mRNA_M-pyrifera_M_contig108736.1837.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108736.1837.1
Unique NamemRNA_M-pyrifera_M_contig108736.1837.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig108736.1837.1 vs. uniprot
Match: UPI00118D08CE (hypothetical protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=UPI00118D08CE)

HSP 1 Score: 401 bits (1030), Expect = 1.950e-139
Identity = 196/203 (96.55%), Postives = 201/203 (99.01%), Query Frame = 1 
Query:    1 TALLLLLIYPCEMETVLADEQKTETHPLSQKELTAIWEAIKSTKAADIKQTQFPDVDFKIEPGSDNYWGLFTALGFDELKKISQSSNPRKGFQYFVDQFGTTDALTDMRWLQAARALHLNPERSYHPLREPENKYQQRQRRDQLIFAELMVRKFLKSPEALKRYYQAVIWFDRMFHPLNFPVYQGVISRQLKKESPEDEYWWH 609
            TALLLLLIYPCEMETVLADEQKTETHPLSQKELTAIWEAIKSTKAADIKQTQFPDVDFKIEPGSDNYWGLFTALGFDELKKISQSSNPRKGFQYFVDQFGTTDALTDMRWLQAARALHLNPERSYHPLREPEN+ Q+RQRRDQLIFAELMVR FLKSPE+LKRYYQAVIWFDRMF+PLNFPVYQGVISRQLKKESPED+YWWH
Sbjct:   19 TALLLLLIYPCEMETVLADEQKTETHPLSQKELTAIWEAIKSTKAADIKQTQFPDVDFKIEPGSDNYWGLFTALGFDELKKISQSSNPRKGFQYFVDQFGTTDALTDMRWLQAARALHLNPERSYHPLREPENENQKRQRRDQLIFAELMVRNFLKSPESLKRYYQAVIWFDRMFNPLNFPVYQGVISRQLKKESPEDDYWWH 221
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BLAST of mRNA_M-pyrifera_M_contig108736.1837.1 vs. uniprot
Match: A0A517VFK4_9PLAN (Uncharacterized protein n=2 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VFK4_9PLAN)

HSP 1 Score: 191 bits (486), Expect = 5.990e-57
Identity = 96/176 (54.55%), Postives = 124/176 (70.45%), Query Frame = 1 
Query:   82 LSQKELTAIWEAIKSTKAADIKQTQFPDVDFKIEPGSDNYWGLFTALGFDELKKISQSSNPRKGFQYFVDQFGTTDALTDMRWLQAARALHLNPERSYHPLREPENKYQQRQRRDQLIFAELMVRKFLKSPEALKRYYQAVIWFDRMFHPLNFPVYQGVISRQLKKESPEDEYWWH 609
            LS +E+  +W         +IK   FP +  ++  GS+ YW   T +GFDELKKI  SSNPR+G +Y+VDQFG  DA +DMRWL A R  +LNP++S HP RE +     ++R+ QLIFAELMVRKFLKSP AL+RYYQAVIWFD +F P+N+ VY G I RQ +KE+P+D+YWWH
Sbjct:   59 LSTEEIHLVWH--------NIKTVGFPGIR-RLPAGSEGYWLEVTKVGFDELKKIIDSSNPRQGLKYYVDQFGKDDAHSDMRWLLAVRTWNLNPDKSLHPHREEKTL---QERKVQLIFAELMVRKFLKSPAALRRYYQAVIWFDNLFKPINYSVYHGTIYRQFQKENPDDDYWWH 222
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BLAST of mRNA_M-pyrifera_M_contig108736.1837.1 vs. uniprot
Match: A0A518IDZ6_9PLAN (Uncharacterized protein n=2 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518IDZ6_9PLAN)

HSP 1 Score: 156 bits (395), Expect = 1.980e-43
Identity = 82/186 (44.09%), Postives = 114/186 (61.29%), Query Frame = 1 
Query:   52 ADEQKTETHPLSQKELTAIWEAIKSTKAADIKQTQFPDVDFKIEPGSDNYWGLFTALGFDELKKISQSSNPRKGFQYFVDQFGTTDALTDMRWLQAARALHLNPERSYHPLREPENKYQQRQRRDQLIFAELMVRKFLKSPEALKRYYQAVIWFDRMFHPLNFPVYQGVISRQLKKESPEDEYWWH 609
            A+ +      LS+ E+  +W+ IK+T+  D KQ         +  GS+ YW    ++GFDEL+++ +SSNPR+G +YFVDQFG   A TDMRWL AAR+  L   R   P        Q   RR Q+IFAEL VR+FLK P+ L RYYQ+V+WF+ MF  L FP+  G + R +K++S +D YWW+
Sbjct:   39 AENKSDPAKRLSKDEIHQVWDTIKTTEFPDTKQ---------VPAGSEGYWIEVMSVGFDELRRVVESSNPREGLKYFVDQFGKEGAQTDMRWLVAARSQLLPANRRVKPANADG---QPILRRAQIIFAELQVRQFLKEPKLLARYYQSVVWFENMFDDLFFPILLGNLYRNMKEDSSDDNYWWY 212
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BLAST of mRNA_M-pyrifera_M_contig108736.1837.1 vs. uniprot
Match: A0A2E7KAW0_9PLAN (Uncharacterized protein n=1 Tax=Gimesia sp. TaxID=2024833 RepID=A0A2E7KAW0_9PLAN)

HSP 1 Score: 125 bits (315), Expect = 1.380e-31
Identity = 70/185 (37.84%), Postives = 106/185 (57.30%), Query Frame = 1 
Query:   55 DEQKTETHPLSQKELTAIWEAIKSTKAADIKQTQFPDVDFKIEPGSDNYWGLFTALGFDELKKISQSSNPRKGFQYFVDQFGTTDALTDMRWLQAARALHLNPERSYHPLREPENKYQQRQRRDQLIFAELMVRKFLKSPEALKRYYQAVIWFDRMFHPLNFPVYQGVISRQLKKESPEDEYWWH 609
            +E   +   LS+K+L  IW  I+S           P  + + EP   +YW +   +G+ EL+KI  SSN R+G  ++V QFG TD+ +D RWL AA +  L  + S  PL + ++    +    QL+FAE  V++FL  P+ L RYYQ+V+W  RMF    FP+  G + R +KK+SP++ YWW+
Sbjct:   43 EENCNKPADLSKKDLIRIWVEIQSV----------PKKELEEEPV--DYWFMVWRVGYFELEKIICSSNVREGLNFYVSQFGKTDSQSDTRWLMAASSRLLPADISIRPLTDAKDNDSLKA---QLLFAEFQVKQFLSEPKLLARYYQSVVWRQRMFSDAFFPIRLGQVYRNMKKDSPDEHYWWY 212
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108736.1837.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
UPI00118D08CE1.950e-13996.55hypothetical protein n=1 Tax=Gimesia chilikensis T... [more]
A0A517VFK4_9PLAN5.990e-5754.55Uncharacterized protein n=2 Tax=Gimesia algae TaxI... [more]
A0A518IDZ6_9PLAN1.980e-4344.09Uncharacterized protein n=2 Tax=Gimesia fumaroli T... [more]
A0A2E7KAW0_9PLAN1.380e-3137.84Uncharacterized protein n=1 Tax=Gimesia sp. TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108736contigM-pyrifera_M_contig108736:3..611 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size609
Cds size609
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815597.3254843-CDS-M-pyrifera_M_contig108736:2..6111622815597.3254843-CDS-M-pyrifera_M_contig108736:2..611Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108736 3..611 +
1692277480.4891055-CDS-M-pyrifera_M_contig108736:2..6111692277480.4891055-CDS-M-pyrifera_M_contig108736:2..611Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108736 3..611 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108736.1837.1prot_M-pyrifera_M_contig108736.1837.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108736 3..611 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108736.1837.1

>prot_M-pyrifera_M_contig108736.1837.1 ID=prot_M-pyrifera_M_contig108736.1837.1|Name=mRNA_M-pyrifera_M_contig108736.1837.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=203bp
TALLLLLIYPCEMETVLADEQKTETHPLSQKELTAIWEAIKSTKAADIKQ
TQFPDVDFKIEPGSDNYWGLFTALGFDELKKISQSSNPRKGFQYFVDQFG
TTDALTDMRWLQAARALHLNPERSYHPLREPENKYQQRQRRDQLIFAELM
VRKFLKSPEALKRYYQAVIWFDRMFHPLNFPVYQGVISRQLKKESPEDEY
WWH
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mRNA from alignment at M-pyrifera_M_contig108736:3..611+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108736.1837.1 ID=mRNA_M-pyrifera_M_contig108736.1837.1|Name=mRNA_M-pyrifera_M_contig108736.1837.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=609bp|location=Sequence derived from alignment at M-pyrifera_M_contig108736:3..611+ (Macrocystis pyrifera P11B4 male)
ACCGCTCTGTTGCTGCTCTTAATTTATCCGTGCGAAATGGAAACGGTCCT
GGCGGATGAGCAGAAAACGGAAACACATCCCCTCTCTCAGAAAGAGCTGA
CAGCCATCTGGGAAGCCATTAAGTCGACGAAAGCTGCCGATATCAAGCAG
ACACAATTTCCAGACGTCGATTTCAAAATTGAACCAGGATCTGATAACTA
TTGGGGGTTGTTTACGGCCCTGGGGTTCGATGAACTCAAAAAGATCAGTC
AATCCTCGAATCCGCGTAAGGGGTTCCAGTACTTTGTGGATCAATTTGGC
ACTACAGATGCTTTGACGGATATGCGCTGGCTCCAGGCGGCCAGGGCCCT
GCACCTCAATCCAGAGCGTTCGTATCATCCGCTCAGAGAACCAGAGAATA
AGTATCAACAACGGCAACGTAGAGATCAGCTGATCTTTGCAGAGCTGATG
GTACGGAAATTTCTGAAATCTCCAGAAGCTCTTAAACGTTACTATCAGGC
TGTGATCTGGTTCGACAGAATGTTCCATCCCCTCAATTTTCCGGTCTATC
AAGGGGTGATTAGTCGTCAGTTAAAAAAAGAGAGTCCAGAAGATGAATAC
TGGTGGCAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108736:3..611+

>mRNA_M-pyrifera_M_contig108736.1837.1 ID=mRNA_M-pyrifera_M_contig108736.1837.1|Name=mRNA_M-pyrifera_M_contig108736.1837.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1218bp|location=Sequence derived from alignment at M-pyrifera_M_contig108736:3..611+ (Macrocystis pyrifera P11B4 male)
ACCGCTCTGTTGCTGCTCTTAATTTATCCGTGCGAAATGGAAACGGTCCT
GGCGGATGAGCAGAAAACGGAAACACATCCCCTCTCTCAGAAAGAGCTGA
CAGCCATCTGGGAAGCCATTAAGTCGACGAAAGCTGCCGATATCAAGCAG
ACACAATTTCCAGACGTCGATTTCAAAATTGAACCAGGATCTGATAACTA
TTGGGGGTTGTTTACGGCCCTGGGGTTCGATGAACTCAAAAAGATCAGTC
AATCCTCGAATCCGCGTAAGGGGTTCCAGTACTTTGTGGATCAATTTGGC
ACTACAGATGCTTTGACGGATATGCGCTGGCTCCAGGCGGCCAGGGCCCT
GCACCTCAATCCAGAGCGTTCGTATCATCCGCTCAGAGAACCAGAGAATA
AGTATCAACAACGGCAACGTAGAGATCAGCTGATCTTTGCAGAGCTGATG
GTACGGAAATTTCTGAAATCTCCAGAAGCTCTTAAACGTTACTATCAGGC
TGTGATCTGGTTCGACAGAATGTTCCATCCCCTCAATTTTCCGGTCTATC
AAGGGGTGATTAGTCGTCAGTTAAAAAAAGAGAGTCCAGAAGATGAATAC
TGGTGGCATACCGCTCTGTTGCTGCTCTTAATTTATCCGTGCGAAATGGA
AACGGTCCTGGCGGATGAGCAGAAAACGGAAACACATCCCCTCTCTCAGA
AAGAGCTGACAGCCATCTGGGAAGCCATTAAGTCGACGAAAGCTGCCGAT
ATCAAGCAGACACAATTTCCAGACGTCGATTTCAAAATTGAACCAGGATC
TGATAACTATTGGGGGTTGTTTACGGCCCTGGGGTTCGATGAACTCAAAA
AGATCAGTCAATCCTCGAATCCGCGTAAGGGGTTCCAGTACTTTGTGGAT
CAATTTGGCACTACAGATGCTTTGACGGATATGCGCTGGCTCCAGGCGGC
CAGGGCCCTGCACCTCAATCCAGAGCGTTCGTATCATCCGCTCAGAGAAC
CAGAGAATAAGTATCAACAACGGCAACGTAGAGATCAGCTGATCTTTGCA
GAGCTGATGGTACGGAAATTTCTGAAATCTCCAGAAGCTCTTAAACGTTA
CTATCAGGCTGTGATCTGGTTCGACAGAATGTTCCATCCCCTCAATTTTC
CGGTCTATCAAGGGGTGATTAGTCGTCAGTTAAAAAAAGAGAGTCCAGAA
GATGAATACTGGTGGCAT
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