mRNA_M-pyrifera_M_contig108778.1845.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108778.1845.1
Unique NamemRNA_M-pyrifera_M_contig108778.1845.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig108778.1845.1 vs. uniprot
Match: A0A6H5JVQ8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVQ8_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.700e-17
Identity = 42/77 (54.55%), Postives = 52/77 (67.53%), Query Frame = 1 
Query:   16 PEDVEPPPQSVADVERSQYKAAWHDAMKIELDGHKTTGAYEAAT-PPKGRKPVGAKWVFTYKTDKDGLIVKTKARLV 243
            P DVE PP +VA V +S Y+  W  AM+ E DGH  TG +      P+GR+PV +KW FT+KT+KDG IVK KARLV
Sbjct:  521 PSDVESPPMTVAGVNKSVYREGWEQAMREEFDGHLGTGTFSFVDGTPEGRRPVSSKWRFTWKTNKDGKIVKFKARLV 597
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BLAST of mRNA_M-pyrifera_M_contig108778.1845.1 vs. uniprot
Match: A0A6H5K1A8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1A8_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 2.050e-16
Identity = 40/77 (51.95%), Postives = 52/77 (67.53%), Query Frame = 1 
Query:   16 PEDVEPPPQSVADVERSQYKAAWHDAMKIELDGHKTTGAY-EAATPPKGRKPVGAKWVFTYKTDKDGLIVKTKARLV 243
            P DVE  P +  DV  S+YK  W  AMK E+DGH  TG + +   PP GRK +G+KWVF++KT++ GLIV  KAR+V
Sbjct:   43 PSDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHGKTGTFTKVKEPPGGRKAIGSKWVFSWKTNEKGLIVDFKARMV 119
[Close]
BLAST of mRNA_M-pyrifera_M_contig108778.1845.1 vs. uniprot
Match: A0A6H5K282_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K282_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.120e-15
Identity = 39/77 (50.65%), Postives = 51/77 (66.23%), Query Frame = 1 
Query:   16 PEDVEPPPQSVADVERSQYKAAWHDAMKIELDGHKTTGAYEAATP-PKGRKPVGAKWVFTYKTDKDGLIVKTKARLV 243
            P DVE  P +  DV  S+YK  W  AMK E+DGH  TG +      P+GRK +G+KWVF++KT++ GLIV  KAR+V
Sbjct:  115 PSDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMV 191
[Close]
BLAST of mRNA_M-pyrifera_M_contig108778.1845.1 vs. uniprot
Match: A0A6H5JIZ8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIZ8_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.670e-15
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = 1 
Query:   16 PEDVEPPPQSVADVERSQYKAAWHDAMKIELDGHKTTGAYEAATP-PKGRKPVGAKWVFTYKTDKDGLIVKTKARLV 243
            P +VE  P +  DV  S+YK  W  AMK E+DGH  TG +      P+GRK +G+KWVF++KT++ GLIV  KAR+V
Sbjct:   45 PSNVEVVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMV 121
[Close]
BLAST of mRNA_M-pyrifera_M_contig108778.1845.1 vs. uniprot
Match: A0A6H5K236_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K236_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.940e-15
Identity = 39/77 (50.65%), Postives = 50/77 (64.94%), Query Frame = 1 
Query:   16 PEDVEPPPQSVADVERSQYKAAWHDAMKIELDGHKTTGAYEAATP-PKGRKPVGAKWVFTYKTDKDGLIVKTKARLV 243
            P DVE  P +  DV  S+YK  W  AMK E+DGH  TG +      P+GRK +G+KWVF++KT + GLIV  KAR+V
Sbjct:    9 PSDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTKEKGLIVDFKARMV 85
[Close]
BLAST of mRNA_M-pyrifera_M_contig108778.1845.1 vs. uniprot
Match: A0A6H5L7A5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A5_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 2.380e-15
Identity = 39/77 (50.65%), Postives = 50/77 (64.94%), Query Frame = 1 
Query:   16 PEDVEPPPQSVADVERSQYKAAWHDAMKIELDGHKTTGAYEAATP-PKGRKPVGAKWVFTYKTDKDGLIVKTKARLV 243
            P DVE  P +  D+  S+YK  W  AMK E+DGH  TG +      P+GRK +G+KWVF  KT+K+GLIV  KAR+V
Sbjct:  102 PSDVEAVPMTYKDMMCSKYKFLWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFALKTNKEGLIVDFKARMV 178
[Close]
BLAST of mRNA_M-pyrifera_M_contig108778.1845.1 vs. uniprot
Match: A0A6H5KPX2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX2_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 2.650e-15
Identity = 39/77 (50.65%), Postives = 51/77 (66.23%), Query Frame = 1 
Query:   16 PEDVEPPPQSVADVERSQYKAAWHDAMKIELDGHKTTGAYEAATP-PKGRKPVGAKWVFTYKTDKDGLIVKTKARLV 243
            P DVE  P +  DV  S+YK  W  AMK E+DGH  TG +      P+GRK +G+KWVF++KT++ GLIV  KAR+V
Sbjct:  101 PSDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMV 177
[Close]
BLAST of mRNA_M-pyrifera_M_contig108778.1845.1 vs. uniprot
Match: A0A6H5JXX7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXX7_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 6.270e-15
Identity = 39/77 (50.65%), Postives = 51/77 (66.23%), Query Frame = 1 
Query:   16 PEDVEPPPQSVADVERSQYKAAWHDAMKIELDGHKTTGAYEAATP-PKGRKPVGAKWVFTYKTDKDGLIVKTKARLV 243
            P DVE  P +  DV  S+YK  W  AMK E+DGH  TG +      P+GRK +G+KWVF++KT++ GLIV  KAR+V
Sbjct:  301 PSDVEAVPMTYRDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMV 377
[Close]
BLAST of mRNA_M-pyrifera_M_contig108778.1845.1 vs. uniprot
Match: A0A6H5K3C5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C5_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 6.340e-15
Identity = 39/77 (50.65%), Postives = 51/77 (66.23%), Query Frame = 1 
Query:   16 PEDVEPPPQSVADVERSQYKAAWHDAMKIELDGHKTTGAYEAATP-PKGRKPVGAKWVFTYKTDKDGLIVKTKARLV 243
            P DVE  P +  DV  S+YK  W  AMK E+DGH  TG +      P+GRK +G+KWVF++KT++ GLIV  KAR+V
Sbjct:  451 PSDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMV 527
[Close]
BLAST of mRNA_M-pyrifera_M_contig108778.1845.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 6.410e-15
Identity = 39/77 (50.65%), Postives = 51/77 (66.23%), Query Frame = 1 
Query:   16 PEDVEPPPQSVADVERSQYKAAWHDAMKIELDGHKTTGAYEAATP-PKGRKPVGAKWVFTYKTDKDGLIVKTKARLV 243
            P DVE  P +  DV  S+YK  W  AMK E+DGH  TG +      P+GRK +G+KWVF++KT++ GLIV  KAR+V
Sbjct:  352 PSDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMV 428
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108778.1845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JVQ8_9PHAE1.700e-1754.55Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1A8_9PHAE2.050e-1651.95Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K282_9PHAE1.120e-1550.65Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JIZ8_9PHAE1.670e-1549.35Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K236_9PHAE1.940e-1550.65Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L7A5_9PHAE2.380e-1550.65Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KPX2_9PHAE2.650e-1550.65Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JXX7_9PHAE6.270e-1550.65Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K3C5_9PHAE6.340e-1550.65Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1I0_9PHAE6.410e-1550.65Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108778contigM-pyrifera_M_contig108778:15..257 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score60.1
Seed ortholog evalue5.6e-07
Seed eggNOG ortholog400682.PAC_15712908
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BI7U@33208,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons1
Model size243
Cds size243
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815597.754325-CDS-M-pyrifera_M_contig108778:14..2571622815597.754325-CDS-M-pyrifera_M_contig108778:14..257Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108778 15..257 -
1692277480.7191625-CDS-M-pyrifera_M_contig108778:14..2571692277480.7191625-CDS-M-pyrifera_M_contig108778:14..257Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108778 15..257 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108778.1845.1prot_M-pyrifera_M_contig108778.1845.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108778 15..257 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108778.1845.1

>prot_M-pyrifera_M_contig108778.1845.1 ID=prot_M-pyrifera_M_contig108778.1845.1|Name=mRNA_M-pyrifera_M_contig108778.1845.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=81bp
MPSGFPEDVEPPPQSVADVERSQYKAAWHDAMKIELDGHKTTGAYEAATP
PKGRKPVGAKWVFTYKTDKDGLIVKTKARLV
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mRNA from alignment at M-pyrifera_M_contig108778:15..257-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108778.1845.1 ID=mRNA_M-pyrifera_M_contig108778.1845.1|Name=mRNA_M-pyrifera_M_contig108778.1845.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=243bp|location=Sequence derived from alignment at M-pyrifera_M_contig108778:15..257- (Macrocystis pyrifera P11B4 male)
ATGCCGAGTGGTTTCCCGGAAGACGTAGAACCGCCCCCACAGTCGGTAGC
AGATGTAGAGCGTTCTCAATACAAAGCGGCGTGGCACGACGCCATGAAAA
TTGAGTTGGACGGTCACAAAACGACCGGTGCGTACGAAGCCGCGACACCG
CCAAAAGGGCGGAAACCTGTAGGTGCGAAGTGGGTGTTTACCTACAAGAC
AGATAAGGATGGCTTGATAGTAAAGACAAAGGCCAGACTTGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108778:15..257-

>mRNA_M-pyrifera_M_contig108778.1845.1 ID=mRNA_M-pyrifera_M_contig108778.1845.1|Name=mRNA_M-pyrifera_M_contig108778.1845.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig108778:15..257- (Macrocystis pyrifera P11B4 male)
ATGCCGAGTGGTTTCCCGGAAGACGTAGAACCGCCCCCACAGTCGGTAGC
AGATGTAGAGCGTTCTCAATACAAAGCGGCGTGGCACGACGCCATGAAAA
TTGAGTTGGACGGTCACAAAACGACCGGTGCGTACGAAGCCGCGACACCG
CCAAAAGGGCGGAAACCTGTAGGTGCGAAGTGGGTGTTTACCTACAAGAC
AGATAAGGATGGCTTGATAGTAAAGACAAAGGCCAGACTTGTGATGCCGA
GTGGTTTCCCGGAAGACGTAGAACCGCCCCCACAGTCGGTAGCAGATGTA
GAGCGTTCTCAATACAAAGCGGCGTGGCACGACGCCATGAAAATTGAGTT
GGACGGTCACAAAACGACCGGTGCGTACGAAGCCGCGACACCGCCAAAAG
GGCGGAAACCTGTAGGTGCGAAGTGGGTGTTTACCTACAAGACAGATAAG
GATGGCTTGATAGTAAAGACAAAGGCCAGACTTGTG
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