mRNA_M-pyrifera_M_contig109778.2037.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109778.2037.1
Unique NamemRNA_M-pyrifera_M_contig109778.2037.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig109778.2037.1 vs. uniprot
Match: UPI00157294CB (hypothetical protein n=1 Tax=Agrobacterium fabrum TaxID=1176649 RepID=UPI00157294CB)

HSP 1 Score: 69.7 bits (169), Expect = 1.060e-10
Identity = 59/206 (28.64%), Postives = 96/206 (46.60%), Query Frame = 1 
Query:   10 VNAGIALLEIVACSPNERLAIQSMNVCVDFLQAR----HTNQLHSLACAVVITTLREISESFEDTGIFRVANRLLKLKA-----DSVDAEWVIVPGVQRVLYSGGKLNMQTIPLPPTGNMYPNSS---SFQFFEVHF---DDCAIEYLGYFFGECTFVNCAI---KNAYTQNIAGLNMEYCDFSDCQVTRKIDEFPDMRGSGNFFR 573
            V+AG+A LEI+   P+++LA+Q+MN+  D++Q+     H ++      A +            D G  R ANR ++  A     D    EW  + GV+ V Y GGK+          G ++ + S   +F++  V     +D  ++Y    +  C F  C I   +  Y  +    N   CDFSDC+ T K  E P+++   N+FR
Sbjct:  116 VSAGVATLEILVTGPDDKLAVQAMNLIADYVQSEMASSHAHRFRDETFAALAAGA--------DLG--REANRTIRCNAPIANDDEQAVEWTAISGVKTVQYIGGKVE---------GGIFGDFSDTPNFRYSGVRMTFQEDVKVDYR---YSNCAFSYCDIVGYRGTYGPDNQFTN---CDFSDCKFT-KTTEIPNLKNEKNYFR 295
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BLAST of mRNA_M-pyrifera_M_contig109778.2037.1 vs. uniprot
Match: UPI001CCA67EC (hypothetical protein n=1 Tax=Mesorhizobium sp. CA13 TaxID=2876643 RepID=UPI001CCA67EC)

HSP 1 Score: 67.4 bits (163), Expect = 7.360e-10
Identity = 56/198 (28.28%), Postives = 86/198 (43.43%), Query Frame = 1 
Query:    7 KVNAGIALLEIVACSPNERLAIQSMNVCVDFLQAR----HTNQLHSLACAVVITTLREISESFEDTGIFRVANRLLKLKADSVDAEWVIVPGVQRVLYSGGKLNMQTIPLPPTGNMYPNSSSFQFFEVHFDDCAIE-YLGYFFGECTFVNCAIKNAYTQNIAGLNMEYCDFSDCQVTRKIDEFPDMRGSGNFFRPDRP 585
            K +AG+A LE VA +   +    S  + ++F++      H+ +L   A A +    R+ S    ++  F +  +L  +  D   A W +V GV RV+YSGG +  Q I             S  F  V F  C IE +    +  C F NC     +T ++A    E C+FS  Q+       PD+R   NF+    P
Sbjct:  123 KRSAGLATLEAVAAADTPKFKDPSRRLLLEFIRTYGHKDHSGRLVQQAIAGLNAGFRKHSALLNESIHFEMDEKLAAVHEDYY-ANWHMVEGVARVMYSGGLMVGQRIA--------KGCGSVAFSYVQFSGCIIEDFSSCAWDRCRFTNCEFGRIHTDDLAEHLFENCNFSQTQIVFN-QAMPDLRKGDNFYLASFP 310
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BLAST of mRNA_M-pyrifera_M_contig109778.2037.1 vs. uniprot
Match: UPI001CBF91CF (hypothetical protein n=1 Tax=Oricola indica TaxID=2872591 RepID=UPI001CBF91CF)

HSP 1 Score: 57.0 bits (136), Expect = 3.050e-6
Identity = 52/167 (31.14%), Postives = 74/167 (44.31%), Query Frame = 1 
Query:    7 KVNAGIALLEIVACSPNERLAIQSMNVCVDFLQARHTNQLHSLACAVVITTLREISESFEDTGIFRVA------------NRLLKLKADSVDAEWVIVPGVQRVLYSGGKL--NMQTIPLPPTGNMYPNSSSFQFFEVHFDDC---AIEYLGYFFGECTFVNCAIKN 456
            KV+AGIA LE VA S NERLA+ ++N+  DF++     Q  +      I +L  IS+  E T    +               L   +  S + EW+ + GV+ V Y GGK   N     L P  +         F EV F+ C   A++  G     CTF  C+I +
Sbjct:  125 KVSAGIASLEAVAESGNERLAVTALNLLADFIETNLPTQGQTSNLRTAILSLASISDRTERTSTRNIVLSPRGTVTIIDPATLDSSRRFSTEPEWLPISGVRTVTYRGGKFARNFDWERLNPLVS---------FDEVLFESCLNLAVD--GNQHTNCTFSECSIAS 280
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109778.2037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI00157294CB1.060e-1028.64hypothetical protein n=1 Tax=Agrobacterium fabrum ... [more]
UPI001CCA67EC7.360e-1028.28hypothetical protein n=1 Tax=Mesorhizobium sp. CA1... [more]
UPI001CBF91CF3.050e-631.14hypothetical protein n=1 Tax=Oricola indica TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109778contigM-pyrifera_M_contig109778:19..603 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size585
Cds size585
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815607.9809117-CDS-M-pyrifera_M_contig109778:18..6031622815607.9809117-CDS-M-pyrifera_M_contig109778:18..603Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109778 19..603 +
1692277485.2684522-CDS-M-pyrifera_M_contig109778:18..6031692277485.2684522-CDS-M-pyrifera_M_contig109778:18..603Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109778 19..603 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109778.2037.1prot_M-pyrifera_M_contig109778.2037.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109778 19..603 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109778.2037.1

>prot_M-pyrifera_M_contig109778.2037.1 ID=prot_M-pyrifera_M_contig109778.2037.1|Name=mRNA_M-pyrifera_M_contig109778.2037.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=195bp
MGKVNAGIALLEIVACSPNERLAIQSMNVCVDFLQARHTNQLHSLACAVV
ITTLREISESFEDTGIFRVANRLLKLKADSVDAEWVIVPGVQRVLYSGGK
LNMQTIPLPPTGNMYPNSSSFQFFEVHFDDCAIEYLGYFFGECTFVNCAI
KNAYTQNIAGLNMEYCDFSDCQVTRKIDEFPDMRGSGNFFRPDRP
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mRNA from alignment at M-pyrifera_M_contig109778:19..603+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109778.2037.1 ID=mRNA_M-pyrifera_M_contig109778.2037.1|Name=mRNA_M-pyrifera_M_contig109778.2037.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=585bp|location=Sequence derived from alignment at M-pyrifera_M_contig109778:19..603+ (Macrocystis pyrifera P11B4 male)
ATGGGCAAAGTCAATGCCGGGATAGCTCTGCTTGAGATCGTGGCCTGCAG
CCCAAATGAAAGACTTGCTATCCAATCGATGAACGTCTGCGTTGATTTTT
TGCAGGCCAGACATACCAACCAGTTGCACAGCCTGGCCTGCGCCGTTGTA
ATCACAACACTCCGTGAAATTTCCGAAAGCTTTGAAGACACAGGAATATT
TCGTGTGGCAAACCGGCTTCTTAAGTTGAAGGCTGACAGTGTAGACGCCG
AGTGGGTAATCGTTCCAGGTGTTCAGAGGGTGCTGTACTCGGGTGGGAAG
CTTAATATGCAAACAATTCCACTTCCACCCACTGGTAATATGTATCCAAA
CAGCAGTAGTTTTCAGTTTTTTGAGGTGCACTTTGACGACTGTGCGATTG
AGTATCTCGGTTATTTTTTTGGAGAGTGCACCTTCGTTAACTGCGCAATC
AAGAATGCTTACACCCAAAATATCGCTGGTTTGAACATGGAATATTGTGA
CTTTTCCGACTGCCAAGTGACACGGAAAATCGATGAATTCCCAGATATGA
GGGGCAGCGGAAATTTCTTCAGACCAGACCGACCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109778:19..603+

>mRNA_M-pyrifera_M_contig109778.2037.1 ID=mRNA_M-pyrifera_M_contig109778.2037.1|Name=mRNA_M-pyrifera_M_contig109778.2037.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1170bp|location=Sequence derived from alignment at M-pyrifera_M_contig109778:19..603+ (Macrocystis pyrifera P11B4 male)
ATGGGCAAAGTCAATGCCGGGATAGCTCTGCTTGAGATCGTGGCCTGCAG
CCCAAATGAAAGACTTGCTATCCAATCGATGAACGTCTGCGTTGATTTTT
TGCAGGCCAGACATACCAACCAGTTGCACAGCCTGGCCTGCGCCGTTGTA
ATCACAACACTCCGTGAAATTTCCGAAAGCTTTGAAGACACAGGAATATT
TCGTGTGGCAAACCGGCTTCTTAAGTTGAAGGCTGACAGTGTAGACGCCG
AGTGGGTAATCGTTCCAGGTGTTCAGAGGGTGCTGTACTCGGGTGGGAAG
CTTAATATGCAAACAATTCCACTTCCACCCACTGGTAATATGTATCCAAA
CAGCAGTAGTTTTCAGTTTTTTGAGGTGCACTTTGACGACTGTGCGATTG
AGTATCTCGGTTATTTTTTTGGAGAGTGCACCTTCGTTAACTGCGCAATC
AAGAATGCTTACACCCAAAATATCGCTGGTTTGAACATGGAATATTGTGA
CTTTTCCGACTGCCAAGTGACACGGAAAATCGATGAATTCCCAGATATGA
GGGGCAGCGGAAATTTCTTCAGACCAGACCGACCTATGGGCAAAGTCAAT
GCCGGGATAGCTCTGCTTGAGATCGTGGCCTGCAGCCCAAATGAAAGACT
TGCTATCCAATCGATGAACGTCTGCGTTGATTTTTTGCAGGCCAGACATA
CCAACCAGTTGCACAGCCTGGCCTGCGCCGTTGTAATCACAACACTCCGT
GAAATTTCCGAAAGCTTTGAAGACACAGGAATATTTCGTGTGGCAAACCG
GCTTCTTAAGTTGAAGGCTGACAGTGTAGACGCCGAGTGGGTAATCGTTC
CAGGTGTTCAGAGGGTGCTGTACTCGGGTGGGAAGCTTAATATGCAAACA
ATTCCACTTCCACCCACTGGTAATATGTATCCAAACAGCAGTAGTTTTCA
GTTTTTTGAGGTGCACTTTGACGACTGTGCGATTGAGTATCTCGGTTATT
TTTTTGGAGAGTGCACCTTCGTTAACTGCGCAATCAAGAATGCTTACACC
CAAAATATCGCTGGTTTGAACATGGAATATTGTGACTTTTCCGACTGCCA
AGTGACACGGAAAATCGATGAATTCCCAGATATGAGGGGCAGCGGAAATT
TCTTCAGACCAGACCGACCT
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