mRNA_M-pyrifera_M_contig109842.2063.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109842.2063.1
Unique NamemRNA_M-pyrifera_M_contig109842.2063.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig109842.2063.1 vs. uniprot
Match: A0A3D3RE13_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A3D3RE13_9PLAN)

HSP 1 Score: 379 bits (974), Expect = 1.030e-130
Identity = 186/199 (93.47%), Postives = 193/199 (96.98%), Query Frame = 1 
Query:    1 MSTIFPEIQFGDQNQIVKPPVWFTWAYTFGRFLVENEQALEAGLIVVTSPCQSPLIGAVGLGSLVKLLETQTNTTDNDQHFEKLFSLPTGTLVRWKPKRKARTKVFKLLKDRCREKGIKMRQVSGSRKDSNASYFLTQQAALSYVVDSEEQTDPDLAHTLSRYPGAAIIEKISQDISPEQNWRNNLDDIVFAGPTGGHS 597
            MST+FPEIQFGDQNQIVK P WFTWAY FGRFLVENEQALEAGLIVVTSPCQSPLIGAVGLG+LVKLLE QTNTTDND++FE+LFSLPTGTLVRWKPKRKARTKVFKLLKDRCR+KGIKMRQVSGSRKDSNASYFLTQQAALSYVVDS EQTDPDL H+LSRYPGAAIIEKISQDISPEQNWRNNLDDIVFAGPTGGHS
Sbjct:    1 MSTVFPEIQFGDQNQIVKSPTWFTWAYAFGRFLVENEQALEAGLIVVTSPCQSPLIGAVGLGALVKLLERQTNTTDNDKYFEQLFSLPTGTLVRWKPKRKARTKVFKLLKDRCRKKGIKMRQVSGSRKDSNASYFLTQQAALSYVVDSVEQTDPDLTHSLSRYPGAAIIEKISQDISPEQNWRNNLDDIVFAGPTGGHS 199
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109842.2063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A3D3RE13_9PLAN1.030e-13093.47Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109842contigM-pyrifera_M_contig109842:5..601 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size597
Cds size597
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815609.1900914-CDS-M-pyrifera_M_contig109842:4..6011622815609.1900914-CDS-M-pyrifera_M_contig109842:4..601Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109842 5..601 +
1692277485.7547905-CDS-M-pyrifera_M_contig109842:4..6011692277485.7547905-CDS-M-pyrifera_M_contig109842:4..601Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109842 5..601 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109842.2063.1prot_M-pyrifera_M_contig109842.2063.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109842 5..601 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109842.2063.1

>prot_M-pyrifera_M_contig109842.2063.1 ID=prot_M-pyrifera_M_contig109842.2063.1|Name=mRNA_M-pyrifera_M_contig109842.2063.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=199bp
MSTIFPEIQFGDQNQIVKPPVWFTWAYTFGRFLVENEQALEAGLIVVTSP
CQSPLIGAVGLGSLVKLLETQTNTTDNDQHFEKLFSLPTGTLVRWKPKRK
ARTKVFKLLKDRCREKGIKMRQVSGSRKDSNASYFLTQQAALSYVVDSEE
QTDPDLAHTLSRYPGAAIIEKISQDISPEQNWRNNLDDIVFAGPTGGHS
back to top

mRNA from alignment at M-pyrifera_M_contig109842:5..601+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109842.2063.1 ID=mRNA_M-pyrifera_M_contig109842.2063.1|Name=mRNA_M-pyrifera_M_contig109842.2063.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=597bp|location=Sequence derived from alignment at M-pyrifera_M_contig109842:5..601+ (Macrocystis pyrifera P11B4 male)
ATGTCGACAATCTTTCCGGAGATTCAATTCGGCGATCAGAATCAAATCGT
TAAGCCTCCTGTTTGGTTTACTTGGGCATACACATTCGGTCGCTTTCTTG
TAGAGAACGAACAAGCTTTAGAGGCTGGTCTGATTGTTGTGACAAGCCCC
TGTCAATCACCATTGATTGGAGCGGTGGGACTGGGATCATTGGTCAAACT
TCTAGAGACGCAGACAAATACGACCGATAACGATCAGCATTTTGAAAAGC
TTTTTTCTCTACCTACTGGCACTCTCGTGAGATGGAAACCAAAAAGAAAA
GCTAGAACCAAAGTCTTCAAACTGTTAAAGGATCGATGTCGTGAAAAGGG
GATCAAGATGCGACAGGTGTCAGGCTCCAGAAAGGACTCTAACGCATCCT
ATTTTCTTACCCAACAAGCTGCTCTTTCTTATGTAGTTGACTCAGAAGAA
CAGACTGATCCCGATCTGGCACATACACTGTCGCGATATCCTGGTGCAGC
GATCATTGAAAAAATATCACAAGACATTTCTCCCGAACAGAATTGGCGAA
ATAATTTAGATGACATTGTTTTCGCTGGTCCAACGGGAGGCCATTCA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig109842:5..601+

>mRNA_M-pyrifera_M_contig109842.2063.1 ID=mRNA_M-pyrifera_M_contig109842.2063.1|Name=mRNA_M-pyrifera_M_contig109842.2063.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1194bp|location=Sequence derived from alignment at M-pyrifera_M_contig109842:5..601+ (Macrocystis pyrifera P11B4 male)
ATGTCGACAATCTTTCCGGAGATTCAATTCGGCGATCAGAATCAAATCGT
TAAGCCTCCTGTTTGGTTTACTTGGGCATACACATTCGGTCGCTTTCTTG
TAGAGAACGAACAAGCTTTAGAGGCTGGTCTGATTGTTGTGACAAGCCCC
TGTCAATCACCATTGATTGGAGCGGTGGGACTGGGATCATTGGTCAAACT
TCTAGAGACGCAGACAAATACGACCGATAACGATCAGCATTTTGAAAAGC
TTTTTTCTCTACCTACTGGCACTCTCGTGAGATGGAAACCAAAAAGAAAA
GCTAGAACCAAAGTCTTCAAACTGTTAAAGGATCGATGTCGTGAAAAGGG
GATCAAGATGCGACAGGTGTCAGGCTCCAGAAAGGACTCTAACGCATCCT
ATTTTCTTACCCAACAAGCTGCTCTTTCTTATGTAGTTGACTCAGAAGAA
CAGACTGATCCCGATCTGGCACATACACTGTCGCGATATCCTGGTGCAGC
GATCATTGAAAAAATATCACAAGACATTTCTCCCGAACAGAATTGGCGAA
ATAATTTAGATGACATTGTTTTCGCTGGTCCAACGGGAGGCCATTCAATG
TCGACAATCTTTCCGGAGATTCAATTCGGCGATCAGAATCAAATCGTTAA
GCCTCCTGTTTGGTTTACTTGGGCATACACATTCGGTCGCTTTCTTGTAG
AGAACGAACAAGCTTTAGAGGCTGGTCTGATTGTTGTGACAAGCCCCTGT
CAATCACCATTGATTGGAGCGGTGGGACTGGGATCATTGGTCAAACTTCT
AGAGACGCAGACAAATACGACCGATAACGATCAGCATTTTGAAAAGCTTT
TTTCTCTACCTACTGGCACTCTCGTGAGATGGAAACCAAAAAGAAAAGCT
AGAACCAAAGTCTTCAAACTGTTAAAGGATCGATGTCGTGAAAAGGGGAT
CAAGATGCGACAGGTGTCAGGCTCCAGAAAGGACTCTAACGCATCCTATT
TTCTTACCCAACAAGCTGCTCTTTCTTATGTAGTTGACTCAGAAGAACAG
ACTGATCCCGATCTGGCACATACACTGTCGCGATATCCTGGTGCAGCGAT
CATTGAAAAAATATCACAAGACATTTCTCCCGAACAGAATTGGCGAAATA
ATTTAGATGACATTGTTTTCGCTGGTCCAACGGGAGGCCATTCA
back to top