mRNA_M-pyrifera_M_contig1089.1868.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1089.1868.1
Unique NamemRNA_M-pyrifera_M_contig1089.1868.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig1089.1868.1 vs. uniprot
Match: D7G2D9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2D9_ECTSI)

HSP 1 Score: 218 bits (555), Expect = 1.270e-68
Identity = 108/116 (93.10%), Postives = 112/116 (96.55%), Query Frame = 1
Query:   10 GVKWRYRVVCRDGAFVRHGIELTSAFLFNLPWHSVVEVLERRINDAGLPRLKIAEGWISEVLNPLSGQRGPVVEIVRLLRPLLYRVVLPDGAVVRRTVELASSQVKTLAAGETVQV 357
            G +WRYRVVCRDGAFVRHGIELTS FLFNLPWHSVVEVLERRINDAGLPRLKIAEGWISEVLNPLSGQRGPVVEIV+LL+PL YRVVLPDGAVVRRTVELASSQVKT+AAGE VQV
Sbjct:  114 GARWRYRVVCRDGAFVRHGIELTSPFLFNLPWHSVVEVLERRINDAGLPRLKIAEGWISEVLNPLSGQRGPVVEIVKLLQPLQYRVVLPDGAVVRRTVELASSQVKTIAAGELVQV 229          
BLAST of mRNA_M-pyrifera_M_contig1089.1868.1 vs. uniprot
Match: A0A8J2X1W1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X1W1_9STRA)

HSP 1 Score: 140 bits (353), Expect = 5.340e-38
Identity = 71/118 (60.17%), Postives = 85/118 (72.03%), Query Frame = 1
Query:    4 DTGVKWRYRVVCRDGAFVRHGIELTSAFLFNLPWHSVVEVLERRINDAGLPRLKIAEGWISEVLNPLSGQRGPVVEIVRLLRPLLYRVVLPDGAVVRRTVELASSQVKTLAAGETVQV 357
            D G  WRY VVCRDGA+VR G+EL S   F LP  +V EV ERR+N+ GL RL+  +GWISE LNPLSGQRGPV E + +  PL +RVVL DGAVVR TVEL+S+ V  +  G TV+V
Sbjct:  111 DVGHAWRYVVVCRDGAYVRRGLELASTHAFTLPKDAVFEVRERRVNEQGLARLRTDDGWISEDLNPLSGQRGPVAEPLPVAAPLTFRVVLRDGAVVRETVELSSAIVSVIPCGRTVEV 228          
BLAST of mRNA_M-pyrifera_M_contig1089.1868.1 vs. uniprot
Match: K8YNW0_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YNW0_NANGC)

HSP 1 Score: 131 bits (330), Expect = 2.420e-36
Identity = 64/119 (53.78%), Postives = 86/119 (72.27%), Query Frame = 1
Query:    1 ADTGVKWRYRVVCRDGAFVRHGIELTSAFLFNLPWHSVVEVLERRINDAGLPRLKIAEGWISEVLNPLSGQRGPVVEIVRLLRPLLYRVVLPDGAVVRRTVELASSQVKTLAAGETVQV 357
            A T   + YRVVC DGA+VR G+EL+S  L+ +   S +EVLER +N+ GL RL+  +GWISE+LNPLSGQRGP+VE+V L  PL +R+  PDGA+VR  +EL+S  V T+ AG+ + V
Sbjct:   25 AFTQAAFHYRVVCEDGAYVRAGLELSSRHLYTIGSQSTIEVLERCVNNQGLARLRTRDGWISEMLNPLSGQRGPIVELVPLQHPLKFRITFPDGALVRSGIELSSGVVGTIPAGQEIVV 143          
BLAST of mRNA_M-pyrifera_M_contig1089.1868.1 vs. uniprot
Match: W7TQ97_9STRA (E3 ubiquitin-protein ligase mdm2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQ97_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.100e-34
Identity = 64/119 (53.78%), Postives = 86/119 (72.27%), Query Frame = 1
Query:    1 ADTGVKWRYRVVCRDGAFVRHGIELTSAFLFNLPWHSVVEVLERRINDAGLPRLKIAEGWISEVLNPLSGQRGPVVEIVRLLRPLLYRVVLPDGAVVRRTVELASSQVKTLAAGETVQV 357
            A T   + YRVVC DGA+VR G+EL+S  L+ +   S +EVLER +N+ GL RL+  +GWISE+LNPLSGQRGP+VE+V L  PL +R+  PDGA+VR  +EL+S  V T+ AG+ + V
Sbjct:   15 AFTQAAFHYRVVCEDGAYVRAGLELSSRHLYTIGSQSTIEVLERCVNNQGLARLRTRDGWISEMLNPLSGQRGPIVELVPLQHPLKFRITFPDGALVRSGIELSSGVVGTIPAGQEIVV 133          
BLAST of mRNA_M-pyrifera_M_contig1089.1868.1 vs. uniprot
Match: A0A7S2S0R0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S0R0_9STRA)

HSP 1 Score: 129 bits (323), Expect = 4.760e-33
Identity = 60/116 (51.72%), Postives = 86/116 (74.14%), Query Frame = 1
Query:   16 KWRYRVVCRDGAFVRHGIELTSAFLFNLPWHSVVEVLERRINDAGLPRLKIAE--GWISEVLNPLSGQRGPVVEIVRLLRPLLYRVVLPDGAVVRRTVELASSQVKTLAAGETVQV 357
            +W YRVVC DGA VR G+EL+S   + +  H+++E+ ER+IN+ GL RL+ A+  GWISE LNPLSG RGPVV ++++ RPL + V+LP+GAVVRRT+EL+S   + +  GE + +
Sbjct:  140 RWLYRVVCADGAVVRSGLELSSDHKYTVRQHAIIEISERKINEQGLARLRTADERGWISEQLNPLSGHRGPVVSLLKMPRPLRFNVILPEGAVVRRTMELSSMITRVVPTGEVISI 255          
BLAST of mRNA_M-pyrifera_M_contig1089.1868.1 vs. uniprot
Match: A0A836CML9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CML9_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.600e-32
Identity = 64/119 (53.78%), Postives = 82/119 (68.91%), Query Frame = 1
Query:    1 ADTGVKWRYRVVCRDGAFVRHGIELTSAFLFNLPWHSVVEVLERRINDAGLPRLKIAEGWISEVLNPLSGQRGPVVEIVRLLRPLLYRVVLPDGAVVRRTVELASSQVKTLAAGETVQV 357
            A    +WRY+VVCR GA VR G  L S+ +  LP+ S++EV ER IN+ G+ RL+ A GWISE LNPLSGQRG +VE++ L+ PL + VV  DG VV R VELAS+ ++ L AG  V V
Sbjct:  114 ATVAARWRYKVVCRLGALVREGPSLASSAVEELPYLSIIEVSERLINEQGIARLRTASGWISEALNPLSGQRGAIVELIPLIAPLRFVVVQGDGVVVTRGVELASTFIRRLEAGALVDV 232          
BLAST of mRNA_M-pyrifera_M_contig1089.1868.1 vs. uniprot
Match: A0A7S2V8C6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V8C6_9STRA)

HSP 1 Score: 123 bits (308), Expect = 2.930e-31
Identity = 60/102 (58.82%), Postives = 72/102 (70.59%), Query Frame = 1
Query:   10 GVKWRYRVVCRDGAFVRHGIELTSAFLFNLPWHSVVEVLERRINDAGLPRLKIAEGWISEVLNPLSGQRGPVVEIVRLLRPLLYRVVLPDGAVVRRTVELAS 315
            G KWRYRVVC  GA VR G+ELTSA+   +  HS+ E  ERR+N  GL RL++ +GW+SE LNPLSGQRG V ++V L  PL Y VV P GAVVR + EL S
Sbjct:   98 GAKWRYRVVCPTGAVVREGLELTSAYCRTIEVHSIFEASERRVNRQGLARLRLEDGWVSEALNPLSGQRGLVAQLVPLPSPLRYEVVHPSGAVVRSSPELTS 199          
BLAST of mRNA_M-pyrifera_M_contig1089.1868.1 vs. uniprot
Match: A0A7S3P682_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P682_9STRA)

HSP 1 Score: 112 bits (280), Expect = 7.270e-27
Identity = 55/113 (48.67%), Postives = 77/113 (68.14%), Query Frame = 1
Query:   19 WRYRVVCRDGAFVRHGIELTSAFLFNLPWHSVVEVLERRINDAGLPRLKIA--------------EGWISEVLNPLSGQRGPVVEIVRLLRPLLYRVVLPDGAVVRRTVELAS 315
            W ++V C  GA+VR G+EL +  +  LP+ +VV+VL +R+N AGLPRL+IA              +GW S  LNPLSGQRG +++ + L RP++YR+VLP GAV+R+ VELAS
Sbjct:   96 WYWKVTCPAGAYVREGLELATRHVGTLPYGAVVQVLRQRVNQAGLPRLQIAAHVYDPNTDSYQKLQGWCSTALNPLSGQRGAILQPLSLPRPMVYRIVLPQGAVIRQDVELAS 208          
BLAST of mRNA_M-pyrifera_M_contig1089.1868.1 vs. uniprot
Match: A0A448Z6X6_9STRA (RING-type domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z6X6_9STRA)

HSP 1 Score: 103 bits (256), Expect = 3.340e-23
Identity = 57/129 (44.19%), Postives = 76/129 (58.91%), Query Frame = 1
Query:   19 WRYRVVCRDGAFVRHGIELTSAFLFNLPWHSVVEVLERRINDAGLPRLK----------------IAEGWISEVLNPLSGQRGPVVEIVRLLRPLLYRVVLPDGAVVRRTVELASSQVKTLAAGETVQV 357
            W +RV C  GAFVR G++L +  +  LP+ S+V V  R IN+ GL RL+                +  GW SE+LNPLSGQRG V + +    P +YRV LP GAVVRR +EL S Q++ L  G T++V
Sbjct:  420 WIWRVTCPSGAFVREGLDLHTRHIETLPYGSLVRVTRRCINNQGLSRLRTSGYLSLKTHEGNSRVLVTGWCSELLNPLSGQRGIVAQPLPFPVPAIYRVTLPMGAVVRRDIELMSPQIEILPFGSTIKV 548          
BLAST of mRNA_M-pyrifera_M_contig1089.1868.1 vs. uniprot
Match: A0A7S2KL76_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KL76_9STRA)

HSP 1 Score: 100 bits (248), Expect = 3.710e-22
Identity = 54/121 (44.63%), Postives = 74/121 (61.16%), Query Frame = 1
Query:   19 WRYRVVCRDGAFVRHGIELTSAFLFNLPWHSVVEVLERRINDAGLPRLKI----------------AEGWISEVLNPLSGQRGPVVEIVRLLRPLLYRVVLPDGAVVRRTVELASSQVKTL 333
            W +RV  R GA+VR G+EL S  +  LP+ S V V ++ IN  GL RLKI                 EGWISE LNPLSGQ G +V+ +   RPL ++V+L +GAV+R  VEL+S +++T+
Sbjct:  297 WNWRVTYRSGAYVRDGLELNSKQVAVLPFGSFVSVKQKTINAMGLSRLKIKAKVSKTSHGSEDSEVVEGWISEKLNPLSGQSGAIVKSLPFHRPLAFKVILAEGAVIRNGVELSSREIRTV 417          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1089.1868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7G2D9_ECTSI1.270e-6893.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8J2X1W1_9STRA5.340e-3860.17Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
K8YNW0_NANGC2.420e-3653.78Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
W7TQ97_9STRA1.100e-3453.78E3 ubiquitin-protein ligase mdm2 n=1 Tax=Nannochlo... [more]
A0A7S2S0R0_9STRA4.760e-3351.72Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A836CML9_9STRA1.600e-3253.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V8C6_9STRA2.930e-3158.82Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3P682_9STRA7.270e-2748.67Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A448Z6X6_9STRA3.340e-2344.19RING-type domain-containing protein n=1 Tax=Pseudo... [more]
A0A7S2KL76_9STRA3.710e-2244.63Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1089contigM-pyrifera_M_contig1089:25733..26627 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.5
Seed ortholog evalue5.7e-16
Seed eggNOG ortholog35128.Thaps8915
Hectar predicted targeting categoryother localisation
EggNOG OGs2DAWK@1,2TKXZ@2759,2XC49@2836
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-00_005790.1
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons2
Model size357
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815598.8668976-CDS-M-pyrifera_M_contig1089:25732..259691622815598.8668976-CDS-M-pyrifera_M_contig1089:25732..25969Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1089 25733..25969 -
1692277481.1782362-CDS-M-pyrifera_M_contig1089:25732..259691692277481.1782362-CDS-M-pyrifera_M_contig1089:25732..25969Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1089 25733..25969 -
1622815598.9306471-CDS-M-pyrifera_M_contig1089:26507..266271622815598.9306471-CDS-M-pyrifera_M_contig1089:26507..26627Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1089 26508..26627 -
1692277481.1895816-CDS-M-pyrifera_M_contig1089:26507..266271692277481.1895816-CDS-M-pyrifera_M_contig1089:26507..26627Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1089 26508..26627 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1089.1868.1prot_M-pyrifera_M_contig1089.1868.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1089 25733..26627 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1089.1868.1

>prot_M-pyrifera_M_contig1089.1868.1 ID=prot_M-pyrifera_M_contig1089.1868.1|Name=mRNA_M-pyrifera_M_contig1089.1868.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp
ADTGVKWRYRVVCRDGAFVRHGIELTSAFLFNLPWHSVVEVLERRINDAG
LPRLKIAEGWISEVLNPLSGQRGPVVEIVRLLRPLLYRVVLPDGAVVRRT
VELASSQVKTLAAGETVQV
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mRNA from alignment at M-pyrifera_M_contig1089:25733..26627-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1089.1868.1 ID=mRNA_M-pyrifera_M_contig1089.1868.1|Name=mRNA_M-pyrifera_M_contig1089.1868.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=895bp|location=Sequence derived from alignment at M-pyrifera_M_contig1089:25733..26627- (Macrocystis pyrifera P11B4 male)
GCGGACACAGGGGTCAAGTGGCGCTACCGGGTCGTGTGCAGGGACGGAGC TTTCGTGAGGCACGGCATAGAGCTCACGAGCGCCTTTCTTTTCAATCTCC CCTGGCACTCGGTCGTCGAGGTGAGCTTACGCGCGTATAATACAGTGATA TTTACTGTAGTTTATACCTACGAATAGAAAACAAGGTGTAGAAAACCCAC ACGCCGTGCCCCCCTCCCCCGTGAGGTTCTAGCATTGAGAGAAGGATGAT TCCGTATCGGGTTGGCCTGTTCGATTTTTAAGCCCCTCCTCCGTCTCGAA AATGATGCATGGTCAATGGTCAAATGGCTGAGGCAAGCGACAAAATGAGT ACGCCGTCCCCTTCCCCCCGCTGTCCCCCTCCTCCTCCCCTCCCCCCCTG GAACAAACGTGATGAGCGCCCAATTGTTGGCGGCGTCTATACTAGGAATA GGAACGGCGCTCCGTCTCGAAATAGGTGCGTGGTCAATGGTCAAATGCCT AAGGCAAGCAACAAATATGTACCCCCCCCCCTCCCCCCACCCCATCTCCT CCCTCCCCCCACCCCTCCTCCTCCCTCCCCCCACCCCCTCACCCAACCCC CCTCCGCCCCCCCCCCTACCTTCCTTCCCCTCCCGGTCTACACCGATCGC GCCCACAGGTTCTAGAGAGACGGATCAACGACGCGGGTCTGCCGCGGCTT AAAATAGCCGAGGGATGGATCAGCGAGGTTCTTAACCCCCTCTCCGGACA GCGAGGGCCTGTTGTTGAGATTGTGAGGCTGCTGCGGCCGCTGCTGTATC GCGTGGTGTTGCCCGACGGAGCCGTGGTGCGGCGGACCGTGGAGCTGGCG TCGAGCCAGGTCAAAACCTTAGCCGCGGGGGAGACGGTGCAGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1089:25733..26627-

>mRNA_M-pyrifera_M_contig1089.1868.1 ID=mRNA_M-pyrifera_M_contig1089.1868.1|Name=mRNA_M-pyrifera_M_contig1089.1868.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig1089:25733..26627- (Macrocystis pyrifera P11B4 male)
GCGGACACAGGGGTCAAGTGGCGCTACCGGGTCGTGTGCAGGGACGGAGC
TTTCGTGAGGCACGGCATAGAGCTCACGAGCGCCTTTCTTTTCAATCTCC
CCTGGCACTCGGTCGTCGAGGCGGACACAGGGGTCAAGTGGCGCTACCGG
GTCGTGTGCAGGGACGGAGCTTTCGTGAGGCACGGCATAGAGCTCACGAG
CGCCTTTCTTTTCAATCTCCCCTGGCACTCGGTCGTCGAGGTTCTAGAGA
GACGGATCAACGACGCGGGTCTGCCGCGGCTTAAAATAGCCGAGGGATGG
ATCAGCGAGGTTCTTAACCCCCTCTCCGGACAGCGAGGGCCTGTTGTTGA
GATTGTGAGGCTGCTGCGGCCGCTGCTGTATCGCGTGGTGTTGCCCGACG
GAGCCGTGGTGCGGCGGACCGTGGAGCTGGCGTCGAGCCAGGTCAAAACC
TTAGCCGCGGGGGAGACGGTGCAGGTGGTTCTAGAGAGACGGATCAACGA
CGCGGGTCTGCCGCGGCTTAAAATAGCCGAGGGATGGATCAGCGAGGTTC
TTAACCCCCTCTCCGGACAGCGAGGGCCTGTTGTTGAGATTGTGAGGCTG
CTGCGGCCGCTGCTGTATCGCGTGGTGTTGCCCGACGGAGCCGTGGTGCG
GCGGACCGTGGAGCTGGCGTCGAGCCAGGTCAAAACCTTAGCCGCGGGGG
AGACGGTGCAGGTG
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