mRNA_M-pyrifera_M_contig108958.1876.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig108958.1876.1 vs. uniprot
Match: A0A833EPM5_9BACT (PspC domain-containing protein n=1 Tax=Calditrichaeota bacterium TaxID=2212469 RepID=A0A833EPM5_9BACT) HSP 1 Score: 59.3 bits (142), Expect = 2.960e-8 Identity = 34/80 (42.50%), Postives = 43/80 (53.75%), Query Frame = 1 Query: 37 GVAAGIARYFGIETGLVKAAFIVATFFGGFGIFAYIAGWALIPKEHHPDPRPVVLN----------GGVAAIVIGTLALI 246 GV G+A YF I+ LV+ F++A F+GG GI AYIA W +IP+ PR N GG+A I G L LI Sbjct: 50 GVCGGVAEYFNIDLFLVRVIFVLAVFWGGVGIIAYIAAWIIIPENPDEQPREKEPNEKSSSNAGLIGGLALIFFGFLLLI 129
BLAST of mRNA_M-pyrifera_M_contig108958.1876.1 vs. uniprot
Match: A0A6B0WLX0_9ACTN (PspC domain-containing protein n=5 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B0WLX0_9ACTN) HSP 1 Score: 58.2 bits (139), Expect = 1.220e-7 Identity = 28/58 (48.28%), Postives = 35/58 (60.34%), Query Frame = 1 Query: 37 GVAAGIARYFGIETGLVKAAFIVATFFGGFGIFAYIAGWALIPKEHHPDPRPVVLNGG 210 GVA GI YFGI++ +V+ AFI+ TF GG G F Y+ GW +P E P L GG Sbjct: 102 GVAGGIGAYFGIDSVIVRIAFILLTFLGGAGPFLYLIGWLALPTEDSPSVIAKALGGG 159
BLAST of mRNA_M-pyrifera_M_contig108958.1876.1 vs. uniprot
Match: A0A7J9ZU01_9ACTN (PspC domain-containing protein n=1 Tax=Streptosporangiales bacterium TaxID=2604148 RepID=A0A7J9ZU01_9ACTN) HSP 1 Score: 54.7 bits (130), Expect = 1.350e-7 Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 1 Query: 1 RRLRRAA-GSTGPGVAAGIARYFGIETGLVKAAFIVATFFGGFGIFAYIAGWALIPKE 171 R+LRR G GVA+GI Y ++ +++ VATFFGG G+F Y+AGW LIP+E Sbjct: 12 RKLRRTRDGRIIAGVASGIGAYVRLDANIIRLVLAVATFFGGAGVFIYVAGWLLIPEE 69
BLAST of mRNA_M-pyrifera_M_contig108958.1876.1 vs. uniprot
Match: A0A7K2A8X6_9ACTN (PspC domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K2A8X6_9ACTN) HSP 1 Score: 57.8 bits (138), Expect = 1.650e-7 Identity = 33/77 (42.86%), Postives = 45/77 (58.44%), Query Frame = 1 Query: 37 GVAAGIARYFGIETGLVKAAFIVATFFGGFGIFAYIAGWALIPKEHHPDPRPVVLNG-------GVAAIVIGTLALI 246 GVA GI YFGI++ +V+ AFIV TF GG G F Y+ GW ++P+E P L G +AA+V+ L L+ Sbjct: 60 GVAGGIGAYFGIDSVIVRIAFIVLTFLGGAGPFLYLIGWLVLPREDAPSVIANALAGDSEGRFRSLAAVVLIGLGLL 136
BLAST of mRNA_M-pyrifera_M_contig108958.1876.1 vs. uniprot
Match: A0A6B1E738_9ACTN (PspC domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1E738_9ACTN) HSP 1 Score: 57.0 bits (136), Expect = 3.060e-7 Identity = 29/54 (53.70%), Postives = 36/54 (66.67%), Query Frame = 1 Query: 37 GVAAGIARYFGIETGLVKAAFIVATFFGGFGIFAYIAGWALIPKEHHPDPRPVV 198 GVA GI YFGI++ +V+ AFIV TF GG G F Y+ GW +PKE D R +V Sbjct: 48 GVAGGIGAYFGIDSVIVRIAFIVLTFLGGAGPFLYLIGWLALPKE---DSRSIV 98
BLAST of mRNA_M-pyrifera_M_contig108958.1876.1 vs. uniprot
Match: A0A3G8ZNC4_9ACTN (PspC domain-containing protein n=1 Tax=Nakamurella antarctica TaxID=1902245 RepID=A0A3G8ZNC4_9ACTN) HSP 1 Score: 56.6 bits (135), Expect = 4.210e-7 Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 1 Query: 37 GVAAGIARYFGIETGLVKAAFIVATFFGGFGIFAYIAGWALIPKE 171 GVA G+ RY G++ L++ AF+V T FGGFG+FAY AGW L+ + Sbjct: 31 GVAGGVGRYLGVDPVLLRVAFVVLTIFGGFGLFAYAAGWLLLAAD 75
BLAST of mRNA_M-pyrifera_M_contig108958.1876.1 vs. uniprot
Match: UPI001E4345B9 (PspC domain-containing protein n=1 Tax=Nocardioides okcheonensis TaxID=2894081 RepID=UPI001E4345B9) HSP 1 Score: 54.3 bits (129), Expect = 2.680e-6 Identity = 29/73 (39.73%), Postives = 43/73 (58.90%), Query Frame = 1 Query: 37 GVAAGIARYFGIETGLVKAAFIVATFFGGFGIFAYIAGWALIPKEHHPDPRPVVL---NGGVAAIVIGTLALI 246 GVA G+AR+ I+ +V+ +VA FFGG G+ AY+ W L+P+E D P+ L N +A +G AL+ Sbjct: 46 GVAGGLARHLDIDPIIVRVVLVVAVFFGGAGLLAYVGAWILVPEEGTSD-EPLGLDRRNRSIALAAVGVFALL 117
BLAST of mRNA_M-pyrifera_M_contig108958.1876.1 vs. uniprot
Match: A0A2V8SF53_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8SF53_9BACT) HSP 1 Score: 53.1 bits (126), Expect = 2.690e-6 Identity = 22/45 (48.89%), Postives = 32/45 (71.11%), Query Frame = 1 Query: 37 GVAAGIARYFGIETGLVKAAFIVATFFGGFGIFAYIAGWALIPKE 171 GVAAG A YFG++ L + FI+ F GFG+ AY+ GWA++P++ Sbjct: 16 GVAAGFANYFGVDPVLARLVFILLAFVNGFGLVAYVIGWAIMPRD 60
BLAST of mRNA_M-pyrifera_M_contig108958.1876.1 vs. uniprot
Match: A0A1H4TE32_9ACTN (Phage shock protein PspC (Stress-responsive transcriptional regulator) n=2 Tax=Nocardioides exalbidus TaxID=402596 RepID=A0A1H4TE32_9ACTN) HSP 1 Score: 54.3 bits (129), Expect = 2.700e-6 Identity = 30/73 (41.10%), Postives = 45/73 (61.64%), Query Frame = 1 Query: 37 GVAAGIARYFGIETGLVKAAFIVATFFGGFGIFAYIAGWALIPKEHHPDPRPVVL---NGGVAAIVIGTLALI 246 GVA G+AR+ I+ +V+ A +VA FFGG G+ AY+ W L+P+E D P+ L N +A +G LA++ Sbjct: 58 GVAGGLARHLDIDPIIVRVALVVAVFFGGAGLLAYVGAWVLVPEEGTND-EPLGLDRRNRSLALAGVGVLAVL 129
BLAST of mRNA_M-pyrifera_M_contig108958.1876.1 vs. uniprot
Match: A0A4Q2RYT9_9ACTN (PspC domain-containing protein n=2 Tax=Nocardioides oleivorans TaxID=273676 RepID=A0A4Q2RYT9_9ACTN) HSP 1 Score: 54.3 bits (129), Expect = 2.700e-6 Identity = 30/73 (41.10%), Postives = 45/73 (61.64%), Query Frame = 1 Query: 37 GVAAGIARYFGIETGLVKAAFIVATFFGGFGIFAYIAGWALIPKEHHPDPRPVVL---NGGVAAIVIGTLALI 246 GVA G+AR+ I+ +V+ A +VA FFGG G+ AY+ W L+P+E D P+ L N +A +G LA++ Sbjct: 53 GVAGGLARHLDIDPIIVRVALVVAVFFGGAGLLAYVGAWVLVPEEGTND-EPLGLDRRNRSLALAGVGVLAVL 124 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108958.1876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig108958.1876.1 >prot_M-pyrifera_M_contig108958.1876.1 ID=prot_M-pyrifera_M_contig108958.1876.1|Name=mRNA_M-pyrifera_M_contig108958.1876.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp RRLRRAAGSTGPGVAAGIARYFGIETGLVKAAFIVATFFGGFGIFAYIAGback to top mRNA from alignment at M-pyrifera_M_contig108958:2..316- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig108958.1876.1 ID=mRNA_M-pyrifera_M_contig108958.1876.1|Name=mRNA_M-pyrifera_M_contig108958.1876.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=315bp|location=Sequence derived from alignment at M-pyrifera_M_contig108958:2..316- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig108958:2..316- >mRNA_M-pyrifera_M_contig108958.1876.1 ID=mRNA_M-pyrifera_M_contig108958.1876.1|Name=mRNA_M-pyrifera_M_contig108958.1876.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig108958:2..316- (Macrocystis pyrifera P11B4 male)back to top |