mRNA_M-pyrifera_M_contig109977.2089.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109977.2089.1
Unique NamemRNA_M-pyrifera_M_contig109977.2089.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig109977.2089.1 vs. uniprot
Match: A0A835YUG4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUG4_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.570e-14
Identity = 33/60 (55.00%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:    4 VMTKKVSTEYSPGEVKDAFRVFQGTAPSGYIRVSDVVAALSTYGEETLSKEEATELVGHL 183
            VM++KV+  Y+P +VK AF+VF+G+APSGYI++  +V AL+TYG E L++E+A ELV  L
Sbjct:   80 VMSRKVNASYTPEQVKGAFKVFEGSAPSGYIKMESLVRALTTYGTEKLTEEQARELVSQL 139
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BLAST of mRNA_M-pyrifera_M_contig109977.2089.1 vs. uniprot
Match: A0A7S1GDX7_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GDX7_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.780e-14
Identity = 31/60 (51.67%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:    4 VMTKKVSTEYSPGEVKDAFRVFQGTAPSGYIRVSDVVAALSTYGEETLSKEEATELVGHL 183
            VM++KV++ Y+P +VK AF++F+GTAPSGYI+V D++ AL+TY  ET+++ +A EL+  L
Sbjct:   87 VMSRKVNSSYTPDQVKAAFKIFEGTAPSGYIKVGDLLTALTTYCSETVTEAQAAELISQL 146
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BLAST of mRNA_M-pyrifera_M_contig109977.2089.1 vs. uniprot
Match: A0A5A8EMZ9_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EMZ9_CAFRO)

HSP 1 Score: 68.2 bits (165), Expect = 1.140e-12
Identity = 31/60 (51.67%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:    4 VMTKKVSTEYSPGEVKDAFRVFQGTAPSGYIRVSDVVAALSTYGEETLSKEEATELVGHL 183
            VM++KV  +Y+P +V  AFRVF+G+AP G+I+ SD++ AL+TYG   L+ E+A ELV  L
Sbjct:   82 VMSRKVQADYTPSQVNAAFRVFEGSAPPGHIKQSDLIKALTTYGSTRLTDEQAKELVSQL 141
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BLAST of mRNA_M-pyrifera_M_contig109977.2089.1 vs. uniprot
Match: A0A812X328_9DINO (Calmodulin n=4 Tax=Sar TaxID=2698737 RepID=A0A812X328_9DINO)

HSP 1 Score: 68.2 bits (165), Expect = 1.140e-12
Identity = 31/60 (51.67%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:    4 VMTKKVSTEYSPGEVKDAFRVFQGTAPSGYIRVSDVVAALSTYGEETLSKEEATELVGHL 183
            VM++KV  +Y+P +V  AFRVF+G+AP G+I+ SD++ AL+TYG   L+ E+A ELV  L
Sbjct:   82 VMSRKVQADYTPSQVNAAFRVFEGSAPPGHIKQSDLIKALTTYGSTRLTDEQAKELVSQL 141
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BLAST of mRNA_M-pyrifera_M_contig109977.2089.1 vs. uniprot
Match: A0A0G4ERA8_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ERA8_VITBC)

HSP 1 Score: 66.6 bits (161), Expect = 4.620e-12
Identity = 32/61 (52.46%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:    1 QVMTKKVSTEYSPGEVKDAFRVFQGTAPSGYIRVSDVVAALSTYGEETLSKEEATELVGHL 183
            +VM++KV+ +Y+P EV+ AF+VF G AP G IRV+D+  AL TYG E LS++E   LV  L
Sbjct:  107 KVMSRKVNADYTPDEVRRAFKVFSGDAPEGQIRVADLEKALITYGHEKLSEDEGRTLVSQL 167
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BLAST of mRNA_M-pyrifera_M_contig109977.2089.1 vs. uniprot
Match: A0A6V1LFC1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1LFC1_HETAK)

HSP 1 Score: 65.1 bits (157), Expect = 1.200e-11
Identity = 31/60 (51.67%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:    4 VMTKKVSTEYSPGEVKDAFRVFQGTAPSGYIRVSDVVAALSTYGEETLSKEEATELVGHL 183
            VM++KV+  Y+  +VK+AFRVF+G +P GYI+V  +  AL TYG E L+ E+A ELV  L
Sbjct:   86 VMSRKVNATYTSEQVKNAFRVFEGASPPGYIKVDALAKALQTYGAEKLTDEQARELVSQL 145
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BLAST of mRNA_M-pyrifera_M_contig109977.2089.1 vs. uniprot
Match: D8LKJ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKJ0_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 2.010e-11
Identity = 28/60 (46.67%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:    4 VMTKKVSTEYSPGEVKDAFRVFQGTAPSGYIRVSDVVAALSTYGEETLSKEEATELVGHL 183
            VM++KV+  Y+  +VK AF+VF+G +P G+I++  V+ AL+TYG E L++E+A +LV  L
Sbjct:   77 VMSRKVNASYTADQVKSAFKVFEGNSPPGHIKIESVMKALTTYGSEQLTEEQAHDLVSQL 136
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BLAST of mRNA_M-pyrifera_M_contig109977.2089.1 vs. uniprot
Match: A0A7S3BQM1_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BQM1_9EUKA)

HSP 1 Score: 63.5 bits (153), Expect = 3.990e-11
Identity = 29/60 (48.33%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:    4 VMTKKVSTEYSPGEVKDAFRVFQGTAPSGYIRVSDVVAALSTYGEETLSKEEATELVGHL 183
            VM++KVST Y+P +VK AF+VF+   PSG++ ++ +  AL+TYG ETLS  +A EL+  +
Sbjct:   77 VMSRKVSTSYTPSQVKAAFKVFERDCPSGFVSMAALEQALTTYGSETLSVSDAQELLSQI 136
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BLAST of mRNA_M-pyrifera_M_contig109977.2089.1 vs. uniprot
Match: A0A7J6MKH1_PERCH (Calcium binding protein n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6MKH1_PERCH)

HSP 1 Score: 60.5 bits (145), Expect = 1.090e-9
Identity = 31/62 (50.00%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:    1 QVMTKKVSTEYSPGEVKDAFRVFQGT-APSGYIRVSDVVAALSTYGEETLSKEEATELVGHL 183
            QVM++K S ++SP EVK AF++F    AP G I + D+  AL+ YG + L+KEEA EL  HL
Sbjct:  110 QVMSRKTSADHSPDEVKSAFKLFAAPEAPDGTISLKDLEDALTNYGRDRLTKEEAQELCSHL 171
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BLAST of mRNA_M-pyrifera_M_contig109977.2089.1 vs. uniprot
Match: F0YC57_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YC57_AURAN)

HSP 1 Score: 58.9 bits (141), Expect = 2.240e-9
Identity = 28/60 (46.67%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:    4 VMTKKVSTEYSPGEVKDAFRVFQGTAPSGYIRVSDVVAALSTYGEETLSKEEATELVGHL 183
            VM++KVS  Y+  +VK+AF+VF+G APSG+I+V  ++ AL+  G + L+ E+A +LV  L
Sbjct:   72 VMSRKVSATYTADQVKNAFKVFEGDAPSGHIKVDVLIRALTNDGTDKLTDEQAHDLVSQL 131
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109977.2089.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YUG4_9STRA1.570e-1455.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1GDX7_9STRA1.780e-1451.67Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A5A8EMZ9_CAFRO1.140e-1251.67Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A812X328_9DINO1.140e-1251.67Calmodulin n=4 Tax=Sar TaxID=2698737 RepID=A0A812X... [more]
A0A0G4ERA8_VITBC4.620e-1252.46Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A6V1LFC1_HETAK1.200e-1151.67Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D8LKJ0_ECTSI2.010e-1146.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3BQM1_9EUKA3.990e-1148.33Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7J6MKH1_PERCH1.090e-950.00Calcium binding protein n=1 Tax=Perkinsus chesapea... [more]
F0YC57_AURAN2.240e-946.67Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109977contigM-pyrifera_M_contig109977:17..199 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue3.7e-08
Seed eggNOG ortholog2880.D8LKJ0
KEGG koko:K02183
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0027@2759
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Exons1
Model size183
Cds size177
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815610.4510171-CDS-M-pyrifera_M_contig109977:16..1931622815610.4510171-CDS-M-pyrifera_M_contig109977:16..193Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109977 17..193 -
1692277486.3271706-CDS-M-pyrifera_M_contig109977:16..1931692277486.3271706-CDS-M-pyrifera_M_contig109977:16..193Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109977 17..193 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815610.466389-UTR-M-pyrifera_M_contig109977:193..1991622815610.466389-UTR-M-pyrifera_M_contig109977:193..199Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig109977 194..199 -
1692277486.3409317-UTR-M-pyrifera_M_contig109977:193..1991692277486.3409317-UTR-M-pyrifera_M_contig109977:193..199Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig109977 194..199 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109977.2089.1prot_M-pyrifera_M_contig109977.2089.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109977 17..193 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109977.2089.1

>prot_M-pyrifera_M_contig109977.2089.1 ID=prot_M-pyrifera_M_contig109977.2089.1|Name=mRNA_M-pyrifera_M_contig109977.2089.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=59bp
MTKKVSTEYSPGEVKDAFRVFQGTAPSGYIRVSDVVAALSTYGEETLSKE
EATELVGHL
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mRNA from alignment at M-pyrifera_M_contig109977:17..199-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109977.2089.1 ID=mRNA_M-pyrifera_M_contig109977.2089.1|Name=mRNA_M-pyrifera_M_contig109977.2089.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=183bp|location=Sequence derived from alignment at M-pyrifera_M_contig109977:17..199- (Macrocystis pyrifera P11B4 male)
CAGGTGATGACGAAGAAAGTTTCGACCGAGTATTCTCCCGGAGAAGTGAA
GGACGCTTTCCGAGTGTTCCAGGGGACTGCTCCGTCGGGGTACATTCGAG
TGAGCGACGTGGTGGCAGCGCTGTCGACCTATGGCGAGGAGACGCTCTCC
AAGGAGGAGGCCACTGAGTTGGTGGGACACCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109977:17..199-

>mRNA_M-pyrifera_M_contig109977.2089.1 ID=mRNA_M-pyrifera_M_contig109977.2089.1|Name=mRNA_M-pyrifera_M_contig109977.2089.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig109977:17..199- (Macrocystis pyrifera P11B4 male)
ATGACGAAGAAAGTTTCGACCGAGTATTCTCCCGGAGAAGTGAAGGACGC
TTTCCGAGTGTTCCAGGGGACTGCTCCGTCGGGGTACATTCGAGTGAGCG
ACGTGGTGGCAGCGCTGTCGACCTATGGCGAGGAGACGCTCTCCAAGGAG
GAGGCCACTGAGTTGGTGGGACACCTCATGACGAAGAAAGTTTCGACCGA
GTATTCTCCCGGAGAAGTGAAGGACGCTTTCCGAGTGTTCCAGGGGACTG
CTCCGTCGGGGTACATTCGAGTGAGCGACGTGGTGGCAGCGCTGTCGACC
TATGGCGAGGAGACGCTCTCCAAGGAGGAGGCCACTGAGTTGGTGGGACA
CCTC
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