mRNA_M-pyrifera_M_contig109354.1948.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109354.1948.1
Unique NamemRNA_M-pyrifera_M_contig109354.1948.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig109354.1948.1 vs. uniprot
Match: A0A7S2V8M2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V8M2_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.490e-7
Identity = 27/35 (77.14%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    1 NKTDPGVCGCGVSDADTDSDGTVDCNDLCINDPTK 105
            NK   GVCGCGV+DADTDSDGTVDC D+C NDP K
Sbjct:    2 NKATEGVCGCGVADADTDSDGTVDCEDVCPNDPLK 36
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BLAST of mRNA_M-pyrifera_M_contig109354.1948.1 vs. uniprot
Match: UPI001CBB0724 (T9SS type A sorting domain-containing protein n=1 Tax=Aestuariivivens sp. NBU2969 TaxID=2873267 RepID=UPI001CBB0724)

HSP 1 Score: 58.2 bits (139), Expect = 7.900e-7
Identity = 25/33 (75.76%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:    1 NKTDPGVCGCGVSDADTDSDGTVDCNDLCINDP 99
            NKTDPGVCGCG ++ DTDSDG +DCNDL IN P
Sbjct:   15 NKTDPGVCGCGTAETDTDSDGVLDCNDLEINSP 47
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BLAST of mRNA_M-pyrifera_M_contig109354.1948.1 vs. uniprot
Match: A0A7C4JW05_9BACT (HYR domain-containing protein (Fragment) n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7C4JW05_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 7.190e-5
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:    1 NKTDPGVCGCGVSDADTDSDGTVDCNDLCINDP 99
            NKT+PG+CGCGV+D DTD DG +DC D C N P
Sbjct:  731 NKTEPGICGCGVADVDTDGDGLLDCQDNCPNVP 763
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BLAST of mRNA_M-pyrifera_M_contig109354.1948.1 vs. uniprot
Match: A0A3M1CHQ9_9DELT (Serine protease (Fragment) n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3M1CHQ9_9DELT)

HSP 1 Score: 53.1 bits (126), Expect = 8.890e-5
Identity = 22/29 (75.86%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:    1 NKTDPGVCGCGVSDADTDSDGTVDCNDLC 87
            +KTDPGVCGCGV+D D+DSDG  DCND C
Sbjct:  592 DKTDPGVCGCGVADTDSDSDGIADCNDNC 620
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109354.1948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S2V8M2_9STRA1.490e-777.14Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
UPI001CBB07247.900e-775.76T9SS type A sorting domain-containing protein n=1 ... [more]
A0A7C4JW05_9BACT7.190e-566.67HYR domain-containing protein (Fragment) n=1 Tax=B... [more]
A0A3M1CHQ9_9DELT8.890e-575.86Serine protease (Fragment) n=1 Tax=Deltaproteobact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109354contigM-pyrifera_M_contig109354:3..602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size600
Cds size600
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815603.4480033-CDS-M-pyrifera_M_contig109354:2..6021622815603.4480033-CDS-M-pyrifera_M_contig109354:2..602Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109354 3..602 +
1692277483.2123773-CDS-M-pyrifera_M_contig109354:2..6021692277483.2123773-CDS-M-pyrifera_M_contig109354:2..602Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109354 3..602 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109354.1948.1prot_M-pyrifera_M_contig109354.1948.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109354 3..602 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109354.1948.1

>prot_M-pyrifera_M_contig109354.1948.1 ID=prot_M-pyrifera_M_contig109354.1948.1|Name=mRNA_M-pyrifera_M_contig109354.1948.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=200bp
NKTDPGVCGCGVSDADTDSDGTVDCNDLCINDPTKTDPGQCGCGNPDVFS
DADSVADCNDGCPTDSTKTSPGVCGCGIPDVDADSDGTLDCNDACPTDPL
KTDPGQCDCLNPDVQSDSDGVADCNDQCPTDGDKVSPGVCGCGVPDTDTD
SDGTPDCNDQCPADSGKTTPGICGCGASDTADSDSDGVVDCLDQCVGSPD
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mRNA from alignment at M-pyrifera_M_contig109354:3..602+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109354.1948.1 ID=mRNA_M-pyrifera_M_contig109354.1948.1|Name=mRNA_M-pyrifera_M_contig109354.1948.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig109354:3..602+ (Macrocystis pyrifera P11B4 male)
AACAAGACCGACCCCGGTGTTTGTGGATGTGGCGTCTCCGATGCTGATAC
TGACAGCGACGGCACTGTCGACTGCAACGACCTCTGCATCAACGACCCCA
CCAAGACCGATCCGGGTCAGTGCGGCTGCGGCAACCCTGATGTCTTCTCC
GACGCGGACAGCGTCGCTGACTGCAACGACGGCTGCCCGACCGACTCTAC
CAAGACGAGCCCCGGTGTTTGCGGCTGTGGCATTCCTGATGTCGACGCGG
ACAGCGACGGAACTCTTGACTGCAACGACGCCTGCCCCACTGATCCTCTC
AAGACGGACCCAGGCCAGTGCGACTGCCTCAACCCTGACGTCCAGTCTGA
TTCTGACGGTGTGGCCGACTGCAACGACCAGTGTCCTACTGACGGAGACA
AGGTCTCCCCAGGCGTGTGCGGCTGCGGTGTGCCCGATACGGACACTGAC
AGCGACGGCACGCCCGATTGCAACGATCAGTGCCCTGCTGACAGTGGCAA
GACCACCCCTGGCATCTGCGGATGCGGTGCTTCCGACACGGCCGATTCTG
ACAGCGACGGTGTCGTTGACTGCCTTGACCAGTGCGTGGGCTCGCCTGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109354:3..602+

>mRNA_M-pyrifera_M_contig109354.1948.1 ID=mRNA_M-pyrifera_M_contig109354.1948.1|Name=mRNA_M-pyrifera_M_contig109354.1948.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1200bp|location=Sequence derived from alignment at M-pyrifera_M_contig109354:3..602+ (Macrocystis pyrifera P11B4 male)
AACAAGACCGACCCCGGTGTTTGTGGATGTGGCGTCTCCGATGCTGATAC
TGACAGCGACGGCACTGTCGACTGCAACGACCTCTGCATCAACGACCCCA
CCAAGACCGATCCGGGTCAGTGCGGCTGCGGCAACCCTGATGTCTTCTCC
GACGCGGACAGCGTCGCTGACTGCAACGACGGCTGCCCGACCGACTCTAC
CAAGACGAGCCCCGGTGTTTGCGGCTGTGGCATTCCTGATGTCGACGCGG
ACAGCGACGGAACTCTTGACTGCAACGACGCCTGCCCCACTGATCCTCTC
AAGACGGACCCAGGCCAGTGCGACTGCCTCAACCCTGACGTCCAGTCTGA
TTCTGACGGTGTGGCCGACTGCAACGACCAGTGTCCTACTGACGGAGACA
AGGTCTCCCCAGGCGTGTGCGGCTGCGGTGTGCCCGATACGGACACTGAC
AGCGACGGCACGCCCGATTGCAACGATCAGTGCCCTGCTGACAGTGGCAA
GACCACCCCTGGCATCTGCGGATGCGGTGCTTCCGACACGGCCGATTCTG
ACAGCGACGGTGTCGTTGACTGCCTTGACCAGTGCGTGGGCTCGCCTGAC
AACAAGACCGACCCCGGTGTTTGTGGATGTGGCGTCTCCGATGCTGATAC
TGACAGCGACGGCACTGTCGACTGCAACGACCTCTGCATCAACGACCCCA
CCAAGACCGATCCGGGTCAGTGCGGCTGCGGCAACCCTGATGTCTTCTCC
GACGCGGACAGCGTCGCTGACTGCAACGACGGCTGCCCGACCGACTCTAC
CAAGACGAGCCCCGGTGTTTGCGGCTGTGGCATTCCTGATGTCGACGCGG
ACAGCGACGGAACTCTTGACTGCAACGACGCCTGCCCCACTGATCCTCTC
AAGACGGACCCAGGCCAGTGCGACTGCCTCAACCCTGACGTCCAGTCTGA
TTCTGACGGTGTGGCCGACTGCAACGACCAGTGTCCTACTGACGGAGACA
AGGTCTCCCCAGGCGTGTGCGGCTGCGGTGTGCCCGATACGGACACTGAC
AGCGACGGCACGCCCGATTGCAACGATCAGTGCCCTGCTGACAGTGGCAA
GACCACCCCTGGCATCTGCGGATGCGGTGCTTCCGACACGGCCGATTCTG
ACAGCGACGGTGTCGTTGACTGCCTTGACCAGTGCGTGGGCTCGCCTGAC
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