mRNA_M-pyrifera_M_contig108958.1876.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108958.1876.1
Unique NamemRNA_M-pyrifera_M_contig108958.1876.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig108958.1876.1 vs. uniprot
Match: A0A833EPM5_9BACT (PspC domain-containing protein n=1 Tax=Calditrichaeota bacterium TaxID=2212469 RepID=A0A833EPM5_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 2.960e-8
Identity = 34/80 (42.50%), Postives = 43/80 (53.75%), Query Frame = 1
Query:   37 GVAAGIARYFGIETGLVKAAFIVATFFGGFGIFAYIAGWALIPKEHHPDPRPVVLN----------GGVAAIVIGTLALI 246
            GV  G+A YF I+  LV+  F++A F+GG GI AYIA W +IP+     PR    N          GG+A I  G L LI
Sbjct:   50 GVCGGVAEYFNIDLFLVRVIFVLAVFWGGVGIIAYIAAWIIIPENPDEQPREKEPNEKSSSNAGLIGGLALIFFGFLLLI 129          
BLAST of mRNA_M-pyrifera_M_contig108958.1876.1 vs. uniprot
Match: A0A6B0WLX0_9ACTN (PspC domain-containing protein n=5 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B0WLX0_9ACTN)

HSP 1 Score: 58.2 bits (139), Expect = 1.220e-7
Identity = 28/58 (48.28%), Postives = 35/58 (60.34%), Query Frame = 1
Query:   37 GVAAGIARYFGIETGLVKAAFIVATFFGGFGIFAYIAGWALIPKEHHPDPRPVVLNGG 210
            GVA GI  YFGI++ +V+ AFI+ TF GG G F Y+ GW  +P E  P      L GG
Sbjct:  102 GVAGGIGAYFGIDSVIVRIAFILLTFLGGAGPFLYLIGWLALPTEDSPSVIAKALGGG 159          
BLAST of mRNA_M-pyrifera_M_contig108958.1876.1 vs. uniprot
Match: A0A7J9ZU01_9ACTN (PspC domain-containing protein n=1 Tax=Streptosporangiales bacterium TaxID=2604148 RepID=A0A7J9ZU01_9ACTN)

HSP 1 Score: 54.7 bits (130), Expect = 1.350e-7
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 1
Query:    1 RRLRRAA-GSTGPGVAAGIARYFGIETGLVKAAFIVATFFGGFGIFAYIAGWALIPKE 171
            R+LRR   G    GVA+GI  Y  ++  +++    VATFFGG G+F Y+AGW LIP+E
Sbjct:   12 RKLRRTRDGRIIAGVASGIGAYVRLDANIIRLVLAVATFFGGAGVFIYVAGWLLIPEE 69          
BLAST of mRNA_M-pyrifera_M_contig108958.1876.1 vs. uniprot
Match: A0A7K2A8X6_9ACTN (PspC domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K2A8X6_9ACTN)

HSP 1 Score: 57.8 bits (138), Expect = 1.650e-7
Identity = 33/77 (42.86%), Postives = 45/77 (58.44%), Query Frame = 1
Query:   37 GVAAGIARYFGIETGLVKAAFIVATFFGGFGIFAYIAGWALIPKEHHPDPRPVVLNG-------GVAAIVIGTLALI 246
            GVA GI  YFGI++ +V+ AFIV TF GG G F Y+ GW ++P+E  P      L G        +AA+V+  L L+
Sbjct:   60 GVAGGIGAYFGIDSVIVRIAFIVLTFLGGAGPFLYLIGWLVLPREDAPSVIANALAGDSEGRFRSLAAVVLIGLGLL 136          
BLAST of mRNA_M-pyrifera_M_contig108958.1876.1 vs. uniprot
Match: A0A6B1E738_9ACTN (PspC domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1E738_9ACTN)

HSP 1 Score: 57.0 bits (136), Expect = 3.060e-7
Identity = 29/54 (53.70%), Postives = 36/54 (66.67%), Query Frame = 1
Query:   37 GVAAGIARYFGIETGLVKAAFIVATFFGGFGIFAYIAGWALIPKEHHPDPRPVV 198
            GVA GI  YFGI++ +V+ AFIV TF GG G F Y+ GW  +PKE   D R +V
Sbjct:   48 GVAGGIGAYFGIDSVIVRIAFIVLTFLGGAGPFLYLIGWLALPKE---DSRSIV 98          
BLAST of mRNA_M-pyrifera_M_contig108958.1876.1 vs. uniprot
Match: A0A3G8ZNC4_9ACTN (PspC domain-containing protein n=1 Tax=Nakamurella antarctica TaxID=1902245 RepID=A0A3G8ZNC4_9ACTN)

HSP 1 Score: 56.6 bits (135), Expect = 4.210e-7
Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 1
Query:   37 GVAAGIARYFGIETGLVKAAFIVATFFGGFGIFAYIAGWALIPKE 171
            GVA G+ RY G++  L++ AF+V T FGGFG+FAY AGW L+  +
Sbjct:   31 GVAGGVGRYLGVDPVLLRVAFVVLTIFGGFGLFAYAAGWLLLAAD 75          
BLAST of mRNA_M-pyrifera_M_contig108958.1876.1 vs. uniprot
Match: UPI001E4345B9 (PspC domain-containing protein n=1 Tax=Nocardioides okcheonensis TaxID=2894081 RepID=UPI001E4345B9)

HSP 1 Score: 54.3 bits (129), Expect = 2.680e-6
Identity = 29/73 (39.73%), Postives = 43/73 (58.90%), Query Frame = 1
Query:   37 GVAAGIARYFGIETGLVKAAFIVATFFGGFGIFAYIAGWALIPKEHHPDPRPVVL---NGGVAAIVIGTLALI 246
            GVA G+AR+  I+  +V+   +VA FFGG G+ AY+  W L+P+E   D  P+ L   N  +A   +G  AL+
Sbjct:   46 GVAGGLARHLDIDPIIVRVVLVVAVFFGGAGLLAYVGAWILVPEEGTSD-EPLGLDRRNRSIALAAVGVFALL 117          
BLAST of mRNA_M-pyrifera_M_contig108958.1876.1 vs. uniprot
Match: A0A2V8SF53_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8SF53_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 2.690e-6
Identity = 22/45 (48.89%), Postives = 32/45 (71.11%), Query Frame = 1
Query:   37 GVAAGIARYFGIETGLVKAAFIVATFFGGFGIFAYIAGWALIPKE 171
            GVAAG A YFG++  L +  FI+  F  GFG+ AY+ GWA++P++
Sbjct:   16 GVAAGFANYFGVDPVLARLVFILLAFVNGFGLVAYVIGWAIMPRD 60          
BLAST of mRNA_M-pyrifera_M_contig108958.1876.1 vs. uniprot
Match: A0A1H4TE32_9ACTN (Phage shock protein PspC (Stress-responsive transcriptional regulator) n=2 Tax=Nocardioides exalbidus TaxID=402596 RepID=A0A1H4TE32_9ACTN)

HSP 1 Score: 54.3 bits (129), Expect = 2.700e-6
Identity = 30/73 (41.10%), Postives = 45/73 (61.64%), Query Frame = 1
Query:   37 GVAAGIARYFGIETGLVKAAFIVATFFGGFGIFAYIAGWALIPKEHHPDPRPVVL---NGGVAAIVIGTLALI 246
            GVA G+AR+  I+  +V+ A +VA FFGG G+ AY+  W L+P+E   D  P+ L   N  +A   +G LA++
Sbjct:   58 GVAGGLARHLDIDPIIVRVALVVAVFFGGAGLLAYVGAWVLVPEEGTND-EPLGLDRRNRSLALAGVGVLAVL 129          
BLAST of mRNA_M-pyrifera_M_contig108958.1876.1 vs. uniprot
Match: A0A4Q2RYT9_9ACTN (PspC domain-containing protein n=2 Tax=Nocardioides oleivorans TaxID=273676 RepID=A0A4Q2RYT9_9ACTN)

HSP 1 Score: 54.3 bits (129), Expect = 2.700e-6
Identity = 30/73 (41.10%), Postives = 45/73 (61.64%), Query Frame = 1
Query:   37 GVAAGIARYFGIETGLVKAAFIVATFFGGFGIFAYIAGWALIPKEHHPDPRPVVL---NGGVAAIVIGTLALI 246
            GVA G+AR+  I+  +V+ A +VA FFGG G+ AY+  W L+P+E   D  P+ L   N  +A   +G LA++
Sbjct:   53 GVAGGLARHLDIDPIIVRVALVVAVFFGGAGLLAYVGAWVLVPEEGTND-EPLGLDRRNRSLALAGVGVLAVL 124          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108958.1876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A833EPM5_9BACT2.960e-842.50PspC domain-containing protein n=1 Tax=Calditricha... [more]
A0A6B0WLX0_9ACTN1.220e-748.28PspC domain-containing protein n=5 Tax=Acidimicrob... [more]
A0A7J9ZU01_9ACTN1.350e-748.28PspC domain-containing protein n=1 Tax=Streptospor... [more]
A0A7K2A8X6_9ACTN1.650e-742.86PspC domain-containing protein n=1 Tax=Acidimicrob... [more]
A0A6B1E738_9ACTN3.060e-753.70PspC domain-containing protein n=1 Tax=Acidimicrob... [more]
A0A3G8ZNC4_9ACTN4.210e-753.33PspC domain-containing protein n=1 Tax=Nakamurella... [more]
UPI001E4345B92.680e-639.73PspC domain-containing protein n=1 Tax=Nocardioide... [more]
A0A2V8SF53_9BACT2.690e-648.89Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A1H4TE32_9ACTN2.700e-641.10Phage shock protein PspC (Stress-responsive transc... [more]
A0A4Q2RYT9_9ACTN2.700e-641.10PspC domain-containing protein n=2 Tax=Nocardioide... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108958contigM-pyrifera_M_contig108958:2..316 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.8
Seed ortholog evalue4.3e-07
Seed eggNOG ortholog1385519.N801_17520
Preferred namepspC
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.PspC domain
EggNOG OGs2GIVS@201174,4FH64@85021,COG1983@1,COG1983@2
COG Functional cat.KT
Best tax levelIntrasporangiaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size315
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815599.4622066-CDS-M-pyrifera_M_contig108958:1..3161622815599.4622066-CDS-M-pyrifera_M_contig108958:1..316Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108958 2..316 -
1692277481.4347649-CDS-M-pyrifera_M_contig108958:1..3161692277481.4347649-CDS-M-pyrifera_M_contig108958:1..316Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108958 2..316 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108958.1876.1prot_M-pyrifera_M_contig108958.1876.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108958 2..316 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108958.1876.1

>prot_M-pyrifera_M_contig108958.1876.1 ID=prot_M-pyrifera_M_contig108958.1876.1|Name=mRNA_M-pyrifera_M_contig108958.1876.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
RRLRRAAGSTGPGVAAGIARYFGIETGLVKAAFIVATFFGGFGIFAYIAG
WALIPKEHHPDPRPVVLNGGVAAIVIGTLALIGAASVTFGAGGVAGNLLA
PALLI
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mRNA from alignment at M-pyrifera_M_contig108958:2..316-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108958.1876.1 ID=mRNA_M-pyrifera_M_contig108958.1876.1|Name=mRNA_M-pyrifera_M_contig108958.1876.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=315bp|location=Sequence derived from alignment at M-pyrifera_M_contig108958:2..316- (Macrocystis pyrifera P11B4 male)
CGCCGCCTCCGCCGGGCTGCGGGAAGCACCGGGCCCGGCGTGGCCGCCGG CATCGCCCGCTACTTCGGCATCGAGACGGGCCTGGTGAAGGCCGCCTTCA TCGTCGCCACCTTCTTCGGCGGTTTCGGCATCTTCGCCTACATCGCCGGA TGGGCCCTGATCCCGAAGGAGCACCACCCCGACCCTCGCCCCGTGGTCCT CAACGGTGGCGTGGCCGCCATCGTGATCGGCACCCTGGCCCTCATCGGCG CCGCATCGGTCACCTTCGGCGCCGGTGGAGTTGCCGGCAACCTGCTGGCC CCCGCACTCCTGATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108958:2..316-

>mRNA_M-pyrifera_M_contig108958.1876.1 ID=mRNA_M-pyrifera_M_contig108958.1876.1|Name=mRNA_M-pyrifera_M_contig108958.1876.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig108958:2..316- (Macrocystis pyrifera P11B4 male)
CGCCGCCTCCGCCGGGCTGCGGGAAGCACCGGGCCCGGCGTGGCCGCCGG
CATCGCCCGCTACTTCGGCATCGAGACGGGCCTGGTGAAGGCCGCCTTCA
TCGTCGCCACCTTCTTCGGCGGTTTCGGCATCTTCGCCTACATCGCCGGA
TGGGCCCTGATCCCGAAGGAGCACCACCCCGACCCTCGCCCCGTGGTCCT
CAACGGTGGCGTGGCCGCCATCGTGATCGGCACCCTGGCCCTCATCGGCG
CCGCATCGGTCACCTTCGGCGCCGGTGGAGTTGCCGGCAACCTGCTGGCC
CCCGCACTCCTGATCCGCCGCCTCCGCCGGGCTGCGGGAAGCACCGGGCC
CGGCGTGGCCGCCGGCATCGCCCGCTACTTCGGCATCGAGACGGGCCTGG
TGAAGGCCGCCTTCATCGTCGCCACCTTCTTCGGCGGTTTCGGCATCTTC
GCCTACATCGCCGGATGGGCCCTGATCCCGAAGGAGCACCACCCCGACCC
TCGCCCCGTGGTCCTCAACGGTGGCGTGGCCGCCATCGTGATCGGCACCC
TGGCCCTCATCGGCGCCGCATCGGTCACCTTCGGCGCCGGTGGAGTTGCC
GGCAACCTGCTGGCCCCCGCACTCCTGATC
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