mRNA_M-pyrifera_M_contig108866.1861.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108866.1861.1
Unique NamemRNA_M-pyrifera_M_contig108866.1861.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig108866.1861.1 vs. uniprot
Match: A0A5A8ECY9_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8ECY9_CAFRO)

HSP 1 Score: 205 bits (522), Expect = 2.530e-58
Identity = 99/158 (62.66%), Postives = 117/158 (74.05%), Query Frame = 1
Query:    1 REHQTGEDMWTGFRTAEATDGLPIQRHLDADTFTPNTEVLSPNAPEPIVGTTTRADRFYPFAVPSTRPNSALNLLYVLLTSKSSPNNPCVFTVLGHQDGGEFLVHGDPRKELGPLTMPVFRSFAYAQTGELEEFRTGTGIPYWYNRRTGETYWEPPLP 474
            R  QTGE  + GFRTAEA  G      LDA  F  + E+++ N   PIVGTTT ADRFYPFAVPST PN+A +LLY+LLTSK+S N PC F  +GHQDGG+FL  G     +GPL+M V+RS A AQTGE+EEFRT TG+PYWYNRR+G+TYWEPPLP
Sbjct: 1013 RPDQTGEAFYAGFRTAEAVAGRRADPALDAAPFLAHEEIVTSNEAVPIVGTTTHADRFYPFAVPSTAPNAAADLLYILLTSKASANEPCTFAAIGHQDGGDFLWSGRGSGAMGPLSMHVYRSLAAAQTGEIEEFRTATGVPYWYNRRSGQTYWEPPLP 1170          
BLAST of mRNA_M-pyrifera_M_contig108866.1861.1 vs. uniprot
Match: A0A5A8DVV9_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DVV9_CAFRO)

HSP 1 Score: 205 bits (522), Expect = 2.540e-58
Identity = 99/158 (62.66%), Postives = 117/158 (74.05%), Query Frame = 1
Query:    1 REHQTGEDMWTGFRTAEATDGLPIQRHLDADTFTPNTEVLSPNAPEPIVGTTTRADRFYPFAVPSTRPNSALNLLYVLLTSKSSPNNPCVFTVLGHQDGGEFLVHGDPRKELGPLTMPVFRSFAYAQTGELEEFRTGTGIPYWYNRRTGETYWEPPLP 474
            R  QTGE  + GFRTAEA  G      LDA  F  + E+++ N   PIVGTTT ADRFYPFAVPST PN+A +LLY+LLTSK+S N PC F  +GHQDGG+FL  G     +GPL+M V+RS A AQTGE+EEFRT TG+PYWYNRR+G+TYWEPPLP
Sbjct: 1590 RPDQTGEAFYAGFRTAEAVAGRRADPALDAAPFLTHEEIVTSNEAVPIVGTTTHADRFYPFAVPSTAPNAAADLLYILLTSKASANEPCTFAAIGHQDGGDFLWSGRGSGAMGPLSMHVYRSLAAAQTGEIEEFRTATGVPYWYNRRSGQTYWEPPLP 1747          
BLAST of mRNA_M-pyrifera_M_contig108866.1861.1 vs. uniprot
Match: A0A7S1GB61_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GB61_9STRA)

HSP 1 Score: 131 bits (330), Expect = 6.340e-37
Identity = 61/101 (60.40%), Postives = 75/101 (74.26%), Query Frame = 1
Query:  154 TTRADRFYPFAVPSTRPNSALNLLYVLLTSKSSPNNPCVFTVLGHQDGGEFLVHGDPRKELGPLTMPVFRSFAYAQTGELEEFRTGTGIPYWYNRRTGETY 456
            TT A R Y F VPST  N+AL+  ++L+T+++S N PCVFT LG+QD G   + GDP  E+G L   V+RSFAYAQTGE+EEF T  G+PYWYNRRTGETY
Sbjct:    1 TTHAGREYAFCVPSTHQNTALDYYHLLVTAEASRNTPCVFTALGNQDAGMMGMRGDPSGEIGALPFTVYRSFAYAQTGEIEEFETAQGVPYWYNRRTGETY 101          
BLAST of mRNA_M-pyrifera_M_contig108866.1861.1 vs. uniprot
Match: A0A5D6XQ40_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQ40_9STRA)

HSP 1 Score: 144 bits (362), Expect = 8.480e-37
Identity = 69/159 (43.40%), Postives = 98/159 (61.64%), Query Frame = 1
Query:    1 REHQTGEDMWTGFRTAEATDGLPIQRHLDADTFTPNTEVLSPNAPEPIVGTTTRADRFYPFAVPSTRPNSALNLLYVLLTSKSSPNNPCVFTVLGHQDGGEFLVHGDPRKELGPLTMPVFRSFAYAQTGELEEFRTGTGIPYWYNRRTGETYWEPPLPP 477
            R  QTGE    GFRT    D   +   + +    PN+++LSPNAP      TT+ADR YPF +P+T+ N+ +  +++L   +SS N P VFT LG Q  GEF+ H DP   LGP T  V+RS+A+ Q+  +EEF T  G+ YWY++++GET+W  P+ P
Sbjct:  968 RPEQTGEAQALGFRTFWLVDAFAVPDDVPSVLVQPNSDILSPNAPSMNATVTTKADRVYPFCLPTTKENTPIEFIHLLWIGQSSRNQPQVFTTLGAQQPGEFMKHSDPGGALGPCTTVVYRSWAFMQSSPVEEFATADGVAYWYDKQSGETFWTRPIVP 1126          
BLAST of mRNA_M-pyrifera_M_contig108866.1861.1 vs. uniprot
Match: D7FML7_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FML7_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 2.260e-34
Identity = 74/157 (47.13%), Postives = 94/157 (59.87%), Query Frame = 1
Query:    1 REHQTGEDMWTGFRTAEATDGLPIQRHLDADTFTPNTEVLSPNAPEPIVGTTTRADRFYPFAVPSTRPNSALNLLYVLLTSKSSPNNPCVFTVLGHQDGGEFLVHGDPRKELGPLTMPVFRSFAYAQTGELEEFRTGTGIPYWYNRRTGETYWEPPL 471
            R  QTGE    GFRT+   D  P    LD   FTP+ +V++PN        TT ADR YPF  PS R N+ L+  ++LLT+  SPN   VFT LG Q+ GEF+   DP + +G     V+RS+A+ Q   LEEF T  GI YW++RRTGET+WE PL
Sbjct: 1256 RPEQTGEADSHGFRTSAHADAAPALPTLDPTAFTPSEDVVTPNLCSANRTVTTHADRSYPFCEPSNRSNTTLDFYHLLLTATCSPNKEQVFTNLGAQECGEFMRGSDPMRPMGHCIGIVYRSWAFLQRQVLEEFETDDGISYWFDRRTGETFWERPL 1412          
BLAST of mRNA_M-pyrifera_M_contig108866.1861.1 vs. uniprot
Match: A0A7S3HJJ1_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJJ1_9STRA)

HSP 1 Score: 131 bits (329), Expect = 2.300e-32
Identity = 69/157 (43.95%), Postives = 91/157 (57.96%), Query Frame = 1
Query:    1 REHQTGEDMWTGFRTAEATDGLPIQRHLDADTFTPNTEVLSPNAPEPIVGTTTRADRFYPFAVPSTRPNSALNLLYVLLTSKSSPNNPCVFTVLGHQDGGEFLVHGDPRKELGPLTMPVFRSFAYAQTGELEEFRTGTGIPYWYNRRTGETYWEPPL 471
            R  QTGE  + GFRT      L      D   F P   V+S N P+  +  TT AD  YPF  PSTR NS L+  ++LLT   SPN P VFT L  Q+ G FL + +    +G L + V+RS+A+ Q   ++EF T  G+PYWY+R+TG+T+WE PL
Sbjct:  445 RPEQTGEQAYHGFRTTAWAPMLLTHSETDPMVFVPGQGVVSLNTPKANLSYTTHADNTYPFCEPSTRDNSTLDFYHLLLTGVVSPNKPQVFTALTVQEPGAFLKNYNSNLPMGHLVVSVYRSWAFTQRDTIQEFVTDDGVPYWYHRKTGQTFWERPL 601          
BLAST of mRNA_M-pyrifera_M_contig108866.1861.1 vs. uniprot
Match: A0A2D4BMR4_PYTIN (WW domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BMR4_PYTIN)

HSP 1 Score: 130 bits (328), Expect = 3.180e-32
Identity = 64/157 (40.76%), Postives = 94/157 (59.87%), Query Frame = 1
Query:    7 HQTGEDMWTGFRTAEATDGLPIQRHLDADTFTPNTEVLSPNAPEPIVGTTTRADRFYPFAVPSTRPNSALNLLYVLLTSKSSPNNPCVFTVLGHQDGGEFLVHGDPRKELGPLTMPVFRSFAYAQTGELEEFRTGTGIPYWYNRRTGETYWEPPLPP 477
            +QTGE+   GFRT    D   +   +   T  PN +VLSPN        TT+ADRFYPF +P+T+ N+ +  +++L   +SS N P  FT LG Q  G+F+   +P   +GP T  ++RS+AY Q+   +EF T  GI YWY++++GET+W  P+ P
Sbjct:  987 NQTGEEASNGFRTFWLVDAFVVPDDVANVTVQPNADVLSPNTTSMNPTMTTKADRFYPFCIPTTKENTPIEYIHLLWIGQSSRNQPQTFTSLGAQQPGDFMRKSNPDGAMGPCTSVIYRSWAYMQSSPYDEFTTEDGIAYWYDKQSGETFWTRPILP 1143          
BLAST of mRNA_M-pyrifera_M_contig108866.1861.1 vs. uniprot
Match: A0A6G0WHL4_9STRA (WW domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHL4_9STRA)

HSP 1 Score: 125 bits (315), Expect = 1.770e-30
Identity = 67/157 (42.68%), Postives = 92/157 (58.60%), Query Frame = 1
Query:    1 REHQTGEDMWTGFRTAEATDGLPIQRHLDADTFTPNTEVLSPNAPEPIVGTTTRADRFYPFAVPSTRPNSALNLLYVLLTSKSSPNNPCVFTVLGHQDGGEFLVHGDPRKELGPLTMPVFRSFAYAQTGELEEFRTGTGIPYWYNRRTGETYWEPPL 471
            R  QT E+ + GFRT     GL +   + A  F P+ +VL+ N P      TTRADRFYPF  P+TR ++    +++L   KSS N P  FT LG QD G+F+   +    +G  T  ++RS+A+ Q+   EEF T  GI YWY++RTG TYWE P+
Sbjct:  870 RPEQTSEEAFFGFRTVLEWMGLDVPAEIRAVPFVPSGDVLTFNLPAFNTTITTRADRFYPFCEPTTRESTIAEFIHLLWMGKSSRNQPQCFTNLGSQDPGDFMKECNVDGAMGQCTPVIYRSWAFMQSSPFEEFVTDDGIAYWYDKRTGVTYWERPV 1026          
BLAST of mRNA_M-pyrifera_M_contig108866.1861.1 vs. uniprot
Match: A0A485K3W7_9STRA (Aste57867_472 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K3W7_9STRA)

HSP 1 Score: 125 bits (313), Expect = 3.300e-30
Identity = 68/157 (43.31%), Postives = 91/157 (57.96%), Query Frame = 1
Query:    1 REHQTGEDMWTGFRTAEATDGLPIQRHLDADTFTPNTEVLSPNAPEPIVGTTTRADRFYPFAVPSTRPNSALNLLYVLLTSKSSPNNPCVFTVLGHQDGGEFLVHGDPRKELGPLTMPVFRSFAYAQTGELEEFRTGTGIPYWYNRRTGETYWEPPL 471
            R  QT E+ + GFRT     GL +     A TF P+ +VL+ N P      TTRADR+YPF  P+TR ++    +++L   KSS N P  FT LG QD G+F+ + +    +G     V+RS+A+ Q    EEF T  GI YWY++RTG TYWE PL
Sbjct:  915 RPEQTSEEAYFGFRTILEWIGLSVPEETRAVTFVPSGDVLTFNTPAFNATVTTRADRYYPFCEPTTRESTIAEFMHLLWMGKSSRNQPQCFTNLGSQDPGDFMKNCNVDGAMGQCIPVVYRSWAFMQGSPFEEFVTDEGIAYWYDKRTGITYWERPL 1071          
BLAST of mRNA_M-pyrifera_M_contig108866.1861.1 vs. uniprot
Match: A0A0P1A940_PLAHL (Acyl-CoA-binding protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A940_PLAHL)

HSP 1 Score: 124 bits (310), Expect = 8.360e-30
Identity = 65/159 (40.88%), Postives = 88/159 (55.35%), Query Frame = 1
Query:    1 REHQTGEDMWTGFRTAEATDGLPIQRHLDADTFTPNTEVLSPNAPEPIVGTTTRADRFYPFAVPSTRPNSALNLLYVLLTSKSSPNNPCVFTVLGHQDGGEFLVHGDPRKELGPLTMPVFRSFAYAQTGELEEFRTGTGIPYWYNRRTGETYWEPPLPP 477
            R  QTGE+   GFRT   +D LP+   + +    P   +LSPN        TT  DR Y F VP+TR N+ +  L++L   +SS N P  FT L  Q  GEF++  +    LGP    V+RS+AY Q    +EF T  GI YWY+R+TG+T+W  P+ P
Sbjct:  948 RPEQTGEEESHGFRTFWLSDPLPVSDIVSSAYVVPTNAILSPNLASLNPTFTTHVDRKYQFCVPTTRANTPVEFLHLLWIGRSSRNQPQTFTTLSRQQPGEFMIKANSNGALGPCATVVYRSWAYLQDSPFDEFVTEDGIAYWYDRKTGDTFWTRPILP 1106          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108866.1861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A5A8ECY9_CAFRO2.530e-5862.66Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8DVV9_CAFRO2.540e-5862.66Uncharacterized protein n=4 Tax=Cafeteria roenberg... [more]
A0A7S1GB61_9STRA6.340e-3760.40Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A5D6XQ40_9STRA8.480e-3743.40Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
D7FML7_ECTSI2.260e-3447.13WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A7S3HJJ1_9STRA2.300e-3243.95Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A2D4BMR4_PYTIN3.180e-3240.76WW domain-containing protein n=1 Tax=Pythium insid... [more]
A0A6G0WHL4_9STRA1.770e-3042.68WW domain-containing protein n=1 Tax=Aphanomyces e... [more]
A0A485K3W7_9STRA3.300e-3043.31Aste57867_472 protein n=1 Tax=Aphanomyces stellatu... [more]
A0A0P1A940_PLAHL8.360e-3040.88Acyl-CoA-binding protein n=1 Tax=Plasmopara halste... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108866contigM-pyrifera_M_contig108866:2..478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.7
Seed ortholog evalue2.8e-28
Seed eggNOG ortholog2880.D7FML7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.positive regulation of myosin-light-chain-phosphatase activity
EggNOG OGsCOG0666@1,KOG0505@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size477
Cds size453
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815598.51918-UTR-M-pyrifera_M_contig108866:1..251622815598.51918-UTR-M-pyrifera_M_contig108866:1..25Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig108866 2..25 +
1692277481.0114622-UTR-M-pyrifera_M_contig108866:1..251692277481.0114622-UTR-M-pyrifera_M_contig108866:1..25Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig108866 2..25 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815598.533005-CDS-M-pyrifera_M_contig108866:25..4781622815598.533005-CDS-M-pyrifera_M_contig108866:25..478Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108866 26..478 +
1692277481.0229456-CDS-M-pyrifera_M_contig108866:25..4781692277481.0229456-CDS-M-pyrifera_M_contig108866:25..478Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108866 26..478 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108866.1861.1prot_M-pyrifera_M_contig108866.1861.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108866 26..478 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108866.1861.1

>prot_M-pyrifera_M_contig108866.1861.1 ID=prot_M-pyrifera_M_contig108866.1861.1|Name=mRNA_M-pyrifera_M_contig108866.1861.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=151bp
MWTGFRTAEATDGLPIQRHLDADTFTPNTEVLSPNAPEPIVGTTTRADRF
YPFAVPSTRPNSALNLLYVLLTSKSSPNNPCVFTVLGHQDGGEFLVHGDP
RKELGPLTMPVFRSFAYAQTGELEEFRTGTGIPYWYNRRTGETYWEPPLP
P
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mRNA from alignment at M-pyrifera_M_contig108866:2..478+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108866.1861.1 ID=mRNA_M-pyrifera_M_contig108866.1861.1|Name=mRNA_M-pyrifera_M_contig108866.1861.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=477bp|location=Sequence derived from alignment at M-pyrifera_M_contig108866:2..478+ (Macrocystis pyrifera P11B4 male)
CGTGAACATCAAACTGGAGAAGATATGTGGACTGGGTTTCGGACTGCAGA AGCAACTGATGGTTTACCAATTCAGCGACATTTAGATGCTGATACCTTTA CACCCAACACTGAAGTGCTCAGTCCCAATGCACCTGAACCAATTGTTGGG ACCACGACTCGTGCTGATCGCTTTTATCCATTTGCAGTGCCATCAACACG TCCAAATTCTGCTCTGAACCTTCTCTACGTTCTCCTCACATCAAAATCAT CTCCAAACAACCCATGTGTGTTTACAGTGCTTGGACATCAAGATGGCGGA GAATTCCTTGTACATGGTGATCCCCGCAAAGAACTTGGTCCACTTACAAT GCCAGTATTTCGCTCTTTCGCCTACGCGCAAACTGGAGAATTGGAAGAAT TTCGTACTGGAACAGGGATTCCATACTGGTACAATCGTCGGACGGGGGAA ACATACTGGGAACCACCACTCCCACCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108866:2..478+

>mRNA_M-pyrifera_M_contig108866.1861.1 ID=mRNA_M-pyrifera_M_contig108866.1861.1|Name=mRNA_M-pyrifera_M_contig108866.1861.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=906bp|location=Sequence derived from alignment at M-pyrifera_M_contig108866:2..478+ (Macrocystis pyrifera P11B4 male)
ATGTGGACTGGGTTTCGGACTGCAGAAGCAACTGATGGTTTACCAATTCA
GCGACATTTAGATGCTGATACCTTTACACCCAACACTGAAGTGCTCAGTC
CCAATGCACCTGAACCAATTGTTGGGACCACGACTCGTGCTGATCGCTTT
TATCCATTTGCAGTGCCATCAACACGTCCAAATTCTGCTCTGAACCTTCT
CTACGTTCTCCTCACATCAAAATCATCTCCAAACAACCCATGTGTGTTTA
CAGTGCTTGGACATCAAGATGGCGGAGAATTCCTTGTACATGGTGATCCC
CGCAAAGAACTTGGTCCACTTACAATGCCAGTATTTCGCTCTTTCGCCTA
CGCGCAAACTGGAGAATTGGAAGAATTTCGTACTGGAACAGGGATTCCAT
ACTGGTACAATCGTCGGACGGGGGAAACATACTGGGAACCACCACTCCCA
CCAATGTGGACTGGGTTTCGGACTGCAGAAGCAACTGATGGTTTACCAAT
TCAGCGACATTTAGATGCTGATACCTTTACACCCAACACTGAAGTGCTCA
GTCCCAATGCACCTGAACCAATTGTTGGGACCACGACTCGTGCTGATCGC
TTTTATCCATTTGCAGTGCCATCAACACGTCCAAATTCTGCTCTGAACCT
TCTCTACGTTCTCCTCACATCAAAATCATCTCCAAACAACCCATGTGTGT
TTACAGTGCTTGGACATCAAGATGGCGGAGAATTCCTTGTACATGGTGAT
CCCCGCAAAGAACTTGGTCCACTTACAATGCCAGTATTTCGCTCTTTCGC
CTACGCGCAAACTGGAGAATTGGAAGAATTTCGTACTGGAACAGGGATTC
CATACTGGTACAATCGTCGGACGGGGGAAACATACTGGGAACCACCACTC
CCACCA
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