mRNA_M-pyrifera_M_contig10876.1843.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10876.1843.1
Unique NamemRNA_M-pyrifera_M_contig10876.1843.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig10876.1843.1 vs. uniprot
Match: D7FT50_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT50_ECTSI)

HSP 1 Score: 205 bits (521), Expect = 3.980e-61
Identity = 113/161 (70.19%), Postives = 121/161 (75.16%), Query Frame = 1 
Query:    1 KTDDSFQFARAVKRLRQAIEALGDATGTIDAVDCVATGVDGSTEEAVGGGGAGEGVLSLPLERKRAVILIMKEAFKSYHLAWARSSIEPAFKARGCCMFAAADRRRLFPEGEMRDALDGFTDTITKRQRNPGGAMAPPSRSVRVHNSTAHPMLNKRADVIR 483
            KTDDSF FARA+KRLR+AIEALG  TG   A D    G           G AG   +SL LERK A+IL+MKEAFKSYHLAWARSSIEPAFKA       AADRRRLFPEG++RD LD FTD ITKRQRNPGG MAPPSRSVR HNSTAHPMLNKR+DVIR
Sbjct:  336 KTDDSFTFARAIKRLREAIEALGGVTGGGKATD----GTXXXXXXXXXTGSAGGNRVSLSLERKTALILVMKEAFKSYHLAWARSSIEPAFKA-------AADRRRLFPEGDLRDTLDDFTDAITKRQRNPGGLMAPPSRSVRAHNSTAHPMLNKRSDVIR 485
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10876.1843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT50_ECTSI3.980e-6170.19Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10876contigM-pyrifera_M_contig10876:7307..9747 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_003580.1
Exons3
Model size486
Cds size486
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10876.1843.1prot_M-pyrifera_M_contig10876.1843.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10876 7307..9747 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815597.6614654-CDS-M-pyrifera_M_contig10876:7306..73691622815597.6614654-CDS-M-pyrifera_M_contig10876:7306..7369Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10876 7307..7369 -
1692277480.669738-CDS-M-pyrifera_M_contig10876:7306..73691692277480.669738-CDS-M-pyrifera_M_contig10876:7306..7369Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10876 7307..7369 -
1622815597.6727562-CDS-M-pyrifera_M_contig10876:8428..85541622815597.6727562-CDS-M-pyrifera_M_contig10876:8428..8554Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10876 8429..8554 -
1692277480.6852376-CDS-M-pyrifera_M_contig10876:8428..85541692277480.6852376-CDS-M-pyrifera_M_contig10876:8428..8554Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10876 8429..8554 -
1622815597.688668-CDS-M-pyrifera_M_contig10876:9450..97471622815597.688668-CDS-M-pyrifera_M_contig10876:9450..9747Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10876 9451..9747 -
1692277480.693399-CDS-M-pyrifera_M_contig10876:9450..97471692277480.693399-CDS-M-pyrifera_M_contig10876:9450..9747Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10876 9451..9747 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10876.1843.1

>prot_M-pyrifera_M_contig10876.1843.1 ID=prot_M-pyrifera_M_contig10876.1843.1|Name=mRNA_M-pyrifera_M_contig10876.1843.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=162bp
KTDDSFQFARAVKRLRQAIEALGDATGTIDAVDCVATGVDGSTEEAVGGG
GAGEGVLSLPLERKRAVILIMKEAFKSYHLAWARSSIEPAFKARGCCMFA
AADRRRLFPEGEMRDALDGFTDTITKRQRNPGGAMAPPSRSVRVHNSTAH
PMLNKRADVIR*
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mRNA from alignment at M-pyrifera_M_contig10876:7307..9747-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10876.1843.1 ID=mRNA_M-pyrifera_M_contig10876.1843.1|Name=mRNA_M-pyrifera_M_contig10876.1843.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2441bp|location=Sequence derived from alignment at M-pyrifera_M_contig10876:7307..9747- (Macrocystis pyrifera P11B4 male)
AAGACGGACGACTCGTTCCAGTTCGCGCGCGCCGTCAAGCGGTTGCGCCA
GGCCATCGAAGCCCTCGGCGATGCTACCGGGACAATCGACGCAGTCGACT
GCGTGGCGACGGGGGTGGATGGTAGCACCGAGGAGGCGGTGGGGGGGGGA
GGGGCGGGGGAGGGCGTGCTCTCGCTCCCGCTAGAGCGAAAGAGGGCGGT
GATCCTGATCATGAAGGAGGCGTTCAAGAGCTACCACCTGGCGTGGGCGA
GGTCTTCTATCGAGCCCGCTTTCAAGGCGAGGGGGTGTTGTATGTTTGTT
TGGATGTCGGGGGTGTTTTGTTTTGTTCTTGAGGGTGTTTGCTTTTTTTG
TGGGGGGCTTTATTCGTCGGTGGCGTCCGTTTTCCTGAAGGTGCTTGGTT
TTGTTGGGGTCCTTGCTTGCTGTGGGAGATGTTTGCATTGTTCTCGGCGG
TGCTCGTGTGCTGTGTGCTCGGTGCTGCCCCCAGCGTCCACTTCGCTGTT
TTTTTGTTTTTTTTTCTCTAGCCGTTGCTGCAGGGAAGGGAATGATTATA
GAGCCTTTGCGCGCCGATTCCCCCTCTTTCGTGCTGTGCTAAAAAAAGTA
CGAAGATTGGTTGGTGCTTATGCAAGGCGACAGGCGCAGGTTCTCGGCGC
GTGATTGTGAAAATATCGCAACTGTTGTCATCTTCGGCCGTGGCTACTCG
ACCTACGTCTGTTTTTTGCGTCGATGGACCTATTTTCTTGAGCGTCAAAC
GCCGACGGGCCGCTATTCTCAACGCGTTGAGAAGGTTGGCCGAATCAAAG
GCGCCGAGTACTGCTATCATGTTGCCTCTCCCTCCCGGCCCCCGCTCCTT
CCCCCCCACCGCCCTACCTTCGTACGCACCGCTCTGTTCATTGCTTCGCT
GTCACCGTTTTTCCCCTACCGACCTTTCGGCTTTCCTGCACTTTTATCTT
TCGATAGTCCGACTCGCCGGTCCTTTATTCGATGTGTCGATCTTTCGATT
TTTCGATATTCCGACGCGCCGATGTTTCAACATTTTGATAATCGGATCGT
CCGATGTTTCGGTATATTTCGATGCACCTATCTTTCATCAGCCTTTCGAT
GTTTTGATCTTCCCACATTTTCCTAATTTTTTTAATCTTCCGAATCTTGC
GATCGCTCGTATCGTACGTGGCGTGTGTATGGCACGATCAAAGGCGGCGG
CGGACCGGAGGAGGCTGTTTCCGGAGGGCGAGATGCGCGACGCGCTGGAC
GGTTTCACGGACACCATCACCAAGAGGCAGAGGAACCCCGGTGGCGCGAT
GGCACCGCCTTCGAGATCGGTAAGTGTTTTGGCGTGGTGGCGTGGTGGCG
GGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGTGTCAAC
CTTAACCCTCGTATGATACATACCTGGTATGCCATTATACGCGCTACGAT
AGGGATTTGACTTTGCTATAGGATAGCCCCAACCATTTCTGACTGAAAGC
GGGGAAAGCTCCTCAACTCAAGGAGGGAACTACCCAACCATGGTGCCAAA
GTTGCGCACCCGATCTGTATTGGGTCGTTGAGCATCTTGGCCTCATGGCA
TCCTGTATCGGGGGTCCGTAGTAAATAGGACCTACGGTACACAGTCAAAT
ATATATATATATATATTTACCTATTTTTACAAACAATATTTGGTCCTATT
TACTATGGTCCCCCGTAATAGAAAGCAAAATCCGTGCTTTCGGTTGGCTG
TTCATTTCGACCATTTTGGGTCCGTTCGGGACTGTGTAAATGACATCCGT
GATTGGCCGGGCATCGTCGTGGGTGTACATCGGCCCCGTCCTATTGTCGA
GGTTGTTTGGGCTTGGTGAAGATCATAAGCGTTGTGCTGGACACCCTGCA
GTATTGTTTTTCGTGTCACCGCGTTCCGGCAGTAAGCTCTTCGATCTCGA
CCGGCCTTTCAGGCGTTTGCCCCCCGGCGCCTTTTTTGGTCCGTGCGGCG
AGTGATCACCGACCTGGGCAAAACACCTTATGCAAGCATCTTGCGTTTCA
TGGTTGTTTTTGCGTCATACCTTCCTTCCTTCCTTCCTTCCTCTCTTATT
TAGTCCCTTTCTTCCTTGCTTCCTTCCTGCCCTCCCTCCCTTCCTCCCCT
CCTTCCTGCCCTCCCTCCCGGCCTTCCTTCCTCCCTTCCTTTCTCCCTTC
CTCCCGTACTGCCTTCATTCCTACCTTCCTTCCTTCCTTTCTCCCTCTTC
CCTCCCTCCCACCCTCCCTCCCTCCGTCCGTTTCTCTCTTCCTTTCTTCT
TGCCCTTCTGCCGTCCGTTCTACCCCCCTCCCTTCCCCCCTTCATTTCTT
CCCGACCCACATTTTTGTGGATTGACAGGTCCGCGTACACAACTCAACGG
CGCACCCAATGCTTAACAAGCGGGCGGATGTCATTCGGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10876:7307..9747-

>mRNA_M-pyrifera_M_contig10876.1843.1 ID=mRNA_M-pyrifera_M_contig10876.1843.1|Name=mRNA_M-pyrifera_M_contig10876.1843.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=972bp|location=Sequence derived from alignment at M-pyrifera_M_contig10876:7307..9747- (Macrocystis pyrifera P11B4 male)
AAGACGGACGACTCGTTCCAGTTCGCGCGCGCCGTCAAGCGGTTGCGCCA
GGCCATCGAAGCCCTCGGCGATGCTACCGGGACAATCGACGCAGTCGACT
GCGTGGCGACGGGGGTGGATGGTAGCACCGAGGAGGCGGTGGGGGGGGGA
GGGGCGGGGGAGGGCGTGCTCTCGCTCCCGCTAGAGCGAAAGAGGGCGGT
GATCCTGATCATGAAGGAGGCGTTCAAGAGCTACCACCTGGCGTGGGCGA
GGTCTTCTATCGAGCCCGCTTTCAAGGCGAGGGGGTGTTGTATGTTTAAG
ACGGACGACTCGTTCCAGTTCGCGCGCGCCGTCAAGCGGTTGCGCCAGGC
CATCGAAGCCCTCGGCGATGCTACCGGGACAATCGACGCAGTCGACTGCG
TGGCGACGGGGGTGGATGGTAGCACCGAGGAGGCGGTGGGGGGGGGAGGG
GCGGGGGAGGGCGTGCTCTCGCTCCCGCTAGAGCGAAAGAGGGCGGTGAT
CCTGATCATGAAGGAGGCGTTCAAGAGCTACCACCTGGCGTGGGCGAGGT
CTTCTATCGAGCCCGCTTTCAAGGCGAGGGGGTGTTGTATGTTTGCGGCG
GCGGACCGGAGGAGGCTGTTTCCGGAGGGCGAGATGCGCGACGCGCTGGA
CGGTTTCACGGACACCATCACCAAGAGGCAGAGGAACCCCGGTGGCGCGA
TGGCACCGCCTTCGAGATCGGCGGCGGCGGACCGGAGGAGGCTGTTTCCG
GAGGGCGAGATGCGCGACGCGCTGGACGGTTTCACGGACACCATCACCAA
GAGGCAGAGGAACCCCGGTGGCGCGATGGCACCGCCTTCGAGATCGGTCC
GCGTACACAACTCAACGGCGCACCCAATGCTTAACAAGCGGGCGGATGTC
ATTCGGTAGGTCCGCGTACACAACTCAACGGCGCACCCAATGCTTAACAA
GCGGGCGGATGTCATTCGGTAG
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