham... [more]
A0A7T8G5F4_SCYLO9.680e-3559.66Uncharacterized protein n=2 Tax=Scytosiphon TaxID=... [more]
A0A6B7EYX5_9PHAE2.300e-3358.33Uncharacterized protein n=1 Tax=Cladosiphon okamur... [more]
A0A5A4MIP9_9PHAE3.260e-3155.08Uncharacterized protein n=1 Tax=Hapterophycus cana... [more]
A0A1I9LVA6_9PHAE6.330e-3160.83Uncharacterized protein n=2 Tax=Pleurocladia lacus... [more]
A0A8F0FBH1_ALAMR7.560e-2050.91Uncharacterized protein n=7 Tax=Alaria TaxID=2888 ... [more]
A0A5B9RGG1_9PHAE3.630e-1948.11Uncharacterized protein n=22 Tax=Laminariales TaxI... [more]
A0A0R6M0B1_UNDPI1.270e-1851.38Uncharacterized protein n=1 Tax=Undaria pinnatifid... [more]
A0A8F0JZY5_9PHAE4.450e-1848.62Uncharacterized protein n=1 Tax=Egregia menziesii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110199contigM-pyrifera_M_contig110199:238..600 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size363
Cds size363
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815612.851872-CDS-M-pyrifera_M_contig110199:237..6001622815612.851872-CDS-M-pyrifera_M_contig110199:237..600Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110199 238..600 -
1692277487.374124-CDS-M-pyrifera_M_contig110199:237..6001692277487.374124-CDS-M-pyrifera_M_contig110199:237..600Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110199 238..600 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110199.2130.1prot_M-pyrifera_M_contig110199.2130.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110199 238..600 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110199.2130.1

>prot_M-pyrifera_M_contig110199.2130.1 ID=prot_M-pyrifera_M_contig110199.2130.1|Name=mRNA_M-pyrifera_M_contig110199.2130.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp
RETDRILFEAENFPGEGEVYSFLESRDMSVMDKTLLKKGQDVKIISMGLA
DFLEFWNNPTTKTGELLFIPSSKHLNLNKRKSPVRSKKPIDPFYDYQQKF
YESTKKETESYTYEIIVSPD*
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mRNA from alignment at M-pyrifera_M_contig110199:238..600-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110199.2130.1 ID=mRNA_M-pyrifera_M_contig110199.2130.1|Name=mRNA_M-pyrifera_M_contig110199.2130.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=363bp|location=Sequence derived from alignment at M-pyrifera_M_contig110199:238..600- (Macrocystis pyrifera P11B4 male)
AGAGAAACCGACCGTATTCTATTTGAAGCAGAAAATTTTCCTGGTGAAGG AGAGGTATATAGCTTCTTAGAATCCCGGGATATGAGCGTTATGGATAAAA CACTGCTAAAAAAAGGCCAGGATGTCAAAATAATATCAATGGGATTGGCT GACTTTTTAGAATTTTGGAATAATCCTACTACAAAAACTGGTGAATTATT ATTTATACCGTCTTCAAAACATTTAAATTTAAATAAAAGGAAATCACCTG TTCGCTCTAAAAAACCTATAGACCCATTTTATGACTATCAACAAAAATTT TACGAATCTACAAAAAAAGAGACTGAAAGTTATACATATGAAATAATAGT TTCACCCGATTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110199:238..600-

>mRNA_M-pyrifera_M_contig110199.2130.1 ID=mRNA_M-pyrifera_M_contig110199.2130.1|Name=mRNA_M-pyrifera_M_contig110199.2130.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig110199:238..600- (Macrocystis pyrifera P11B4 male)
AGAGAAACCGACCGTATTCTATTTGAAGCAGAAAATTTTCCTGGTGAAGG
AGAGGTATATAGCTTCTTAGAATCCCGGGATATGAGCGTTATGGATAAAA
CACTGCTAAAAAAAGGCCAGGATGTCAAAATAATATCAATGGGATTGGCT
GACTTTTTAGAATTTTGGAATAATCCTACTACAAAAACTGGTGAATTATT
ATTTATACCGTCTTCAAAACATTTAAATTTAAATAAAAGGAAATCACCTG
TTCGCTCTAAAAAACCTATAGACCCATTTTATGACTATCAACAAAAATTT
TACGAATCTACAAAAAAAGAGACTGAAAGTTATACATATGAAATAATAGT
TTCACCCGATTAAAGAGAAACCGACCGTATTCTATTTGAAGCAGAAAATT
TTCCTGGTGAAGGAGAGGTATATAGCTTCTTAGAATCCCGGGATATGAGC
GTTATGGATAAAACACTGCTAAAAAAAGGCCAGGATGTCAAAATAATATC
AATGGGATTGGCTGACTTTTTAGAATTTTGGAATAATCCTACTACAAAAA
CTGGTGAATTATTATTTATACCGTCTTCAAAACATTTAAATTTAAATAAA
AGGAAATCACCTGTTCGCTCTAAAAAACCTATAGACCCATTTTATGACTA
TCAACAAAAATTTTACGAATCTACAAAAAAAGAGACTGAAAGTTATACAT
ATGAAATAATAGTTTCACCCGATTAA
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