mRNA_M-pyrifera_M_contig1089.1867.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1089.1867.1
Unique NamemRNA_M-pyrifera_M_contig1089.1867.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig1089.1867.1 vs. uniprot
Match: D7G3W1_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W1_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 4.900e-44
Identity = 74/87 (85.06%), Postives = 82/87 (94.25%), Query Frame = 1 
Query:    1 MCLAEVPFFYLSGPLISLVGVRGVIGLTQLAYLTRFIYYSVIREPWWVLPAEVLHGLTFAAMWAATTDYAHDIAPANMRTTIQGAVT 261
            MC+AEVPFFYLSGPLI  VGVRGVI LTQ+AYLTRFIYYSV+R+PWWVLPAEVLHGLTFAAMWAATT+YAH IAPA++RTTIQG V+
Sbjct:  334 MCIAEVPFFYLSGPLIRRVGVRGVIALTQVAYLTRFIYYSVLRKPWWVLPAEVLHGLTFAAMWAATTEYAHGIAPAHLRTTIQGVVS 420
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BLAST of mRNA_M-pyrifera_M_contig1089.1867.1 vs. uniprot
Match: A0A6H5K6H4_9PHAE (MFS_1_like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6H4_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 2.210e-38
Identity = 67/75 (89.33%), Postives = 71/75 (94.67%), Query Frame = 1 
Query:    1 MCLAEVPFFYLSGPLISLVGVRGVIGLTQLAYLTRFIYYSVIREPWWVLPAEVLHGLTFAAMWAATTDYAHDIAP 225
            MC+AEVPFFYLSGPLI  VGVRGVI LTQ+AYLTRFIYYSV+REPWWVLPAEVLHGLTFAAMWAATT+YAH IAP
Sbjct:  389 MCIAEVPFFYLSGPLIRRVGVRGVIALTQVAYLTRFIYYSVLREPWWVLPAEVLHGLTFAAMWAATTEYAHGIAP 463
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BLAST of mRNA_M-pyrifera_M_contig1089.1867.1 vs. uniprot
Match: A0A6H5JEM5_9PHAE (MFS_1_like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEM5_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 7.060e-38
Identity = 64/75 (85.33%), Postives = 68/75 (90.67%), Query Frame = 1 
Query:    1 MCLAEVPFFYLSGPLISLVGVRGVIGLTQLAYLTRFIYYSVIREPWWVLPAEVLHGLTFAAMWAATTDYAHDIAP 225
            MC+AEVPFFYLSGPLI   G RGVI L QLAYLTRF+YYSV+REPWWVLP+EVLHGLTFAAMWAATTDYAH IAP
Sbjct:  338 MCMAEVPFFYLSGPLIRRAGARGVIALAQLAYLTRFVYYSVLREPWWVLPSEVLHGLTFAAMWAATTDYAHQIAP 412
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BLAST of mRNA_M-pyrifera_M_contig1089.1867.1 vs. uniprot
Match: D7G0X9_ECTSI (MFS_1_like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0X9_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 1.110e-36
Identity = 64/113 (56.64%), Postives = 80/113 (70.80%), Query Frame = 1 
Query:    1 MCLAEVPFFYLSGPLISLVGVRGVIGLTQLAYLTRFIYYS----------------VIREPWWVLPAEVLHGLTFAAMWAATTDYAHDIAPANMRTTIQGAVTGLHWGLGFGL 291
            M  +EVPFFY+SGPLI  +G R V+ L+Q+ Y+ R IYYS                V+ +PWWVLPAE+ HGLTFAAMW+ATTDYAH IAPA++RTT+Q +V GL  GLG+GL
Sbjct:    1 MSFSEVPFFYVSGPLIRTIGPRNVVALSQIGYIVRLIYYSKTSSVTNPLTGLRHLQVLSDPWWVLPAELFHGLTFAAMWSATTDYAHGIAPAHLRTTMQASVGGLKRGLGYGL 113
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BLAST of mRNA_M-pyrifera_M_contig1089.1867.1 vs. uniprot
Match: D7G0X7_ECTSI (MFS_1_like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0X7_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 8.440e-36
Identity = 54/75 (72.00%), Postives = 65/75 (86.67%), Query Frame = 1 
Query:    1 MCLAEVPFFYLSGPLISLVGVRGVIGLTQLAYLTRFIYYSVIREPWWVLPAEVLHGLTFAAMWAATTDYAHDIAP 225
            MCL+EVPFFY+SGPLI  +G R V+ L+Q+ Y+ R +YYSV+ +PWWVLPAE+LHGLTFAAMWAATTDYAH IAP
Sbjct:    1 MCLSEVPFFYVSGPLIRKIGPRNVVALSQIGYIVRLVYYSVLSDPWWVLPAELLHGLTFAAMWAATTDYAHGIAP 75
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BLAST of mRNA_M-pyrifera_M_contig1089.1867.1 vs. uniprot
Match: A0A6H5JI17_9PHAE (MFS_1_like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI17_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 1.050e-30
Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 1 
Query:    1 MCLAEVPFFYLSGPLISLVGVRGVIGLTQLAYLTRFIYYSVIREPWWVLPAEVLHGLTFAAMWAATTDYAHDIAPANMRTT 243
            MC  EVPFFY+SG  I  +G R V+ L+Q+ Y+ R +YYSV+ +PWWVLPAE+LHGLTFAAMWAATTDYAH IAP   +T+
Sbjct:  226 MCCGEVPFFYVSGSFIRKIGPRNVVALSQIGYIVRLVYYSVLWDPWWVLPAELLHGLTFAAMWAATTDYAHGIAPGRDQTS 306
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BLAST of mRNA_M-pyrifera_M_contig1089.1867.1 vs. uniprot
Match: D7G4M5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4M5_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 3.850e-30
Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 1 
Query:    1 MCLAEVPFFYLSGPLISLVGVRGVIGLTQLAYLTRFIYYSVIREPWWVLPAEVLHGLTFAAMWAATTDYAHDIAPANMRTT 243
            MC  EVPFFY+SG  I  +G R V+ L+Q+ Y+ R +YYSV+ +PWWVLPAE+LHGLTFAAMWAATTDYAH IAP   +T+
Sbjct:  285 MCCGEVPFFYVSGSFIRKIGPRNVVALSQIGYIVRLVYYSVLWDPWWVLPAELLHGLTFAAMWAATTDYAHGIAPGRDQTS 365
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BLAST of mRNA_M-pyrifera_M_contig1089.1867.1 vs. uniprot
Match: A0A7S0ZL95_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZL95_9RHOD)

HSP 1 Score: 107 bits (268), Expect = 1.480e-25
Identity = 48/97 (49.48%), Postives = 67/97 (69.07%), Query Frame = 1 
Query:    1 MCLAEVPFFYLSGPLISLVGVRGVIGLTQLAYLTRFIYYSVIREPWWVLPAEVLHGLTFAAMWAATTDYAHDIAPANMRTTIQGAVTGLHWGLGFGL 291
            MCL E+PFF+ +  L+S  GV GV+G+ Q AY  RF +YSV++ PW V+  EVLHG+T+ A+W  ++ +AH IAPA +  T Q  V  +HWG+GF L
Sbjct:  301 MCLGELPFFHYNEQLVSRFGVFGVLGIVQCAYCVRFFWYSVLQNPWNVVYVEVLHGITYGALWGTSSVFAHQIAPAGLEATAQSLVGLIHWGIGFTL 397
[Close]
BLAST of mRNA_M-pyrifera_M_contig1089.1867.1 vs. uniprot
Match: A9VAW9_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9VAW9_MONBE)

HSP 1 Score: 99.4 bits (246), Expect = 2.150e-22
Identity = 47/97 (48.45%), Postives = 64/97 (65.98%), Query Frame = 1 
Query:    1 MCLAEVPFFYLSGPLISLVGVRGVIGLTQLAYLTRFIYYSVIREPWWVLPAEVLHGLTFAAMWAATTDYAHDIAPANMRTTIQGAVTGLHWGLGFGL 291
            MC AEVP F+ SG +   +G  G + +T  A++ RF+ Y+ +  PW V+ +E LHGLTFA MW A T  A  IAP  + TT+QG V+GLH+GLG G+
Sbjct:  301 MCAAEVPMFWYSGAIFDRLGTTGCLVVTFCAFIVRFLIYAFMSNPWLVVASEPLHGLTFAVMWTAATRQAFAIAPQGLGTTMQGIVSGLHFGLGSGM 397
[Close]
BLAST of mRNA_M-pyrifera_M_contig1089.1867.1 vs. uniprot
Match: A0A8K0EMS7_BRALA (MFSD6 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0EMS7_BRALA)

HSP 1 Score: 97.4 bits (241), Expect = 1.270e-21
Identity = 43/93 (46.24%), Postives = 61/93 (65.59%), Query Frame = 1 
Query:    4 CLAEVPFFYLSGPLISLVGVRGVIGLTQLAYLTRFIYYSVIREPWWVLPAEVLHGLTFAAMWAATTDYAHDIAPANMRTTIQGAVTGLHWGLG 282
            C+AEVPFF+ SG LI  +  +GV  L+   +  RF++ S++  PWW +P EVLHG T+ AM+AA+T YA  IAP  M  T+QG +  +  G+G
Sbjct:  336 CIAEVPFFFFSGKLIEKISHKGVFSLSLFCFALRFLFLSLLVNPWWAIPVEVLHGTTYGAMFAASTTYASQIAPPGMEATMQGVMGAVFMGVG 428
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1089.1867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3W1_ECTSI4.900e-4485.06MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K6H4_9PHAE2.210e-3889.33MFS_1_like domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5JEM5_9PHAE7.060e-3885.33MFS_1_like domain-containing protein n=1 Tax=Ectoc... [more]
D7G0X9_ECTSI1.110e-3656.64MFS_1_like domain-containing protein n=1 Tax=Ectoc... [more]
D7G0X7_ECTSI8.440e-3672.00MFS_1_like domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5JI17_9PHAE1.050e-3064.20MFS_1_like domain-containing protein n=1 Tax=Ectoc... [more]
D7G4M5_ECTSI3.850e-3064.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S0ZL95_9RHOD1.480e-2549.48Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A9VAW9_MONBE2.150e-2248.45Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A8K0EMS7_BRALA1.270e-2146.24MFSD6 protein n=1 Tax=Branchiostoma lanceolatum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1089contigM-pyrifera_M_contig1089:19714..21402 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score160.6
Seed ortholog evalue3.6e-37
Seed eggNOG ortholog2880.D7G3W1
KEGG koko:K11367
Hectar predicted targeting categoryother localisation
EggNOG free text desc.MFS_1 like family
EggNOG OGsKOG3762@1,KOG3762@2759
Ec32 ortholog descriptionMajor facilitator superfamily domain
Ec32 orthologEc-23_001910.1
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021,ko03036
Exons3
Model size293
Cds size291
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1089.1867.1prot_M-pyrifera_M_contig1089.1867.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1089 19714..21402 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815598.809299-CDS-M-pyrifera_M_contig1089:19713..197781622815598.809299-CDS-M-pyrifera_M_contig1089:19713..19778Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1089 19714..19778 -
1692277481.1453278-CDS-M-pyrifera_M_contig1089:19713..197781692277481.1453278-CDS-M-pyrifera_M_contig1089:19713..19778Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1089 19714..19778 -
1622815598.821984-CDS-M-pyrifera_M_contig1089:20414..205201622815598.821984-CDS-M-pyrifera_M_contig1089:20414..20520Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1089 20415..20520 -
1692277481.1576865-CDS-M-pyrifera_M_contig1089:20414..205201692277481.1576865-CDS-M-pyrifera_M_contig1089:20414..20520Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1089 20415..20520 -
1622815598.832893-CDS-M-pyrifera_M_contig1089:21282..214021622815598.832893-CDS-M-pyrifera_M_contig1089:21282..21402Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1089 21283..21402 -
1692277481.1692522-CDS-M-pyrifera_M_contig1089:21282..214021692277481.1692522-CDS-M-pyrifera_M_contig1089:21282..21402Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1089 21283..21402 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1089.1867.1

>prot_M-pyrifera_M_contig1089.1867.1 ID=prot_M-pyrifera_M_contig1089.1867.1|Name=mRNA_M-pyrifera_M_contig1089.1867.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=97bp
MCLAEVPFFYLSGPLISLVGVRGVIGLTQLAYLTRFIYYSVIREPWWVLP
AEVLHGLTFAAMWAATTDYAHDIAPANMRTTIQGAVTGLHWGLGFGL
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mRNA from alignment at M-pyrifera_M_contig1089:19714..21402-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1089.1867.1 ID=mRNA_M-pyrifera_M_contig1089.1867.1|Name=mRNA_M-pyrifera_M_contig1089.1867.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1689bp|location=Sequence derived from alignment at M-pyrifera_M_contig1089:19714..21402- (Macrocystis pyrifera P11B4 male)
ATGTGTCTCGCGGAGGTGCCTTTTTTCTACCTCTCGGGGCCCTTGATTAG
CCTGGTGGGCGTGCGGGGCGTGATCGGTCTGACCCAACTGGCTTACCTCA
CGCGTTTCATCTACTACTCGGTGCGTGTCGATGGCTGGTACTTTAAGTAA
CAATCAGGATGGAGTTGGTCGCACGCATCTGTACGATGGCGTGCACGCAG
ATTTGTCGTATCCAACGACAAGCTCGTGCACGCTTTCAGCAGAGCAGTGT
TTCGTGGCGCGAAGAAGGCGCTGGTTACGTCCGCAGTGTTGATCGTCTTG
TGCTCTTCCTATATACCCGCACAAGGCGTTTGAGTCCTTCGTTTACTTGC
AAGTTTCATCCCCTGCTTTGATATTTGACGGACAACACCTACGTACCATT
TCAACCGTTTTATTGCTTGCTGTAGTTGCTGCCTGGTACCTGCTGCGCCC
TGTTCTTCTGCGCGTCTGCGTGCTGCTGTTGCGCACGACGCTTTGCTACA
GCCAAATGTCTGTCGAACGAGGGAATCGATCTGTCTAGAATGCCACCCGT
GGTTTCCTGCAACGATGTACTCCGCCCAGCTGTTGCCTGCCCACGTATTC
TGATGCGCCATCAACCACGAGTTTTGCGGGTCTCTCTTTGCCTTGCGGCG
AACCACTCTACCCCTAAAGATAAGAACCGTTCGTATGCTGATATTTCATC
CAAATTTCTTACCATGTATTTTTCGGGACATAGTTGTAGGAGATACGGCC
ATTCGCCGCGTAGGTTCATGATGAAGAACGATCAATCCGTGTACCACTCT
TGGTGGGGTTGGAACGCCTTGCAAAAGTTGAGCCTTCGCATGCAGTGAAC
CCGCGGGGACGGACCTTTCGGTTCTGATGCAGGTTATTCGAGAGCCGTGG
TGGGTGCTTCCTGCGGAGGTCTTACACGGTCTCACGTTCGCTGCCATGTG
GGCTGCAACTACTGACTATGCGCACGACATAGCGCCAGGTGCGTTGGGCA
GTCGACGAATACTGCCGTGCGAGTGTTTCGCGCGTAAAGCGATACTGTAG
CGGTGTTAACAAGGAAGCATACCACGAAGTCACTAATGTGTCCGGTTCTT
GCTGCATGCAGAGGAGTGGTAAGCTACGACCATGGTGAGGCCTCGTCTTT
GTTTCTTGTTCCGGTGACGCTGTGATGTGGTCGGAGCACCGTGCGCGGGG
TTGACTAGGTCATGGCGGCGATACAGTCTTCCTCAAGTGATGATTGACGA
GCCTGCTCGAGGTACTTATCGTCTACCTACTGTGCCAACTTGTGCAGAAG
ACAAGGAGAGGCGATGCGGGTACGTAGCCTATTACTTTTCTTCCACGAAG
GACACGTAAGTATGTTAGCAGTGCTGCCCCCTCCAGAGGGAGACCATTTC
TTGCTATTTTGCTACGCCACGTGTGGTTCAAGCCGCCCACCCCGTCTCGA
ACGCACGTACCAGGAGCGGAAGGTAAAAGCAGGGCGAAACCGCTGGCCAT
ACTTCCCCCTCCGGGCAACGTTTTCCTCCGGTTACTCGTGTTTTCACCCT
AACCACGCACGACGCGAGTTAACGACCGAAAATTCCCTTCAATCACGCGC
GTTAATCTCCTGCCACACTGGAAGCTAATATGAGGACAACAATACAAGGA
GCTGTCACGGGGCTCCACTGGGGGCTCGGGTTTGGGCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1089:19714..21402-

>mRNA_M-pyrifera_M_contig1089.1867.1 ID=mRNA_M-pyrifera_M_contig1089.1867.1|Name=mRNA_M-pyrifera_M_contig1089.1867.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig1089:19714..21402- (Macrocystis pyrifera P11B4 male)
ATGTGTCTCGCGGAGGTGCCTTTTTTCTACCTCTCGGGGCCCTTGATTAG
CCTGGTGGGCGTGCGGGGCGTGATCGGTCTGACCCAACTGGCTTACCTCA
CGCGTTTCATCTACTACTCGATGTGTCTCGCGGAGGTGCCTTTTTTCTAC
CTCTCGGGGCCCTTGATTAGCCTGGTGGGCGTGCGGGGCGTGATCGGTCT
GACCCAACTGGCTTACCTCACGCGTTTCATCTACTACTCGGTTATTCGAG
AGCCGTGGTGGGTGCTTCCTGCGGAGGTCTTACACGGTCTCACGTTCGCT
GCCATGTGGGCTGCAACTACTGACTATGCGCACGACATAGCGCCAGGTTA
TTCGAGAGCCGTGGTGGGTGCTTCCTGCGGAGGTCTTACACGGTCTCACG
TTCGCTGCCATGTGGGCTGCAACTACTGACTATGCGCACGACATAGCGCC
AGCTAATATGAGGACAACAATACAAGGAGCTGTCACGGGGCTCCACTGGG
GGCTCGGGTTTGGGCTGCTAATATGAGGACAACAATACAAGGAGCTGTCA
CGGGGCTCCACTGGGGGCTCGGGTTTGGGCTG
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