mRNA_M-pyrifera_M_contig108945.1871.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig108945.1871.1
Unique Name	mRNA_M-pyrifera_M_contig108945.1871.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig108945.1871.1 vs. uniprot
Match: A0A848UFB2_9ACTN (DUF169 domain-containing protein n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A848UFB2_9ACTN)

HSP 1 Score: 218 bits (555), Expect = 2.070e-69
Identity = 102/121 (84.30%), Postives = 106/121 (87.60%), Query Frame = 1

Query:    1 RLDPPDIALIYATPAQMILLINGLQWSGYKNFEWGCVGESSCSDSWGRALSTGEPSVSIPCFAERRYGGVQDDELLMATPPSFLPKAIAGLEALSRNGLRYPIPSYGVQIDAAAGLGASYG 363
            RLDPPDI LIYATPAQMIL INGLQW+GYK  EWGCVGESSC+DSWGRAL TGEPS+SIPCFAERRYGGV +DELLMA PPSFLPK IAGL ALS NGLRYPIP YGV  DA AGLG SYG
Sbjct:  151 RLDPPDICLIYATPAQMILFINGLQWTGYKKLEWGCVGESSCADSWGRALRTGEPSLSIPCFAERRYGGVMEDELLMAIPPSFLPKVIAGLTALSANGLRYPIPPYGVNADARAGLGVSYG 271

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BLAST of mRNA_M-pyrifera_M_contig108945.1871.1 vs. uniprot
Match: A0A2E6PEN8_9GAMM (Uncharacterized protein n=7 Tax=root TaxID=1 RepID=A0A2E6PEN8_9GAMM)

HSP 1 Score: 216 bits (551), Expect = 6.140e-69
Identity = 100/120 (83.33%), Postives = 107/120 (89.17%), Query Frame = 1

Query:    1 RLDPPDIALIYATPAQMILLINGLQWSGYKNFEWGCVGESSCSDSWGRALSTGEPSVSIPCFAERRYGGVQDDELLMATPPSFLPKAIAGLEALSRNGLRYPIPSYGVQIDAAAGLGASY 360
            RL+PPDI LIYATPAQMIL INGLQWSGYK  EWGCVGESSC+DSWGRALSTGEPS+SIPCFAERRYGGV +DELLMA PP +LPK IAGLEALSRNGLRYPIPSYG+  D  AG+G SY
Sbjct:  141 RLNPPDICLIYATPAQMILFINGLQWSGYKKLEWGCVGESSCADSWGRALSTGEPSLSIPCFAERRYGGVMEDELLMALPPHYLPKVIAGLEALSRNGLRYPIPSYGLNNDVRAGMGVSY 260

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BLAST of mRNA_M-pyrifera_M_contig108945.1871.1 vs. uniprot
Match: A0A2E8K6P1_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E8K6P1_9GAMM)

HSP 1 Score: 216 bits (551), Expect = 7.400e-69
Identity = 100/120 (83.33%), Postives = 106/120 (88.33%), Query Frame = 1

Query:    1 RLDPPDIALIYATPAQMILLINGLQWSGYKNFEWGCVGESSCSDSWGRALSTGEPSVSIPCFAERRYGGVQDDELLMATPPSFLPKAIAGLEALSRNGLRYPIPSYGVQIDAAAGLGASY 360
            RL+PPDI LIYATPAQMIL INGLQW+GYK  EWGCVGESSC+DSWGRAL TGEPS+SIPCFAERRYGGV +DELLMA PP FLPK IAGLE LSRNGLRYPIPSYG+  DA AGLG SY
Sbjct:  141 RLNPPDICLIYATPAQMILFINGLQWTGYKKLEWGCVGESSCADSWGRALKTGEPSLSIPCFAERRYGGVMEDELLMAIPPGFLPKVIAGLEQLSRNGLRYPIPSYGISNDARAGLGVSY 260

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BLAST of mRNA_M-pyrifera_M_contig108945.1871.1 vs. uniprot
Match: A0A523M5E9_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A523M5E9_9GAMM)

HSP 1 Score: 215 bits (548), Expect = 1.920e-68
Identity = 99/120 (82.50%), Postives = 106/120 (88.33%), Query Frame = 1

Query:    1 RLDPPDIALIYATPAQMILLINGLQWSGYKNFEWGCVGESSCSDSWGRALSTGEPSVSIPCFAERRYGGVQDDELLMATPPSFLPKAIAGLEALSRNGLRYPIPSYGVQIDAAAGLGASY 360
            RLDPPDIALIYATPAQMIL INGLQW+GYK  EWGCVGESSC+DSWGRAL+TGEPS+SIPCFAERRYGGV +DELLMA PP +LPK IAGLE LSRNGLRYPIP YGV  D  AG+G SY
Sbjct:  143 RLDPPDIALIYATPAQMILFINGLQWTGYKKLEWGCVGESSCADSWGRALATGEPSLSIPCFAERRYGGVMEDELLMAIPPGYLPKVIAGLEHLSRNGLRYPIPGYGVNNDVRAGMGVSY 262

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BLAST of mRNA_M-pyrifera_M_contig108945.1871.1 vs. uniprot
Match: A0A2E6LQJ6_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E6LQJ6_9GAMM)

HSP 1 Score: 214 bits (545), Expect = 5.000e-68
Identity = 98/121 (80.99%), Postives = 107/121 (88.43%), Query Frame = 1

Query:    1 RLDPPDIALIYATPAQMILLINGLQWSGYKNFEWGCVGESSCSDSWGRALSTGEPSVSIPCFAERRYGGVQDDELLMATPPSFLPKAIAGLEALSRNGLRYPIPSYGVQIDAAAGLGASYG 363
            RLDPPDI LIYATPAQMIL INGLQW+GY+  EWGCVGESSC+DSWGRAL+TGEPS+SIPCFAERRYGGV +DELLMA PP+FLPK +AGLEALSRNGLRYPI  YGV  D  AG+G SYG
Sbjct:  141 RLDPPDICLIYATPAQMILFINGLQWTGYRKLEWGCVGESSCADSWGRALATGEPSLSIPCFAERRYGGVMEDELLMALPPAFLPKTLAGLEALSRNGLRYPIAPYGVNNDVRAGMGVSYG 261

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BLAST of mRNA_M-pyrifera_M_contig108945.1871.1 vs. uniprot
Match: A0A2E8XZK5_9ACTN (Uncharacterized protein n=4 Tax=Actinobacteria TaxID=201174 RepID=A0A2E8XZK5_9ACTN)

HSP 1 Score: 214 bits (545), Expect = 5.160e-68
Identity = 99/121 (81.82%), Postives = 107/121 (88.43%), Query Frame = 1

Query:    1 RLDPPDIALIYATPAQMILLINGLQWSGYKNFEWGCVGESSCSDSWGRALSTGEPSVSIPCFAERRYGGVQDDELLMATPPSFLPKAIAGLEALSRNGLRYPIPSYGVQIDAAAGLGASYG 363
            RL PPDI LIYATPAQMIL INGLQW+G+K  EWGCVGESSC+DSWGRAL+TGEPS+SIPCFAERRYGGV +DELLMA PP FLP  IAGLE+LS+NGLRYPIP YGVQ DA AGLG SYG
Sbjct:  143 RLSPPDICLIYATPAQMILFINGLQWTGFKKLEWGCVGESSCADSWGRALATGEPSLSIPCFAERRYGGVMEDELLMAIPPRFLPGVIAGLESLSKNGLRYPIPPYGVQSDATAGLGRSYG 263

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BLAST of mRNA_M-pyrifera_M_contig108945.1871.1 vs. uniprot
Match: A0A2E8K7V1_9GAMM (Uncharacterized protein n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E8K7V1_9GAMM)

HSP 1 Score: 214 bits (544), Expect = 6.070e-68
Identity = 98/120 (81.67%), Postives = 106/120 (88.33%), Query Frame = 1

Query:    1 RLDPPDIALIYATPAQMILLINGLQWSGYKNFEWGCVGESSCSDSWGRALSTGEPSVSIPCFAERRYGGVQDDELLMATPPSFLPKAIAGLEALSRNGLRYPIPSYGVQIDAAAGLGASY 360
            RLDPPDI LIYATPAQMILLINGLQW+GYK  EWGCVGESSC+DSWGRAL TGEPS+S+PCFAERRYGGV +DELL+A PPSFLPK +AGLEALSRNGLRYPI  YGV  D  AG+G SY
Sbjct:  138 RLDPPDICLIYATPAQMILLINGLQWTGYKKLEWGCVGESSCADSWGRALKTGEPSLSLPCFAERRYGGVMEDELLIAIPPSFLPKTVAGLEALSRNGLRYPIAPYGVNNDVRAGMGVSY 257

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BLAST of mRNA_M-pyrifera_M_contig108945.1871.1 vs. uniprot
Match: A0A2E5M996_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E5M996_9GAMM)

HSP 1 Score: 213 bits (543), Expect = 9.750e-68
Identity = 97/121 (80.17%), Postives = 105/121 (86.78%), Query Frame = 1

Query:    1 RLDPPDIALIYATPAQMILLINGLQWSGYKNFEWGCVGESSCSDSWGRALSTGEPSVSIPCFAERRYGGVQDDELLMATPPSFLPKAIAGLEALSRNGLRYPIPSYGVQIDAAAGLGASYG 363
            RLDPPDI LIYATPAQMIL INGLQW+GYK   WGCVGES+C+DSWGRAL+TGEPS+SIPCFAERRYGGV DDELLMA PP FLPK IAGL+ LSRNGLRYP+P YGV  D  AG+G SYG
Sbjct:  141 RLDPPDICLIYATPAQMILFINGLQWTGYKKLSWGCVGESACADSWGRALATGEPSLSIPCFAERRYGGVMDDELLMALPPHFLPKTIAGLDQLSRNGLRYPVPPYGVNNDVRAGMGVSYG 261

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BLAST of mRNA_M-pyrifera_M_contig108945.1871.1 vs. uniprot
Match: A0A1Z9TR69_9PROT (Uncharacterized protein n=1 Tax=Proteobacteria bacterium TMED261 TaxID=1986846 RepID=A0A1Z9TR69_9PROT)

HSP 1 Score: 213 bits (542), Expect = 1.380e-67
Identity = 97/120 (80.83%), Postives = 106/120 (88.33%), Query Frame = 1

Query:    1 RLDPPDIALIYATPAQMILLINGLQWSGYKNFEWGCVGESSCSDSWGRALSTGEPSVSIPCFAERRYGGVQDDELLMATPPSFLPKAIAGLEALSRNGLRYPIPSYGVQIDAAAGLGASY 360
            RL+PPDI LIYATPAQMIL INGLQWSGYK  EWGCVGES+C+DSWGRALSTGEPS+SIPCFAERRYGGV +DELLMA PPSFLPK + GL+ALS+NGLRYPIP YGV  D  AG+G SY
Sbjct:  141 RLNPPDICLIYATPAQMILFINGLQWSGYKKLEWGCVGESACADSWGRALSTGEPSLSIPCFAERRYGGVMEDELLMAIPPSFLPKTLQGLDALSKNGLRYPIPQYGVNNDVRAGMGVSY 260

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BLAST of mRNA_M-pyrifera_M_contig108945.1871.1 vs. uniprot
Match: A0A6L7MXZ8_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L7MXZ8_9GAMM)

HSP 1 Score: 213 bits (542), Expect = 1.470e-67
Identity = 98/121 (80.99%), Postives = 107/121 (88.43%), Query Frame = 1

Query:    1 RLDPPDIALIYATPAQMILLINGLQWSGYKNFEWGCVGESSCSDSWGRALSTGEPSVSIPCFAERRYGGVQDDELLMATPPSFLPKAIAGLEALSRNGLRYPIPSYGVQIDAAAGLGASYG 363
            RL+PPDIALIYATPAQMIL INGLQWSGYK  EWGCVGES+C+DSWGRAL+TGEPS+SIPCFAERRYGGV +DELLMA PP++LPK IAGL  LSRNGLRYPIP YGV  D  AG+G SYG
Sbjct:  143 RLNPPDIALIYATPAQMILFINGLQWSGYKKLEWGCVGESACADSWGRALATGEPSLSIPCFAERRYGGVMEDELLMAIPPAYLPKVIAGLGHLSRNGLRYPIPQYGVNNDVRAGMGVSYG 263

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig108945.1871.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig108945.1871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A848UFB2_9ACTN	2.070e-69	84.30	DUF169 domain-containing protein n=1 Tax=Ilumatoba...	[more]
A0A2E6PEN8_9GAMM	6.140e-69	83.33	Uncharacterized protein n=7 Tax=root TaxID=1 RepID...	[more]
A0A2E8K6P1_9GAMM	7.400e-69	83.33	Uncharacterized protein n=1 Tax=Gammaproteobacteri...	[more]
A0A523M5E9_9GAMM	1.920e-68	82.50	Uncharacterized protein n=1 Tax=Gammaproteobacteri...	[more]
A0A2E6LQJ6_9GAMM	5.000e-68	80.99	Uncharacterized protein n=1 Tax=Gammaproteobacteri...	[more]
A0A2E8XZK5_9ACTN	5.160e-68	81.82	Uncharacterized protein n=4 Tax=Actinobacteria Tax...	[more]
A0A2E8K7V1_9GAMM	6.070e-68	81.67	Uncharacterized protein n=2 Tax=Gammaproteobacteri...	[more]
A0A2E5M996_9GAMM	9.750e-68	80.17	Uncharacterized protein n=1 Tax=Gammaproteobacteri...	[more]
A0A1Z9TR69_9PROT	1.380e-67	80.83	Uncharacterized protein n=1 Tax=Proteobacteria bac...	[more]
A0A6L7MXZ8_9GAMM	1.470e-67	80.99	Uncharacterized protein n=1 Tax=Gammaproteobacteri...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig108945	contig	M-pyrifera_M_contig108945:2..367 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Bacteria
Seed ortholog score	196.8
Seed ortholog evalue	5.8e-48
Seed eggNOG ortholog	1297865.APJD01000020_gene84
Preferred name	MA20_36865
Hectar predicted targeting category	other localisation
EggNOG free text desc.	Uncharacterised ArCR, COG2043
EggNOG OGs	1NR18@1224,2TVGP@28211,3JU0D@41294,COG2043@1,COG2043@2
COG Functional cat.	S
Best tax level	Bradyrhizobiaceae
Best eggNOG OG	NA\|NA\|NA
Exons	1
Model size	366
Cds size	366
Stop	1
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815599.1593792-CDS-M-pyrifera_M_contig108945:1..367	1622815599.1593792-CDS-M-pyrifera_M_contig108945:1..367	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig108945 2..367 +
1692277481.3065133-CDS-M-pyrifera_M_contig108945:1..367	1692277481.3065133-CDS-M-pyrifera_M_contig108945:1..367	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig108945 2..367 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig108945.1871.1	prot_M-pyrifera_M_contig108945.1871.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig108945 2..367 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig108945:2..367+
coding sequence from alignment at M-pyrifera_M_contig108945:2..367+

protein sequence of mRNA_M-pyrifera_M_contig108945.1871.1

>prot_M-pyrifera_M_contig108945.1871.1 ID=prot_M-pyrifera_M_contig108945.1871.1|Name=mRNA_M-pyrifera_M_contig108945.1871.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=122bp
RLDPPDIALIYATPAQMILLINGLQWSGYKNFEWGCVGESSCSDSWGRAL
STGEPSVSIPCFAERRYGGVQDDELLMATPPSFLPKAIAGLEALSRNGLR
YPIPSYGVQIDAAAGLGASYG*

mRNA from alignment at M-pyrifera_M_contig108945:2..367+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig108945.1871.1 ID=mRNA_M-pyrifera_M_contig108945.1871.1|Name=mRNA_M-pyrifera_M_contig108945.1871.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig108945:2..367+ (Macrocystis pyrifera P11B4 male)
CGCCTCGACCCGCCGGACATCGCCCTCATCTACGCCACCCCGGCACAGAT
GATCCTGCTCATCAACGGGCTGCAGTGGTCGGGCTACAAGAACTTCGAGT
GGGGCTGTGTCGGAGAGTCGTCGTGTTCCGACTCATGGGGCCGAGCGCTC
TCGACCGGCGAGCCCAGTGTCTCGATTCCCTGCTTTGCCGAGCGTCGCTA
CGGCGGCGTGCAAGACGACGAGCTGCTGATGGCGACCCCGCCGTCGTTCC
TGCCCAAGGCCATCGCCGGGCTCGAGGCCCTCTCCCGAAATGGCCTGCGC
TACCCGATCCCCAGCTACGGCGTGCAGATCGACGCCGCAGCTGGGTTGGG
CGCGTCATATGGCTGA

Coding sequence (CDS) from alignment at M-pyrifera_M_contig108945:2..367+

>mRNA_M-pyrifera_M_contig108945.1871.1 ID=mRNA_M-pyrifera_M_contig108945.1871.1|Name=mRNA_M-pyrifera_M_contig108945.1871.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig108945:2..367+ (Macrocystis pyrifera P11B4 male)
CGCCTCGACCCGCCGGACATCGCCCTCATCTACGCCACCCCGGCACAGAT
GATCCTGCTCATCAACGGGCTGCAGTGGTCGGGCTACAAGAACTTCGAGT
GGGGCTGTGTCGGAGAGTCGTCGTGTTCCGACTCATGGGGCCGAGCGCTC
TCGACCGGCGAGCCCAGTGTCTCGATTCCCTGCTTTGCCGAGCGTCGCTA
CGGCGGCGTGCAAGACGACGAGCTGCTGATGGCGACCCCGCCGTCGTTCC
TGCCCAAGGCCATCGCCGGGCTCGAGGCCCTCTCCCGAAATGGCCTGCGC
TACCCGATCCCCAGCTACGGCGTGCAGATCGACGCCGCAGCTGGGTTGGG
CGCGTCATATGGCTGACGCCTCGACCCGCCGGACATCGCCCTCATCTACG
CCACCCCGGCACAGATGATCCTGCTCATCAACGGGCTGCAGTGGTCGGGC
TACAAGAACTTCGAGTGGGGCTGTGTCGGAGAGTCGTCGTGTTCCGACTC
ATGGGGCCGAGCGCTCTCGACCGGCGAGCCCAGTGTCTCGATTCCCTGCT
TTGCCGAGCGTCGCTACGGCGGCGTGCAAGACGACGAGCTGCTGATGGCG
ACCCCGCCGTCGTTCCTGCCCAAGGCCATCGCCGGGCTCGAGGCCCTCTC
CCGAAATGGCCTGCGCTACCCGATCCCCAGCTACGGCGTGCAGATCGACG
CCGCAGCTGGGTTGGGCGCGTCATATGGCTGA