mRNA_M-pyrifera_M_contig108837.1851.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108837.1851.1
Unique NamemRNA_M-pyrifera_M_contig108837.1851.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig108837.1851.1 vs. uniprot
Match: UPI0009E1F039 (nucleolar complex protein 4 homolog n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E1F039)

HSP 1 Score: 140 bits (354), Expect = 6.690e-37
Identity = 67/126 (53.17%), Postives = 90/126 (71.43%), Query Frame = 1
Query:   13 DVFNVNAHKRTFQAAWTSFLQLPLTASLYKRVLLHMPQGVFPSLPKPELTMDFLTSSYNVGGIVSLLALNSLFILITRHNLDYPRFYDKLYALLTPQIFFVTHSQQFFKQCKLFLGSSYLPEYMCA 390
            +V ++  H+  F A W +FL LPLT+ ++K+VLL++   V P L +P+L MDFLT SYN GG+ SLLALNSLF+LI +HNLDYP F+ KLYAL  P IF+V +  +FF    LFL S++LP Y+ A
Sbjct:  241 NVLDLKQHRNVFTAVWIAFLALPLTSEIHKKVLLNLHSDVLPHLTEPKLLMDFLTDSYNTGGVTSLLALNSLFVLIHKHNLDYPDFFKKLYALFGPNIFYVKYQARFFHLADLFLMSTHLPAYLVA 366          
BLAST of mRNA_M-pyrifera_M_contig108837.1851.1 vs. uniprot
Match: A0A2D4G0I8_MICCO (CBF domain-containing protein (Fragment) n=1 Tax=Micrurus corallinus TaxID=54390 RepID=A0A2D4G0I8_MICCO)

HSP 1 Score: 132 bits (333), Expect = 1.450e-36
Identity = 65/130 (50.00%), Postives = 88/130 (67.69%), Query Frame = 1
Query:    1 QGQFDVFNVNAHKRTFQAAWTSFLQLPLTASLYKRVLLHMPQGVFPSLPKPELTMDFLTSSYNVGGIVSLLALNSLFILITRHNLDYPRFYDKLYALLTPQIFFVTHSQQFFKQCKLFLGSSYLPEYMCA 390
            Q ++ V  +  H+R F+  W  FL+  L  SLYK+VL+ +   + P L +P L MDFLT +Y+VGG +SLLALN LF+LI +HNL+YP FY KLY+LL P IF V +  +FF+   LFL SS+LP Y+ A
Sbjct:   16 QEEWKVSKLKEHRRAFERMWLGFLKYKLPGSLYKKVLVILHDSILPHLNEPTLLMDFLTVAYDVGGAISLLALNGLFVLILQHNLEYPDFYTKLYSLLDPSIFHVKYRARFFRLLDLFLSSSHLPAYLVA 145          
BLAST of mRNA_M-pyrifera_M_contig108837.1851.1 vs. uniprot
Match: A0A7S4HGT6_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HGT6_9EUKA)

HSP 1 Score: 140 bits (353), Expect = 1.770e-36
Identity = 66/126 (52.38%), Postives = 88/126 (69.84%), Query Frame = 1
Query:   13 DVFNVNAHKRTFQAAWTSFLQLPLTASLYKRVLLHMPQGVFPSLPKPELTMDFLTSSYNVGGIVSLLALNSLFILITRHNLDYPRFYDKLYALLTPQIFFVTHSQQFFKQCKLFLGSSYLPEYMCA 390
            +VF V  H   FQ AW + L+LPL+  +YK+VLL MPQ + P  P PEL  DF   +Y +GG+ S+LAL  LF+L++++NL+Y  FY  LYALL P IF V +S +FF+ C+LF  SSYLPEY+CA
Sbjct:  300 NVFKVENHSEAFQNAWRALLRLPLSPLVYKQVLLDMPQHILPYFPNPELLGDFFKDAYKMGGMSSVLALQGLFVLVSKYNLEYKDFYRDLYALLEPSIFLVKYSGKFFELCRLFFASSYLPEYLCA 425          
BLAST of mRNA_M-pyrifera_M_contig108837.1851.1 vs. uniprot
Match: UPI000A2A72EF (nucleolar complex protein 4 homolog A n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A72EF)

HSP 1 Score: 137 bits (344), Expect = 2.010e-35
Identity = 69/126 (54.76%), Postives = 87/126 (69.05%), Query Frame = 1
Query:   13 DVFNVNAHKRTFQAAWTSFLQLPLTASLYKRVLLHMPQGVFPSLPKPELTMDFLTSSYNVGGIVSLLALNSLFILITRHNLDYPRFYDKLYALLTPQIFFVTHSQQFFKQCKLFLGSSYLPEYMCA 390
            D+F   AHK+ F  AW +FL   LT+ ++K+VLL++   V P +  P+L MDFLT SYN GG +SLLALN LFILI +HNLDYP FY KLYALL P IF V +  +FF    LFL S++LP Y+ A
Sbjct:  247 DLFLXKAHKKQFSKAWLAFLSQSLTSEMHKKVLLNLHTSVIPYMNDPKLLMDFLTDSYNSGGAISLLALNGLFILIHKHNLDYPDFYKKLYALLEPGIFHVKYQSRFFHLLDLFLTSTHLPAYLVA 372          
BLAST of mRNA_M-pyrifera_M_contig108837.1851.1 vs. uniprot
Match: UPI0003F0D5E6 (nucleolar complex protein 4 homolog n=1 Tax=Elephantulus edwardii TaxID=28737 RepID=UPI0003F0D5E6)

HSP 1 Score: 136 bits (342), Expect = 3.090e-35
Identity = 67/125 (53.60%), Postives = 88/125 (70.40%), Query Frame = 1
Query:   16 VFNVNAHKRTFQAAWTSFLQLPLTASLYKRVLLHMPQGVFPSLPKPELTMDFLTSSYNVGGIVSLLALNSLFILITRHNLDYPRFYDKLYALLTPQIFFVTHSQQFFKQCKLFLGSSYLPEYMCA 390
            V ++  H++ FQ  W SFL+  L  SLYK+VL+ M + + P L +P L MDFLTS+Y+VGG +SLLALN LFILI +HNL+YP FY KLY+LL P +F V +  +FF    LFL SS+LP Y+ A
Sbjct:  242 VAHLREHRKVFQQMWLSFLKHKLPVSLYKKVLVIMHEAILPHLAQPTLLMDFLTSAYDVGGAISLLALNGLFILIHKHNLEYPDFYQKLYSLLEPSVFHVKYRARFFHLADLFLSSSHLPAYLVA 366          
BLAST of mRNA_M-pyrifera_M_contig108837.1851.1 vs. uniprot
Match: UPI001CF2A419 (nucleolar complex protein 4 homolog B-like n=2 Tax=Acropora TaxID=6127 RepID=UPI001CF2A419)

HSP 1 Score: 136 bits (342), Expect = 3.760e-35
Identity = 63/122 (51.64%), Postives = 85/122 (69.67%), Query Frame = 1
Query:   25 VNAHKRTFQAAWTSFLQLPLTASLYKRVLLHMPQGVFPSLPKPELTMDFLTSSYNVGGIVSLLALNSLFILITRHNLDYPRFYDKLYALLTPQIFFVTHSQQFFKQCKLFLGSSYLPEYMCA 390
            +  HKR F ++W  FL++PLT+ ++K++LL++   V P +  P+L MDFLT SYN GG+ SLLALN LF LI +HNLDYP F+ KLYAL  P IF V +  +FF    LFL S++LP Y+ A
Sbjct:  253 IKHHKRLFSSSWIGFLRIPLTSEIHKKILLNLHTDVLPHMTDPKLLMDFLTDSYNTGGVTSLLALNGLFFLIHQHNLDYPEFFKKLYALFEPSIFHVKYQARFFHLADLFLSSTHLPAYLIA 374          
BLAST of mRNA_M-pyrifera_M_contig108837.1851.1 vs. uniprot
Match: A0A672HQD4_SALFA (CBF domain-containing protein n=7 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672HQD4_SALFA)

HSP 1 Score: 135 bits (339), Expect = 1.080e-34
Identity = 64/130 (49.23%), Postives = 88/130 (67.69%), Query Frame = 1
Query:    1 QGQFDVFNVNAHKRTFQAAWTSFLQLPLTASLYKRVLLHMPQGVFPSLPKPELTMDFLTSSYNVGGIVSLLALNSLFILITRHNLDYPRFYDKLYALLTPQIFFVTHSQQFFKQCKLFLGSSYLPEYMCA 390
            Q  +    +N HKRTF+  W  FL+  L +S+YKR+L+ +   + P + KP L +DFLT++Y+VGG +SLLALN LF+LI +HNLDYP FY KLY LL P +F V +  +FF    +FL SS+LP Y+ A
Sbjct:  263 QKDWKAAKLNEHKRTFERMWLGFLKYKLPSSMYKRILVILHDSILPHMSKPTLMIDFLTAAYDVGGAISLLALNGLFVLIHQHNLDYPDFYKKLYNLLEPSVFHVKYRARFFHLANIFLSSSHLPVYLVA 392          
BLAST of mRNA_M-pyrifera_M_contig108837.1851.1 vs. uniprot
Match: UPI00189E3514 (nucleolar complex protein 4 homolog n=1 Tax=Choloepus didactylus TaxID=27675 RepID=UPI00189E3514)

HSP 1 Score: 134 bits (338), Expect = 1.140e-34
Identity = 68/128 (53.12%), Postives = 89/128 (69.53%), Query Frame = 1
Query:    7 QFDVFNVNAHKRTFQAAWTSFLQLPLTASLYKRVLLHMPQGVFPSLPKPELTMDFLTSSYNVGGIVSLLALNSLFILITRHNLDYPRFYDKLYALLTPQIFFVTHSQQFFKQCKLFLGSSYLPEYMCA 390
            ++ V ++  H++ FQ  W SFL+  L  SLYK+VL+ M   + P L +P L +DFLTSSY+VGG +SLLALN LFILI +HNL+YP FY KLY+LL P IF V +  +FF    LFL SS+LP Y+ A
Sbjct:  239 KWKVTHLKEHRKAFQLMWLSFLKRQLPLSLYKKVLVIMHDAILPHLAQPALMIDFLTSSYDVGGAISLLALNGLFILIHQHNLEYPDFYRKLYSLLDPSIFHVKYRARFFHLADLFLSSSHLPAYLVA 366          
BLAST of mRNA_M-pyrifera_M_contig108837.1851.1 vs. uniprot
Match: A0A2Y9E1C9_TRIMA (nucleolar complex protein 4 homolog n=1 Tax=Trichechus manatus latirostris TaxID=127582 RepID=A0A2Y9E1C9_TRIMA)

HSP 1 Score: 134 bits (338), Expect = 1.150e-34
Identity = 66/128 (51.56%), Postives = 89/128 (69.53%), Query Frame = 1
Query:    7 QFDVFNVNAHKRTFQAAWTSFLQLPLTASLYKRVLLHMPQGVFPSLPKPELTMDFLTSSYNVGGIVSLLALNSLFILITRHNLDYPRFYDKLYALLTPQIFFVTHSQQFFKQCKLFLGSSYLPEYMCA 390
            ++ V ++  H++ FQ  W SFL+  L  SLYK+VL+ M   + P L +P L MDFLTS+Y++GG +SLLALN LFILI +HNL+YP FY KLY+LL P +F V +  +FF    LFL SS+LP Y+ A
Sbjct:  239 KWKVAHLKEHRKAFQLMWLSFLKHKLPVSLYKKVLVIMHDSILPHLAQPTLMMDFLTSAYDIGGAISLLALNGLFILIHKHNLEYPDFYRKLYSLLEPSVFHVKYRARFFHLADLFLSSSHLPAYLVA 366          
BLAST of mRNA_M-pyrifera_M_contig108837.1851.1 vs. uniprot
Match: A0A670Z7A7_PSETE (CBF domain-containing protein n=1 Tax=Pseudonaja textilis TaxID=8673 RepID=A0A670Z7A7_PSETE)

HSP 1 Score: 132 bits (333), Expect = 1.410e-34
Identity = 65/130 (50.00%), Postives = 88/130 (67.69%), Query Frame = 1
Query:    1 QGQFDVFNVNAHKRTFQAAWTSFLQLPLTASLYKRVLLHMPQGVFPSLPKPELTMDFLTSSYNVGGIVSLLALNSLFILITRHNLDYPRFYDKLYALLTPQIFFVTHSQQFFKQCKLFLGSSYLPEYMCA 390
            Q ++ V  +  H+R F+  W  FL+  L  SLYK+VL+ +   + P L +P L MDFLT +Y+VGG +SLLALN LF+LI +HNL+YP FY KLY+LL P IF V +  +FF+   LFL SS+LP Y+ A
Sbjct:  174 QEEWKVSKLKEHRRAFERMWLGFLKYKLPGSLYKKVLVILHDSILPHLNEPTLLMDFLTVAYDVGGAISLLALNGLFVLILQHNLEYPDFYTKLYSLLDPSIFHVKYRARFFRLLDLFLSSSHLPAYLVA 303          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108837.1851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0009E1F0396.690e-3753.17nucleolar complex protein 4 homolog n=1 Tax=Orbice... [more]
A0A2D4G0I8_MICCO1.450e-3650.00CBF domain-containing protein (Fragment) n=1 Tax=M... [more]
A0A7S4HGT6_9EUKA1.770e-3652.38Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
UPI000A2A72EF2.010e-3554.76nucleolar complex protein 4 homolog A n=1 Tax=Exai... [more]
UPI0003F0D5E63.090e-3553.60nucleolar complex protein 4 homolog n=1 Tax=Elepha... [more]
UPI001CF2A4193.760e-3551.64nucleolar complex protein 4 homolog B-like n=2 Tax... [more]
A0A672HQD4_SALFA1.080e-3449.23CBF domain-containing protein n=7 Tax=Salarias fas... [more]
UPI00189E35141.140e-3453.13nucleolar complex protein 4 homolog n=1 Tax=Choloe... [more]
A0A2Y9E1C9_TRIMA1.150e-3451.56nucleolar complex protein 4 homolog n=1 Tax=Triche... [more]
A0A670Z7A7_PSETE1.410e-3450.00CBF domain-containing protein n=1 Tax=Pseudonaja t... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108837contigM-pyrifera_M_contig108837:158..609 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score141.7
Seed ortholog evalue2.4e-31
Seed eggNOG ortholog192875.XP_004346827.1
Preferred nameNOC4L
KEGG koko:K14771
Hectar predicted targeting categoryother localisation
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0000981,GO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006355,GO:0006357,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0022613,GO:0030490,GO:0030684,GO:0030686,GO:0030688,GO:0030689,GO:0030692,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140110,GO:1901360,GO:1903506,GO:1990904,GO:2000112,GO:2001141
EggNOG free text desc.Nucleolar complex
EggNOG OGs38EIE@33154,KOG2154@1,KOG2154@2759
COG Functional cat.J
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons2
Model size390
Cds size390
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815598.064523-CDS-M-pyrifera_M_contig108837:157..4111622815598.064523-CDS-M-pyrifera_M_contig108837:157..411Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108837 158..411 +
1692277480.8401194-CDS-M-pyrifera_M_contig108837:157..4111692277480.8401194-CDS-M-pyrifera_M_contig108837:157..411Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108837 158..411 +
1622815598.0781138-CDS-M-pyrifera_M_contig108837:473..6091622815598.0781138-CDS-M-pyrifera_M_contig108837:473..609Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108837 474..609 +
1692277480.8523102-CDS-M-pyrifera_M_contig108837:473..6091692277480.8523102-CDS-M-pyrifera_M_contig108837:473..609Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108837 474..609 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108837.1851.1prot_M-pyrifera_M_contig108837.1851.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108837 158..609 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108837.1851.1

>prot_M-pyrifera_M_contig108837.1851.1 ID=prot_M-pyrifera_M_contig108837.1851.1|Name=mRNA_M-pyrifera_M_contig108837.1851.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=130bp
QGQFDVFNVNAHKRTFQAAWTSFLQLPLTASLYKRVLLHMPQGVFPSLPK
PELTMDFLTSSYNVGGIVSLLALNSLFILITRHNLDYPRFYDKLYALLTP
QIFFVTHSQQFFKQCKLFLGSSYLPEYMCA
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mRNA from alignment at M-pyrifera_M_contig108837:158..609+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108837.1851.1 ID=mRNA_M-pyrifera_M_contig108837.1851.1|Name=mRNA_M-pyrifera_M_contig108837.1851.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=452bp|location=Sequence derived from alignment at M-pyrifera_M_contig108837:158..609+ (Macrocystis pyrifera P11B4 male)
CAGGGGCAGTTCGACGTCTTCAACGTCAACGCACACAAGAGGACCTTCCA GGCCGCGTGGACCTCCTTCCTCCAGCTGCCGCTCACGGCGAGCCTGTACA AGAGAGTGCTCCTCCACATGCCTCAGGGAGTCTTCCCCTCGCTGCCCAAG CCCGAGCTCACAATGGACTTCCTCACGTCTTCCTACAACGTCGGTGGCAT CGTCAGCCTCCTGGCGCTCAACAGTCTCTTCATCCTCATCACGCGCCACA ACCTGTATGCTCTCCCACCTCTGGCGGTGATGTGTGAGTACCATGCTGAC GACTGCTTGCTCCTAGGGACTACCCTCGATTCTACGACAAGCTCTACGCA CTCCTGACGCCGCAGATCTTCTTTGTGACACACAGCCAGCAGTTCTTCAA GCAGTGCAAGCTCTTCCTCGGCTCCAGCTACCTGCCCGAGTACATGTGTG CA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108837:158..609+

>mRNA_M-pyrifera_M_contig108837.1851.1 ID=mRNA_M-pyrifera_M_contig108837.1851.1|Name=mRNA_M-pyrifera_M_contig108837.1851.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=780bp|location=Sequence derived from alignment at M-pyrifera_M_contig108837:158..609+ (Macrocystis pyrifera P11B4 male)
CAGGGGCAGTTCGACGTCTTCAACGTCAACGCACACAAGAGGACCTTCCA
GGCCGCGTGGACCTCCTTCCTCCAGCTGCCGCTCACGGCGAGCCTGTACA
AGAGAGTGCTCCTCCACATGCCTCAGGGAGTCTTCCCCTCGCTGCCCAAG
CCCGAGCTCACAATGGACTTCCTCACGTCTTCCTACAACGTCGGTGGCAT
CGTCAGCCTCCTGGCGCTCAACAGTCTCTTCATCCTCATCACGCGCCACA
ACCTCAGGGGCAGTTCGACGTCTTCAACGTCAACGCACACAAGAGGACCT
TCCAGGCCGCGTGGACCTCCTTCCTCCAGCTGCCGCTCACGGCGAGCCTG
TACAAGAGAGTGCTCCTCCACATGCCTCAGGGAGTCTTCCCCTCGCTGCC
CAAGCCCGAGCTCACAATGGACTTCCTCACGTCTTCCTACAACGTCGGTG
GCATCGTCAGCCTCCTGGCGCTCAACAGTCTCTTCATCCTCATCACGCGC
CACAACCTGGACTACCCTCGATTCTACGACAAGCTCTACGCACTCCTGAC
GCCGCAGATCTTCTTTGTGACACACAGCCAGCAGTTCTTCAAGCAGTGCA
AGCTCTTCCTCGGCTCCAGCTACCTGCCCGAGTACATGTGTGCAGGACTA
CCCTCGATTCTACGACAAGCTCTACGCACTCCTGACGCCGCAGATCTTCT
TTGTGACACACAGCCAGCAGTTCTTCAAGCAGTGCAAGCTCTTCCTCGGC
TCCAGCTACCTGCCCGAGTACATGTGTGCA
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