mRNA_M-pyrifera_M_contig108957.1875.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108957.1875.1
Unique NamemRNA_M-pyrifera_M_contig108957.1875.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig108957.1875.1 vs. uniprot
Match: A0A7V3LGV5_9ACTN (Hsp20/alpha crystallin family protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V3LGV5_9ACTN)

HSP 1 Score: 103 bits (258), Expect = 5.840e-26
Identity = 49/96 (51.04%), Postives = 67/96 (69.79%), Query Frame = 1
Query:   46 ERSSFNPAVDIHETDDGFEMSVELAGMKPEDINVEVHDGMLRVSGERHSEREETQGKYSRVERTYGSFSRQMALPDGVDDSMVSASMDNGVLKLNI 333
            ER S+ P++D+ ETDD  ++  ELAGM P DIN+EV D +L VSGER  E E  + KY R+ER YG+FSR +ALP  VD+  + A  +NG+L++ I
Sbjct:   32 ERQSWTPSIDVIETDDSIKLKAELAGMDPADINIEVQDNVLTVSGERRFEEEVKEDKYYRIERRYGAFSRSIALPQTVDEEKIEAKYENGILEITI 127          
BLAST of mRNA_M-pyrifera_M_contig108957.1875.1 vs. uniprot
Match: A0A7X7SNR4_9ACTN (Hsp20/alpha crystallin family protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X7SNR4_9ACTN)

HSP 1 Score: 103 bits (257), Expect = 8.490e-26
Identity = 53/110 (48.18%), Postives = 74/110 (67.27%), Query Frame = 1
Query:   13 RLIDEAFERPIERSSFNPAVDIHETDDGFEMSVELAGMKPEDINVEVHDGMLRVSGERHSEREETQGKYSRVERTYGSFSRQMALPDGVDDSMVSASMDNGVLKLNIVTP 342
            RL+      P+ER S+ P++D+ ET DG +   +LAGMKPEDI++EV D +L +SGER  E +  + KY R+ER YGSFSR +ALP GV    + A+ +NGVL  ++V P
Sbjct:   21 RLMGRFGTEPVERQSWIPSIDVVETKDGIKFQADLAGMKPEDIHLEVEDNVLTISGERRFEEKVEEDKYYRIERRYGSFSRSIALPQGVRTDSIQANYENGVL--DVVVP 128          
BLAST of mRNA_M-pyrifera_M_contig108957.1875.1 vs. uniprot
Match: A0A7X7GGG3_9ACTN (Hsp20/alpha crystallin family protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X7GGG3_9ACTN)

HSP 1 Score: 103 bits (256), Expect = 1.200e-25
Identity = 51/105 (48.57%), Postives = 72/105 (68.57%), Query Frame = 1
Query:   13 RLIDEAFERPIERSSFNPAVDIHETDDGFEMSVELAGMKPEDINVEVHDGMLRVSGERHSEREETQGKYSRVERTYGSFSRQMALPDGVDDSMVSASMDNGVLKL 327
            RL+      P+ER S+ P++D+ ET +G +   ELAGM+PEDI++EV D +L +SGER  E E  + KY R+ER YGSFSR +ALP GV    + A+ +NGVL++
Sbjct:   21 RLMGRFGTEPVERQSWIPSIDVVETKEGIKFQAELAGMRPEDIHLEVEDNVLTISGERRFEHEVEEDKYYRIERRYGSFSRSIALPQGVLSENIEANYENGVLEV 125          
BLAST of mRNA_M-pyrifera_M_contig108957.1875.1 vs. uniprot
Match: UPI000CD9EEDF (Hsp20/alpha crystallin family protein n=1 Tax=Gracilimonas amylolytica TaxID=1749045 RepID=UPI000CD9EEDF)

HSP 1 Score: 101 bits (251), Expect = 4.320e-25
Identity = 50/108 (46.30%), Postives = 71/108 (65.74%), Query Frame = 1
Query:   16 LIDEAFERPIE--RSSFNPAVDIHETDDGFEMSVELAGMKPEDINVEVHDGMLRVSGERHSEREETQGKYSRVERTYGSFSRQMALPDGVDDSMVSASMDNGVLKLNI 333
            ++DE F   +   + +F P VDI ET++ F++ V L G+K +DIN+++ +G L +SGER  E EET   Y RVE +YGSFSR   LPD +D+  + A  DNGVL +NI
Sbjct:   21 ILDEFFNDSLNYRKDTFMPTVDISETENDFQVEVSLPGLKKDDINIDLENGRLTISGERKLENEETGKNYHRVESSYGSFSRSFQLPDSIDEESIEAKYDNGVLNINI 128          
BLAST of mRNA_M-pyrifera_M_contig108957.1875.1 vs. uniprot
Match: UPI00036239FC (Hsp20/alpha crystallin family protein n=1 Tax=Gracilimonas tropica TaxID=454600 RepID=UPI00036239FC)

HSP 1 Score: 98.2 bits (243), Expect = 7.000e-24
Identity = 51/108 (47.22%), Postives = 73/108 (67.59%), Query Frame = 1
Query:   16 LIDEAFERPI--ERSSFNPAVDIHETDDGFEMSVELAGMKPEDINVEVHDGMLRVSGERHSEREETQGKYSRVERTYGSFSRQMALPDGVDDSMVSASMDNGVLKLNI 333
            ++DE F   I  ++ SF P+VDI ET++ FE+SV L GMK EDI+V++ DG L +SGER  E+E+    Y R+E  +G+FSR   LPD +D+S + A  +NGVL + I
Sbjct:   21 ILDEFFNDSIRYKKDSFVPSVDISETENSFEISVALPGMKKEDISVDLDDGRLTISGERKFEKEDEGKNYHRLESGFGTFSRSFQLPDNIDESSIEAKYENGVLDITI 128          
BLAST of mRNA_M-pyrifera_M_contig108957.1875.1 vs. uniprot
Match: A0A2D9FRB2_9BACT (Heat-shock protein Hsp20 n=3 Tax=Balneolaceae TaxID=1813606 RepID=A0A2D9FRB2_9BACT)

HSP 1 Score: 97.4 bits (241), Expect = 1.400e-23
Identity = 49/108 (45.37%), Postives = 72/108 (66.67%), Query Frame = 1
Query:   16 LIDEAFERPIE--RSSFNPAVDIHETDDGFEMSVELAGMKPEDINVEVHDGMLRVSGERHSEREETQGKYSRVERTYGSFSRQMALPDGVDDSMVSASMDNGVLKLNI 333
            ++DE F   ++  + SF P+VDI ETD+ FE+ V L GMK +DIN+++ +G L +SGER  E EE+   Y R+E  +GSFSR   LPD +D+  ++A  +NGVL + I
Sbjct:   21 ILDEFFNDSLKYRKDSFIPSVDISETDNSFEIEVALPGMKKDDINIDLDNGRLTISGERTFENEESNKNYHRLESGFGSFSRSFQLPDSIDEESINAKYENGVLDITI 128          
BLAST of mRNA_M-pyrifera_M_contig108957.1875.1 vs. uniprot
Match: A0A3D0I3J7_9DELT (SHSP domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3D0I3J7_9DELT)

HSP 1 Score: 97.1 bits (240), Expect = 3.460e-23
Identity = 53/111 (47.75%), Postives = 75/111 (67.57%), Query Frame = 1
Query:    7 LFRLIDEAF-ERPIERSSFNPAVDIHETDDGFEMSVELAGMKPEDINVEVHDGMLRVSGERHSEREETQGKYSR-VERTYGSFSRQMALPDGVDDSMVSASMDNGVLKLNI 333
            L RL++E F ERP  R    PA+D+HE D+ + ++VEL G++ ED++VE+ DG+L V GE+ SEREE +G+ +R VER+YGSFSR   LP       + AS  +G+L L I
Sbjct:   39 LSRLMEEVFGERPFARGELVPALDLHEADNEYVVTVELPGVRKEDVSVEMTDGVLTVRGEKKSEREEKKGERTRWVERSYGSFSRSFTLPANATPDRIDASYKDGILTLRI 149          
BLAST of mRNA_M-pyrifera_M_contig108957.1875.1 vs. uniprot
Match: A0A537ZYQ9_9ACTN (Hsp20/alpha crystallin family protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A537ZYQ9_9ACTN)

HSP 1 Score: 95.1 bits (235), Expect = 5.420e-23
Identity = 45/93 (48.39%), Postives = 62/93 (66.67%), Query Frame = 1
Query:   64 PAVDIHETDDGFEMSVELAGMKPEDINVEVHDGMLRVSGERHSEREETQGKYSRVERTYGSFSRQMALPDGVDDSMVSASMDNGVLKLNIVTP 342
            PA+D+ ETDD   +  +L G+  +D+N+E+ DG+L VSGER +E EE +  Y RVER YG FSR ++LP G+D   V A  D GVL++ I  P
Sbjct:    2 PAMDLVETDDHLVLRADLPGLDKDDVNIEIKDGVLTVSGERQAEHEERKDGYHRVERAYGGFSRSLSLPQGIDAEQVQADFDKGVLEVRIPKP 94          
BLAST of mRNA_M-pyrifera_M_contig108957.1875.1 vs. uniprot
Match: A0A7C3E2K2_9BACT (Hsp20/alpha crystallin family protein n=1 Tax=Bryobacterales bacterium TaxID=2026791 RepID=A0A7C3E2K2_9BACT)

HSP 1 Score: 95.9 bits (237), Expect = 6.110e-23
Identity = 46/105 (43.81%), Postives = 72/105 (68.57%), Query Frame = 1
Query:   19 IDEAFERPIERSSFNPAVDIHETDDGFEMSVELAGMKPEDINVEVHDGMLRVSGERHSEREETQGKYSRVERTYGSFSRQMALPDGVDDSMVSASMDNGVLKLNI 333
            ++  F++P     ++PAVDI E ++   ++ +L G+K +D+++++ DG+L +SGER  E EE +G Y R+ER YGSF R  +LPD VD   VSA  DNGVLK+++
Sbjct:   25 LNRFFDQPASARPWSPAVDIVEDENELTLTADLPGIKMDDLDIKIEDGVLTLSGERKFENEEKKGGYHRIERAYGSFRRAFSLPDTVDAEKVSARFDNGVLKVSL 129          
BLAST of mRNA_M-pyrifera_M_contig108957.1875.1 vs. uniprot
Match: A0A1M4V364_9BACT (Heat shock protein Hsp20 n=1 Tax=Aliifodinibius roseus TaxID=1194090 RepID=A0A1M4V364_9BACT)

HSP 1 Score: 95.5 bits (236), Expect = 7.990e-23
Identity = 48/108 (44.44%), Postives = 72/108 (66.67%), Query Frame = 1
Query:   16 LIDEAFERPIE--RSSFNPAVDIHETDDGFEMSVELAGMKPEDINVEVHDGMLRVSGERHSEREETQGKYSRVERTYGSFSRQMALPDGVDDSMVSASMDNGVLKLNI 333
            ++DE F   +   R++F P++DI ETD+ F +S EL GMK EDIN+ + +  L +SGER  ++EE   K+ RVE  YGSF+R   LPD VD+  + AS ++G+L ++I
Sbjct:   21 IMDEFFNEAVSARRNNFTPSIDISETDNQFLISAELPGMKKEDININLENSRLTISGERSFKKEEEGKKFHRVETRYGSFNRSFQLPDNVDEESIEASYEDGLLNISI 128          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108957.1875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V3LGV5_9ACTN5.840e-2651.04Hsp20/alpha crystallin family protein n=1 Tax=Acti... [more]
A0A7X7SNR4_9ACTN8.490e-2648.18Hsp20/alpha crystallin family protein n=1 Tax=Acti... [more]
A0A7X7GGG3_9ACTN1.200e-2548.57Hsp20/alpha crystallin family protein n=1 Tax=Acti... [more]
UPI000CD9EEDF4.320e-2546.30Hsp20/alpha crystallin family protein n=1 Tax=Grac... [more]
UPI00036239FC7.000e-2447.22Hsp20/alpha crystallin family protein n=1 Tax=Grac... [more]
A0A2D9FRB2_9BACT1.400e-2345.37Heat-shock protein Hsp20 n=3 Tax=Balneolaceae TaxI... [more]
A0A3D0I3J7_9DELT3.460e-2347.75SHSP domain-containing protein n=1 Tax=Deltaproteo... [more]
A0A537ZYQ9_9ACTN5.420e-2348.39Hsp20/alpha crystallin family protein n=1 Tax=Acti... [more]
A0A7C3E2K2_9BACT6.110e-2343.81Hsp20/alpha crystallin family protein n=1 Tax=Bryo... [more]
A0A1M4V364_9BACT7.990e-2344.44Heat shock protein Hsp20 n=1 Tax=Aliifodinibius ro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108957contigM-pyrifera_M_contig108957:11..361 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score97.8
Seed ortholog evalue3.5e-18
Seed eggNOG ortholog1121930.AQXG01000004_gene2945
KEGG koko:K13993
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the small heat shock protein (HSP20) family
EggNOG OGs4NSJB@976,COG0071@1,COG0071@2
COG Functional cat.O
Best tax levelBacteroidetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Exons1
Model size351
Cds size351
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815599.4290862-CDS-M-pyrifera_M_contig108957:10..3611622815599.4290862-CDS-M-pyrifera_M_contig108957:10..361Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108957 11..361 +
1692277481.4233997-CDS-M-pyrifera_M_contig108957:10..3611692277481.4233997-CDS-M-pyrifera_M_contig108957:10..361Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108957 11..361 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108957.1875.1prot_M-pyrifera_M_contig108957.1875.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108957 11..361 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108957.1875.1

>prot_M-pyrifera_M_contig108957.1875.1 ID=prot_M-pyrifera_M_contig108957.1875.1|Name=mRNA_M-pyrifera_M_contig108957.1875.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=117bp
QSLFRLIDEAFERPIERSSFNPAVDIHETDDGFEMSVELAGMKPEDINVE
VHDGMLRVSGERHSEREETQGKYSRVERTYGSFSRQMALPDGVDDSMVSA
SMDNGVLKLNIVTPTP*
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mRNA from alignment at M-pyrifera_M_contig108957:11..361+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108957.1875.1 ID=mRNA_M-pyrifera_M_contig108957.1875.1|Name=mRNA_M-pyrifera_M_contig108957.1875.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=351bp|location=Sequence derived from alignment at M-pyrifera_M_contig108957:11..361+ (Macrocystis pyrifera P11B4 male)
CAATCGCTGTTCAGGCTCATTGACGAGGCATTCGAGCGGCCTATTGAGCG ATCGAGCTTCAACCCCGCAGTGGATATTCATGAGACCGATGATGGCTTTG AGATGAGTGTTGAGCTTGCAGGCATGAAGCCCGAGGACATCAACGTGGAG GTTCACGACGGAATGCTGCGCGTGAGTGGCGAACGTCACAGCGAGCGGGA GGAGACCCAGGGCAAGTACTCTCGCGTGGAGCGCACCTATGGGAGCTTCT CTCGCCAGATGGCACTGCCAGATGGCGTGGATGACAGCATGGTCTCGGCC AGCATGGACAACGGAGTCCTCAAGCTGAACATCGTCACTCCAACGCCATA G
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108957:11..361+

>mRNA_M-pyrifera_M_contig108957.1875.1 ID=mRNA_M-pyrifera_M_contig108957.1875.1|Name=mRNA_M-pyrifera_M_contig108957.1875.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=702bp|location=Sequence derived from alignment at M-pyrifera_M_contig108957:11..361+ (Macrocystis pyrifera P11B4 male)
CAATCGCTGTTCAGGCTCATTGACGAGGCATTCGAGCGGCCTATTGAGCG
ATCGAGCTTCAACCCCGCAGTGGATATTCATGAGACCGATGATGGCTTTG
AGATGAGTGTTGAGCTTGCAGGCATGAAGCCCGAGGACATCAACGTGGAG
GTTCACGACGGAATGCTGCGCGTGAGTGGCGAACGTCACAGCGAGCGGGA
GGAGACCCAGGGCAAGTACTCTCGCGTGGAGCGCACCTATGGGAGCTTCT
CTCGCCAGATGGCACTGCCAGATGGCGTGGATGACAGCATGGTCTCGGCC
AGCATGGACAACGGAGTCCTCAAGCTGAACATCGTCACTCCAACGCCATA
GCAATCGCTGTTCAGGCTCATTGACGAGGCATTCGAGCGGCCTATTGAGC
GATCGAGCTTCAACCCCGCAGTGGATATTCATGAGACCGATGATGGCTTT
GAGATGAGTGTTGAGCTTGCAGGCATGAAGCCCGAGGACATCAACGTGGA
GGTTCACGACGGAATGCTGCGCGTGAGTGGCGAACGTCACAGCGAGCGGG
AGGAGACCCAGGGCAAGTACTCTCGCGTGGAGCGCACCTATGGGAGCTTC
TCTCGCCAGATGGCACTGCCAGATGGCGTGGATGACAGCATGGTCTCGGC
CAGCATGGACAACGGAGTCCTCAAGCTGAACATCGTCACTCCAACGCCAT
AG
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