mRNA_M-pyrifera_M_contig109571.2011.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109571.2011.1
Unique NamemRNA_M-pyrifera_M_contig109571.2011.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig109571.2011.1 vs. uniprot
Match: A0A5A8CE48_CAFRO (Aminotran_5 domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CE48_CAFRO)

HSP 1 Score: 137 bits (344), Expect = 1.540e-34
Identity = 80/173 (46.24%), Postives = 98/173 (56.65%), Query Frame = 1
Query:    1 ETLVEAMRKEMPHGCALMVVDSVTSNTALEIDVEVIARVAKEEFGCKQVLVDGAHALGQ---CDVNWDRMKEAGVDWFVTNAHKWFSSPRGLAILCASPTVQPQTRPLTRSHGIRDGFTSSFVWDGCRDYAPILTFPFLASMWKKISSPCLHTPTYTTELLKEAVTLLETSWG 510
            E +V      +P G  L VVD+VTSNTAL + V  IA V + +     +LVDGAHALG    C        E+G  WFVTN HKW+SSPRGLA +  SP  Q  TRPL  SHG   GF S FVWDGCRDY+  L+ P +A+  + +         Y  ELL  AV +L  +WG
Sbjct:  353 EWVVGLYETHLPAGAGLAVVDAVTSNTALAMPVARIAAVCRRKG--VPLLVDGAHALGSVGGCG------PESGATWFVTNCHKWWSSPRGLAAMWVSPEAQAATRPLVVSHGYGSGFASEFVWDGCRDYSAALSVPAVAAFRRAMGEA--RVARYCRELLSIAVDILVGAWG 515          
BLAST of mRNA_M-pyrifera_M_contig109571.2011.1 vs. uniprot
Match: A0A250WTZ4_9CHLO (Aminotran_5 domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WTZ4_9CHLO)

HSP 1 Score: 127 bits (319), Expect = 2.520e-31
Identity = 69/169 (40.83%), Postives = 94/169 (55.62%), Query Frame = 1
Query:    1 ETLVEAMRKEMPHGCALMVVDSVTSNTALEIDVEVIARVAKEEFGCKQVLVDGAHALGQCDVNWDRMKEAGVDWFVTNAHKWFSSPRGLAILCASPTVQPQTRPLTRSHGIRDGFTSSFVWDGCRDYAPILTFPFLASMWKKISSPCLHTPTYTTELLKEAVTLLETSW 507
            + ++E + + MP    L V D+VTSNTAL + ++ +  + K       VL+D AHA GQ  V+   + E   D++V N HKW + PRG A +   P  Q + RPL  SHG   GFTS F+WDGCRDYAP L       MW+ +      T  Y   LL++AV LL T+W
Sbjct:  207 DQIIEIVAQTMPQNTKLAVFDAVTSNTALVLPMKQLVELCKSRG--IPVLIDAAHAPGQLPVD---LHELNADYYVANCHKWLACPRGSAFMWVHPDRQSKIRPLVISHGSGCGFTSDFIWDGCRDYAPFLGVSSALGMWQALGFDRCRT--YCQNLLRDAVDLLTTAW 368          
BLAST of mRNA_M-pyrifera_M_contig109571.2011.1 vs. uniprot
Match: E1Z9I3_CHLVA (Aminotran_5 domain-containing protein (Fragment) n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z9I3_CHLVA)

HSP 1 Score: 122 bits (306), Expect = 2.950e-30
Identity = 69/180 (38.33%), Postives = 95/180 (52.78%), Query Frame = 1
Query:    1 ETLVEAMRKEMPHGCALMVVDSVTSNTALEIDVEVIARVAKEEFGCKQVLVDGAHALGQCDVNWDRMKEAGVDWFVTNAHKWFSSPRGLAILCASPTVQPQTRPLTRSHGIRD-----------GFTSSFVWDGCRDYAPILTFPFLASMWKKISSPCLHTPTYTTELLKEAVTLLETSW 507
            E LV  +   MP G  L V D+VTSNTA+ + ++ + ++        +VLVDGAHALG   ++   +     D+FVTN HKW  +PRG A L   P  Q   RPL  SHG +            GF S F+WDGCRDYAP+L        W+++    + +  Y  +LL +AV LL  +W
Sbjct:  122 EELVAQVAAAMPAGTKLAVFDAVTSNTAIRLPIQQLVQLCHSRG--VEVLVDGAHALGMLPLD---LHALAADYFVTNCHKWLCAPRGSAFLHVQPRHQAHVRPLIISHGKQSPSLARPSAQAVGFVSEFIWDGCRDYAPLLAVSTALRAWRQLGPEAVRS--YQRQLLHQAVALLTQAW 294          
BLAST of mRNA_M-pyrifera_M_contig109571.2011.1 vs. uniprot
Match: B8CFQ5_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CFQ5_THAPS)

HSP 1 Score: 123 bits (308), Expect = 1.420e-29
Identity = 67/163 (41.10%), Postives = 94/163 (57.67%), Query Frame = 1
Query:   46 ALMVVDSVTSNTALEIDVEVIARVAKEEFGCKQVLVDGAHALGQCDVNW------DRMKEAGVDWFVTNAHKWFSSPRGLAIL-CASPTVQPQT--RPLTRSHGIRDGFTSSFVWDGCRDYAPILTFPFLASMWKKISSPCLHTPTYTTELLKEAVTLLETSW 507
            ++++++ +TSNTA+ + +  IA  AKEE+G   V VDGAH L   D+N       ++     VD ++TNAHKWFSSPRG A+L C SP ++     +P   SHG+ DGF S F+WDGCRDYA  L+ P +A  W   +             LKE V +L + W
Sbjct:  275 SMIILEHITSNTAIHVPIAAIAHHAKEEYGMV-VAVDGAHGLLGLDLNMPSILSNEQQNNGHVDIYLTNAHKWFSSPRGAALLFCTSPQLRETILRQPAVVSHGVDDGFLSRFLWDGCRDYAAQLSLPVIADFWNSATVNAHQVREQLQNNLKEGVRILVSHW 436          
BLAST of mRNA_M-pyrifera_M_contig109571.2011.1 vs. uniprot
Match: A0A6S8EP46_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S8EP46_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.540e-29
Identity = 58/153 (37.91%), Postives = 86/153 (56.21%), Query Frame = 1
Query:   49 LMVVDSVTSNTALEIDVEVIARVAKEEFGCKQVLVDGAHALGQCDVNWDRMKEAGVDWFVTNAHKWFSSPRGLAILCASPTVQPQTRPLTRSHGIRDGFTSSFVWDGCRDYAPILTFPFLASMWKKISSPCLHTPTYTTELLKEAVTLLETSW 507
            L+++D  TSNTAL   +E +A+ +K      +VLVDGAH++   D+++  ++E GVD+FV+N HKW S+P+G   L     +     P   SHG   G+ S F W GC DY+  L+ PFL   W    +  +    Y + LL +A+ LLE  W
Sbjct:   14 LVILDHTTSNTALNYPIEKLAKASKRINSNIKVLVDGAHSMLAKDLDFKALEECGVDYFVSNGHKWASTPKGFGFLWVKANLTDSIHPPLISHGHGSGYLSEFSWQGCADYSVPLSIPFLLDFWSAFGTSKVRM--YQSTLLNQAMDLLEAEW 164          
BLAST of mRNA_M-pyrifera_M_contig109571.2011.1 vs. uniprot
Match: A0A6S8EKN2_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S8EKN2_9STRA)

HSP 1 Score: 116 bits (290), Expect = 6.170e-29
Identity = 58/153 (37.91%), Postives = 86/153 (56.21%), Query Frame = 1
Query:   49 LMVVDSVTSNTALEIDVEVIARVAKEEFGCKQVLVDGAHALGQCDVNWDRMKEAGVDWFVTNAHKWFSSPRGLAILCASPTVQPQTRPLTRSHGIRDGFTSSFVWDGCRDYAPILTFPFLASMWKKISSPCLHTPTYTTELLKEAVTLLETSW 507
            L+++D  TSNTAL   +E +A+ +K      +VLVDGAH++   D+++  ++E GVD+FV+N HKW S+P+G   L     +     P   SHG   G+ S F W GC DY+  L+ PFL   W    +  +    Y + LL +A+ LLE  W
Sbjct:   14 LVILDHTTSNTALNYPIEKLAKASKRINSNIKVLVDGAHSMLAKDLDFKALEECGVDYFVSNGHKWASTPKGFGFLWVKANLTDSIHPPLISHGHGSGYLSEFSWQGCADYSVPLSIPFLLDFWSAFGTSKVRM--YQSTLLNQAMDLLEAEW 164          
BLAST of mRNA_M-pyrifera_M_contig109571.2011.1 vs. uniprot
Match: A0A2P6TXP3_CHLSO (L-cysteine desulfhydrase 1 isoform X2 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TXP3_CHLSO)

HSP 1 Score: 118 bits (295), Expect = 3.160e-28
Identity = 65/170 (38.24%), Postives = 90/170 (52.94%), Query Frame = 1
Query:    1 ETLVEAMRKEMPHGCALMVVDSVTSNTALEIDVEVIARVAKEEFGCKQVLVDGAHALGQCDVNWDRMKEAGVDWFVTNAHKWFSSPRGLAILCASPTVQPQTRPLTRSHGIRDGFTSSFVWDGCRDYAPILTFPFLASMWKKISSPCLHTPTYTTELLKEAVTLLETSWG 510
            E LV  +   +P    L V D+VTSNTA+ + +  + ++        QVL+DGAHA GQ  ++   ++E G D+FV N HKW  +PRG A +   P  Q   RPL  SHG   GF S F+WDGCRDYAP+L         +++         +  +LL  AV  L  +WG
Sbjct:  167 EELVAQVAAALPANAKLAVFDAVTSNTAIVLPIWELVQLCHSRG--VQVLIDGAHAPGQLPLD---LEELGADYFVANCHKWLCAPRGSAFMHVRPEHQRHVRPLIVSHGYGSGFVSEFIWDGCRDYAPLLAISAALRALRQLGPEAAQA--HQRQLLAAAVDCLVAAWG 329          
BLAST of mRNA_M-pyrifera_M_contig109571.2011.1 vs. uniprot
Match: A0A383VII9_TETOB (Aminotran_5 domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VII9_TETOB)

HSP 1 Score: 118 bits (296), Expect = 5.280e-28
Identity = 59/141 (41.84%), Postives = 83/141 (58.87%), Query Frame = 1
Query:    1 ETLVEAMRKEMPHGCALMVVDSVTSNTALEIDVEVIARVAKEEFGCKQVLVDGAHALGQCDVNWDRMKEAGVDWFVTNAHKWFSSPRGLAILCASPTVQPQTRPLTRSHGIRDGFTSSFVWDGCRDYAPILTFPFLASMWK 423
            E L+E +   +P    L V D+VTSNTAL + ++ + ++ K+      VL+DGAHALG   ++   +++   D+FV+N HKW    RG A+L  +P  Q Q +P   SHG   GF SSF+WDGCRDYAP+L        WK
Sbjct:  232 EQLLELVTDSLPQNAKLAVFDAVTSNTALVLPIKQLVQLCKDRG--VPVLIDGAHALGMLPLD---LQQLNPDFFVSNCHKWLCGARGSAMLYVAPQWQQQVQPPVLSHGAEAGFLSSFIWDGCRDYAPLLAITTAIQWWK 367          
BLAST of mRNA_M-pyrifera_M_contig109571.2011.1 vs. uniprot
Match: A0A7J7QNG2_9CHLO (Aminotran_5 domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QNG2_9CHLO)

HSP 1 Score: 114 bits (284), Expect = 2.330e-26
Identity = 58/143 (40.56%), Postives = 83/143 (58.04%), Query Frame = 1
Query:    1 ETLVEAMRKEMPHGCALMVVDSVTSNTALEIDVEVIARVAKEEFGCKQVLVDGAHALGQCDVNWDRMKEAGVDWFVTNAHKWFSSPRGLAILCASPTVQPQTRPLTRSHGIRDGFTSSFVWDGCRDYAPILTFPFLASMWKKI 429
            E L+EA+   +P    L V D+VTSNTAL + ++ + ++ K       VL+DGAHALG   ++   +K+   D+FV+N HKW    RG A+L  +P  Q Q +P   SHG   GF S ++WDGCRDYAP+L        W+ +
Sbjct:  231 EQLLEAVAGSLPPTAKLAVFDAVTSNTALVLPIKQLVQLCKGRG--VPVLIDGAHALGMLPLD---LKQLQPDFFVSNCHKWLCGARGSAMLYVAPAWQQQVQPPVLSHGAGAGFLSRYIWDGCRDYAPLLAISTAVQWWRAL 368          
BLAST of mRNA_M-pyrifera_M_contig109571.2011.1 vs. uniprot
Match: A0A2P6VQF8_9CHLO (Class V superfamily n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VQF8_9CHLO)

HSP 1 Score: 110 bits (276), Expect = 2.490e-25
Identity = 64/168 (38.10%), Postives = 86/168 (51.19%), Query Frame = 1
Query:    7 LVEAMRKEMPHGCALMVVDSVTSNTALEIDVEVIARVAKEEFGCKQVLVDGAHALGQCDVNWDRMKEAGVDWFVTNAHKWFSSPRGLAILCASPTVQPQTRPLTRSHGIRDGFTSSFVWDGCRDYAPILTFPFLASMWKKISSPCLHTPTYTTELLKEAVTLLETSWG 510
            LV  +   +P G    V D+VTSNTA+ + +  +  + +      +VL+DGAHALGQ  V  + +   G D+FV N HKW  +PRG A L      Q    PL  SHG   GF S F+WDGCRDYAP+L        W+ +         Y   LL +A   L ++WG
Sbjct:  218 LVSQVAAALPPGARFAVFDAVTSNTAVVLPLAELVTLCQGRG--VEVLIDGAHALGQLPVGLEAL---GADYFVGNCHKWLCAPRGSAFLHVPRGHQAHVHPLIVSHGHGSGFVSEFIWDGCRDYAPLLGISAALRAWQAVG--WAEVRRYQRALLADARGALCSAWG 378          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109571.2011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CE48_CAFRO1.540e-3446.24Aminotran_5 domain-containing protein n=2 Tax=Cafe... [more]
A0A250WTZ4_9CHLO2.520e-3140.83Aminotran_5 domain-containing protein n=1 Tax=Chla... [more]
E1Z9I3_CHLVA2.950e-3038.33Aminotran_5 domain-containing protein (Fragment) n... [more]
B8CFQ5_THAPS1.420e-2941.10Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A6S8EP46_9STRA1.540e-2937.91Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A6S8EKN2_9STRA6.170e-2937.91Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A2P6TXP3_CHLSO3.160e-2838.24L-cysteine desulfhydrase 1 isoform X2 n=1 Tax=Chlo... [more]
A0A383VII9_TETOB5.280e-2841.84Aminotran_5 domain-containing protein n=1 Tax=Tetr... [more]
A0A7J7QNG2_9CHLO2.330e-2640.56Aminotran_5 domain-containing protein n=1 Tax=Scen... [more]
A0A2P6VQF8_9CHLO2.490e-2538.10Class V superfamily n=1 Tax=Micractinium conductri... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109571contigM-pyrifera_M_contig109571:90..599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.6
Seed ortholog evalue7.1e-25
Seed eggNOG ortholog35128.Thaps25748
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cysteine desulfurase activity
EggNOG OGs2XCU4@2836,COG1104@1,KOG1549@2759
COG Functional cat.E
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size510
Cds size492
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815606.273206-UTR-M-pyrifera_M_contig109571:89..1071622815606.273206-UTR-M-pyrifera_M_contig109571:89..107Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig109571 90..107 +
1692277484.3540738-UTR-M-pyrifera_M_contig109571:89..1071692277484.3540738-UTR-M-pyrifera_M_contig109571:89..107Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig109571 90..107 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815606.2877243-CDS-M-pyrifera_M_contig109571:107..5991622815606.2877243-CDS-M-pyrifera_M_contig109571:107..599Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109571 108..599 +
1692277484.3637865-CDS-M-pyrifera_M_contig109571:107..5991692277484.3637865-CDS-M-pyrifera_M_contig109571:107..599Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109571 108..599 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109571.2011.1prot_M-pyrifera_M_contig109571.2011.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109571 108..599 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109571.2011.1

>prot_M-pyrifera_M_contig109571.2011.1 ID=prot_M-pyrifera_M_contig109571.2011.1|Name=mRNA_M-pyrifera_M_contig109571.2011.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=164bp
MRKEMPHGCALMVVDSVTSNTALEIDVEVIARVAKEEFGCKQVLVDGAHA
LGQCDVNWDRMKEAGVDWFVTNAHKWFSSPRGLAILCASPTVQPQTRPLT
RSHGIRDGFTSSFVWDGCRDYAPILTFPFLASMWKKISSPCLHTPTYTTE
LLKEAVTLLETSWG
back to top

mRNA from alignment at M-pyrifera_M_contig109571:90..599+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109571.2011.1 ID=mRNA_M-pyrifera_M_contig109571.2011.1|Name=mRNA_M-pyrifera_M_contig109571.2011.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig109571:90..599+ (Macrocystis pyrifera P11B4 male)
GAAACCTTGGTGGAGGCAATGAGGAAGGAAATGCCTCATGGATGTGCGCT GATGGTTGTTGATAGTGTAACATCAAATACTGCTTTGGAAATTGATGTAG AGGTGATTGCAAGGGTTGCAAAGGAGGAGTTTGGATGCAAGCAAGTGTTG GTGGATGGAGCACATGCATTGGGGCAATGTGATGTGAATTGGGATCGTAT GAAGGAAGCAGGAGTAGATTGGTTTGTGACGAATGCACACAAGTGGTTTT CTTCTCCAAGAGGATTGGCCATCTTATGTGCTTCTCCCACAGTACAACCT CAAACTCGACCACTCACTCGATCTCATGGCATTCGTGATGGATTTACATC CTCCTTTGTGTGGGATGGATGCAGGGATTACGCACCCATCCTCACATTTC CATTCCTCGCCTCGATGTGGAAGAAAATTTCATCCCCATGTCTCCACACC CCTACCTACACGACAGAACTCCTCAAAGAAGCAGTAACACTTCTTGAAAC ATCATGGGGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig109571:90..599+

>mRNA_M-pyrifera_M_contig109571.2011.1 ID=mRNA_M-pyrifera_M_contig109571.2011.1|Name=mRNA_M-pyrifera_M_contig109571.2011.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=984bp|location=Sequence derived from alignment at M-pyrifera_M_contig109571:90..599+ (Macrocystis pyrifera P11B4 male)
ATGAGGAAGGAAATGCCTCATGGATGTGCGCTGATGGTTGTTGATAGTGT
AACATCAAATACTGCTTTGGAAATTGATGTAGAGGTGATTGCAAGGGTTG
CAAAGGAGGAGTTTGGATGCAAGCAAGTGTTGGTGGATGGAGCACATGCA
TTGGGGCAATGTGATGTGAATTGGGATCGTATGAAGGAAGCAGGAGTAGA
TTGGTTTGTGACGAATGCACACAAGTGGTTTTCTTCTCCAAGAGGATTGG
CCATCTTATGTGCTTCTCCCACAGTACAACCTCAAACTCGACCACTCACT
CGATCTCATGGCATTCGTGATGGATTTACATCCTCCTTTGTGTGGGATGG
ATGCAGGGATTACGCACCCATCCTCACATTTCCATTCCTCGCCTCGATGT
GGAAGAAAATTTCATCCCCATGTCTCCACACCCCTACCTACACGACAGAA
CTCCTCAAAGAAGCAGTAACACTTCTTGAAACATCATGGGGAATGAGGAA
GGAAATGCCTCATGGATGTGCGCTGATGGTTGTTGATAGTGTAACATCAA
ATACTGCTTTGGAAATTGATGTAGAGGTGATTGCAAGGGTTGCAAAGGAG
GAGTTTGGATGCAAGCAAGTGTTGGTGGATGGAGCACATGCATTGGGGCA
ATGTGATGTGAATTGGGATCGTATGAAGGAAGCAGGAGTAGATTGGTTTG
TGACGAATGCACACAAGTGGTTTTCTTCTCCAAGAGGATTGGCCATCTTA
TGTGCTTCTCCCACAGTACAACCTCAAACTCGACCACTCACTCGATCTCA
TGGCATTCGTGATGGATTTACATCCTCCTTTGTGTGGGATGGATGCAGGG
ATTACGCACCCATCCTCACATTTCCATTCCTCGCCTCGATGTGGAAGAAA
ATTTCATCCCCATGTCTCCACACCCCTACCTACACGACAGAACTCCTCAA
AGAAGCAGTAACACTTCTTGAAACATCATGGGGA
back to top