mRNA_M-pyrifera_M_contig108717.1833.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108717.1833.1
Unique NamemRNA_M-pyrifera_M_contig108717.1833.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig108717.1833.1 vs. uniprot
Match: UPI00141329FF (dihydrodipicolinate synthase family protein n=1 Tax=Emticicia sp. CRIBPO TaxID=2683258 RepID=UPI00141329FF)

HSP 1 Score: 57.0 bits (136), Expect = 5.440e-8
Identity = 29/57 (50.88%), Postives = 44/57 (77.19%), Query Frame = 1
Query:    7 VVKCSNGRVPVVASGTFPEEESIEEKAAFVKRMYEGSGVDAVVVIVSQMCPKEGSDD 177
            +V+  NGRVP+VA+GTFP+  SIE +AAFVK +Y  +G+D+V+VI S +  +E S++
Sbjct:   64 IVEKVNGRVPIVATGTFPD--SIENQAAFVKEIY-STGIDSVIVITSLLAGEEDSEE 117          
BLAST of mRNA_M-pyrifera_M_contig108717.1833.1 vs. uniprot
Match: UPI00191FD6C7 (dihydrodipicolinate synthase family protein n=1 Tax=Chryseolinea sp. Jin1 TaxID=2801331 RepID=UPI00191FD6C7)

HSP 1 Score: 57.0 bits (136), Expect = 5.860e-8
Identity = 32/59 (54.24%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    1 RMVVKCSNGRVPVVASGTFPEEESIEEKAAFVKRMYEGSGVDAVVVIVSQMCPKEGSDD 177
            R VVK  NG +PVVA+G+F E  SIEE+AAF KRMY+ +GV+AV++I S    ++ +DD
Sbjct:  108 RHVVKQVNGAMPVVATGSFGE--SIEERAAFTKRMYD-TGVNAVILITSHFAKEDENDD 163          
BLAST of mRNA_M-pyrifera_M_contig108717.1833.1 vs. uniprot
Match: A0A1P9WW09_9BACT (Dihydrodipicolinate synthase family protein n=1 Tax=Spirosoma montaniterrae TaxID=1178516 RepID=A0A1P9WW09_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 1.940e-7
Identity = 29/57 (50.88%), Postives = 43/57 (75.44%), Query Frame = 1
Query:    7 VVKCSNGRVPVVASGTFPEEESIEEKAAFVKRMYEGSGVDAVVVIVSQMCPKEGSDD 177
            +V+  NGRVP+VA+GTFP+  S+E +AAFVK +Y  +GVD+V+VI S +  +  S+D
Sbjct:   64 IVQKVNGRVPIVATGTFPD--SLENQAAFVKEIY-STGVDSVIVITSLLAGEMDSED 117          
BLAST of mRNA_M-pyrifera_M_contig108717.1833.1 vs. uniprot
Match: UPI0003A801C4 (dihydrodipicolinate synthase family protein n=1 Tax=Spirosoma spitsbergense TaxID=431554 RepID=UPI0003A801C4)

HSP 1 Score: 55.5 bits (132), Expect = 1.990e-7
Identity = 32/58 (55.17%), Postives = 43/58 (74.14%), Query Frame = 1
Query:    1 RMVVKCSNGRVPVVASGTFPEEESIEEKAAFVKRMYEGSGVDAVVVIVSQMCPKEGSD 174
            R VV  + GRVPVVA+GTF    SIE++A FVKR+Y+ +GV AV+VI SQ+  ++ SD
Sbjct:   71 RQVVNRAGGRVPVVATGTFGG--SIEQQADFVKRIYD-TGVQAVIVITSQLASEDESD 125          
BLAST of mRNA_M-pyrifera_M_contig108717.1833.1 vs. uniprot
Match: A0A6M1E4X8_9SPHI (Dihydrodipicolinate synthase family protein n=1 Tax=Parapedobacter sp. SGR-10 TaxID=2710879 RepID=A0A6M1E4X8_9SPHI)

HSP 1 Score: 55.1 bits (131), Expect = 2.680e-7
Identity = 29/57 (50.88%), Postives = 42/57 (73.68%), Query Frame = 1
Query:    7 VVKCSNGRVPVVASGTFPEEESIEEKAAFVKRMYEGSGVDAVVVIVSQMCPKEGSDD 177
            +VK  NGRVP+VA+GTF  E++IE +A FVK MY  +GVDAV+VI   +  ++ S++
Sbjct:   66 IVKKVNGRVPIVATGTF--EDTIENQAEFVKAMY-ATGVDAVIVITGLLAKEDDSEE 119          
BLAST of mRNA_M-pyrifera_M_contig108717.1833.1 vs. uniprot
Match: A0A6M1N8B4_9SPHI (Dihydrodipicolinate synthase family protein n=1 Tax=Sphingobacterium sp. SGG-5 TaxID=2710881 RepID=A0A6M1N8B4_9SPHI)

HSP 1 Score: 55.1 bits (131), Expect = 2.710e-7
Identity = 29/57 (50.88%), Postives = 42/57 (73.68%), Query Frame = 1
Query:    7 VVKCSNGRVPVVASGTFPEEESIEEKAAFVKRMYEGSGVDAVVVIVSQMCPKEGSDD 177
            +VK  NGRVP+VA+GTF  E++IE +A FVK MY  +GVDAV+VI   +  ++ S++
Sbjct:   66 IVKHVNGRVPIVATGTF--EDTIENQAQFVKAMY-ATGVDAVIVITGLLAKEDDSEE 119          
BLAST of mRNA_M-pyrifera_M_contig108717.1833.1 vs. uniprot
Match: UPI0019D3BD88 (dihydrodipicolinate synthase family protein n=1 Tax=Algoriphagus oliviformis TaxID=2811231 RepID=UPI0019D3BD88)

HSP 1 Score: 55.1 bits (131), Expect = 2.830e-7
Identity = 31/58 (53.45%), Postives = 42/58 (72.41%), Query Frame = 1
Query:    1 RMVVKCSNGRVPVVASGTFPEEESIEEKAAFVKRMYEGSGVDAVVVIVSQMCPKEGSD 174
            R VVK  NG++PVVA+G+F +  +IEEKA F K+MY+ +GVDAV++I S    KE  D
Sbjct:  113 RHVVKQVNGKMPVVATGSFGD--TIEEKAEFAKKMYD-TGVDAVILISSHFADKEEDD 167          
BLAST of mRNA_M-pyrifera_M_contig108717.1833.1 vs. uniprot
Match: A0A514ZSP1_9BACT (Dihydrodipicolinate synthase family protein n=1 Tax=Spirosoma sp. KCTC 42546 TaxID=2520506 RepID=A0A514ZSP1_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 3.660e-7
Identity = 28/57 (49.12%), Postives = 43/57 (75.44%), Query Frame = 1
Query:    7 VVKCSNGRVPVVASGTFPEEESIEEKAAFVKRMYEGSGVDAVVVIVSQMCPKEGSDD 177
            +V+  NGRVP+VA+GTFP+  +++ +AAFVK MY  +GVD+V+VI S +  +  S+D
Sbjct:   64 IVQKVNGRVPIVATGTFPD--TLDNQAAFVKEMYH-TGVDSVIVITSLLAEETESED 117          
BLAST of mRNA_M-pyrifera_M_contig108717.1833.1 vs. uniprot
Match: A0A6L9L713_9BACT (Dihydrodipicolinate synthase family protein n=2 Tax=Spirosoma terrae TaxID=1968276 RepID=A0A6L9L713_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 3.680e-7
Identity = 28/57 (49.12%), Postives = 42/57 (73.68%), Query Frame = 1
Query:    7 VVKCSNGRVPVVASGTFPEEESIEEKAAFVKRMYEGSGVDAVVVIVSQMCPKEGSDD 177
            +V+  NGRVPVVA+GTFP+  S+E +AAFVK +Y  +G+D+V+VI   +  +  +DD
Sbjct:   64 IVQKVNGRVPVVATGTFPD--SLENQAAFVKEIYR-TGIDSVIVITGLLAEETDADD 117          
BLAST of mRNA_M-pyrifera_M_contig108717.1833.1 vs. uniprot
Match: A0A4R6WIP0_9SPHI (4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Sphingobacterium yanglingense TaxID=1437280 RepID=A0A4R6WIP0_9SPHI)

HSP 1 Score: 52.8 bits (125), Expect = 1.790e-6
Identity = 31/54 (57.41%), Postives = 40/54 (74.07%), Query Frame = 1
Query:   22 NGRVPVVASGTFPEEESIEEKAAFVKRMYEGSGVDAVVVIVSQMCPKEGSDDGT 183
            +GRVPVVA+GTF  +ESIE +AAFVK +Y  +G+ AV+VI S M  KE  D+ T
Sbjct:   71 DGRVPVVATGTF--DESIESQAAFVKEIY-STGIQAVIVITSLMA-KEQDDEAT 120          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108717.1833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00141329FF5.440e-850.88dihydrodipicolinate synthase family protein n=1 Ta... [more]
UPI00191FD6C75.860e-854.24dihydrodipicolinate synthase family protein n=1 Ta... [more]
A0A1P9WW09_9BACT1.940e-750.88Dihydrodipicolinate synthase family protein n=1 Ta... [more]
UPI0003A801C41.990e-755.17dihydrodipicolinate synthase family protein n=1 Ta... [more]
A0A6M1E4X8_9SPHI2.680e-750.88Dihydrodipicolinate synthase family protein n=1 Ta... [more]
A0A6M1N8B4_9SPHI2.710e-750.88Dihydrodipicolinate synthase family protein n=1 Ta... [more]
UPI0019D3BD882.830e-753.45dihydrodipicolinate synthase family protein n=1 Ta... [more]
A0A514ZSP1_9BACT3.660e-749.12Dihydrodipicolinate synthase family protein n=1 Ta... [more]
A0A6L9L713_9BACT3.680e-749.12Dihydrodipicolinate synthase family protein n=2 Ta... [more]
A0A4R6WIP0_9SPHI1.790e-657.414-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108717contigM-pyrifera_M_contig108717:191..445 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size186
Cds size183
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108717.1833.1prot_M-pyrifera_M_contig108717.1833.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108717 191..442 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815597.0925674-CDS-M-pyrifera_M_contig108717:190..3001622815597.0925674-CDS-M-pyrifera_M_contig108717:190..300Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108717 191..300 -
1692277480.3570437-CDS-M-pyrifera_M_contig108717:190..3001692277480.3570437-CDS-M-pyrifera_M_contig108717:190..300Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108717 191..300 -
1622815597.1053379-CDS-M-pyrifera_M_contig108717:369..4421622815597.1053379-CDS-M-pyrifera_M_contig108717:369..442Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108717 370..442 -
1692277480.3661299-CDS-M-pyrifera_M_contig108717:369..4421692277480.3661299-CDS-M-pyrifera_M_contig108717:369..442Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108717 370..442 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815597.1150002-UTR-M-pyrifera_M_contig108717:442..4451622815597.1150002-UTR-M-pyrifera_M_contig108717:442..445Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig108717 443..445 -
1692277480.3742375-UTR-M-pyrifera_M_contig108717:442..4451692277480.3742375-UTR-M-pyrifera_M_contig108717:442..445Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig108717 443..445 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108717.1833.1

>prot_M-pyrifera_M_contig108717.1833.1 ID=prot_M-pyrifera_M_contig108717.1833.1|Name=mRNA_M-pyrifera_M_contig108717.1833.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=61bp
MVVKCSNGRVPVVASGTFPEEESIEEKAAFVKRMYEGSGVDAVVVIVSQM
CPKEGSDDGT*
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mRNA from alignment at M-pyrifera_M_contig108717:191..445-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108717.1833.1 ID=mRNA_M-pyrifera_M_contig108717.1833.1|Name=mRNA_M-pyrifera_M_contig108717.1833.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=255bp|location=Sequence derived from alignment at M-pyrifera_M_contig108717:191..445- (Macrocystis pyrifera P11B4 male)
CGGATGGTAGTCAAGTGCTCCAACGGGCGTGTTCCGGTGGTGGCCTCGGG CACATTCCCCGAGGAGGAGAGCATTGGTAGCCCTTCCCTCATGCGCAGAC ACCTCCCCTCCTGAACACAGGAGCATTTGCTGACGTAATTTGAAGAGGAG AAGGCGGCATTCGTCAAGCGGATGTATGAGGGGAGCGGAGTGGATGCCGT GGTCGTGATCGTCAGCCAAATGTGTCCAAAGGAAGGGAGCGATGATGGTA CGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108717:191..445-

>mRNA_M-pyrifera_M_contig108717.1833.1 ID=mRNA_M-pyrifera_M_contig108717.1833.1|Name=mRNA_M-pyrifera_M_contig108717.1833.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig108717:191..445- (Macrocystis pyrifera P11B4 male)
ATGGTAGTCAAGTGCTCCAACGGGCGTGTTCCGGTGGTGGCCTCGGGCAC
ATTCCCCGAGGAGGAGAGCATTGATGGTAGTCAAGTGCTCCAACGGGCGT
GTTCCGGTGGTGGCCTCGGGCACATTCCCCGAGGAGGAGAGCATTGAGGA
GAAGGCGGCATTCGTCAAGCGGATGTATGAGGGGAGCGGAGTGGATGCCG
TGGTCGTGATCGTCAGCCAAATGTGTCCAAAGGAAGGGAGCGATGATGGT
ACGTGAAGGAGAAGGCGGCATTCGTCAAGCGGATGTATGAGGGGAGCGGA
GTGGATGCCGTGGTCGTGATCGTCAGCCAAATGTGTCCAAAGGAAGGGAG
CGATGATGGTACGTGA
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