mRNA_M-pyrifera_M_contig108713.1832.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108713.1832.1
Unique NamemRNA_M-pyrifera_M_contig108713.1832.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig108713.1832.1 vs. uniprot
Match: I0YLT0_COCSC (Alpha/beta-hydrolase (Fragment) n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YLT0_COCSC)

HSP 1 Score: 82.4 bits (202), Expect = 4.910e-16
Identity = 53/156 (33.97%), Postives = 71/156 (45.51%), Query Frame = 1
Query:   10 IAAVPCLAPYCASRVFCEGVLRDWCDWKAL-------DAAIPDKAEGASSEAYLRQFLAN---------CTDLRRFPLPQLPSAVIQVAARYDQYIPGTG-DALHGHWKGSELRWIPHGHITGYLFGISDFISATVDAFTALVHHKKAARDCSKSS 426
            +A VP LAP  A+  FC G LR+   W+ L       D   P      S E    Q LA           TD+ RFP P+ P A + V A  D Y+       L  HW GS++RW+P GH++ +L     F  A +DA   L     AA+D + S+
Sbjct:  142 LACVPLLAPRSAAVAFCHGALREATAWQPLLAAADEADKVCPSVFPSQSHETVAAQKLARERLDKVLETYTDVTRFPRPRRPDAAVIVGAHNDAYVSAHSVRELAAHWPGSQVRWVPGGHVSAFLLQQPAFRQAILDALERLSEPAAAAQDSASSA 297          
BLAST of mRNA_M-pyrifera_M_contig108713.1832.1 vs. uniprot
Match: A0A2D9TBX9_9DELT (Uncharacterized protein n=1 Tax=Sandaracinus sp. TaxID=2024858 RepID=A0A2D9TBX9_9DELT)

HSP 1 Score: 73.6 bits (179), Expect = 1.750e-12
Identity = 47/128 (36.72%), Postives = 63/128 (49.22%), Query Frame = 1
Query:   10 IAAVPCLAPYCASRVFCEGVLRDWCDWKALDAAIPDKAEGASSEAYLRQFLANCTDLR--RFPLPQLPSAVIQVAARYDQYIPGT-GDALHGHWKGSELRWIPHGHITGYLFGISDFISATVDAFTAL 384
            +A  P  A   A  +F +G L +   W  L       AE  S EA   +F A   ++R  RF  P +P A + VA+  D ++P    +ALH HW GSELRW+P GH TG +       +A VDA   L
Sbjct:  357 VAVAPRGAALSAEPIFTDGALMNAMRWDVL------AAEAGSFEAARARFAAALGEVRIDRFGPPAVPEAAVLVASEDDGFVPAEEAEALHRHWPGSELRWVPAGHFTGLVLHHHVHRAAVVDAMARL 478          
BLAST of mRNA_M-pyrifera_M_contig108713.1832.1 vs. uniprot
Match: A0A7Y3MFV5_9ACTN (Alpha/beta hydrolase family protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y3MFV5_9ACTN)

HSP 1 Score: 63.2 bits (152), Expect = 3.500e-10
Identity = 41/92 (44.57%), Postives = 51/92 (55.43%), Query Frame = 1
Query:   52 VFCEGVLRDWCDWKALDAAIPDKAEGASSEAYLRQFLANCTDLRRFPLPQLPSAVIQVAARYDQYIPGTG-DALHGHWKGSELRWIPHGHIT 324
            V+ +G+L    DW AL      ++ GA  E  LR+ L + + L   P P   +AVI V AR D YIP     ALH HW GSELRW+P GH T
Sbjct:    7 VWLDGILTHMVDWDALGG----RSNGA--EDRLRRHLTSASVLAVPPRPHTATAVI-VGARRDGYIPPAAVKALHEHWPGSELRWLPGGHAT 91          
BLAST of mRNA_M-pyrifera_M_contig108713.1832.1 vs. uniprot
Match: E1ZT60_CHLVA (Uncharacterized protein (Fragment) n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZT60_CHLVA)

HSP 1 Score: 65.9 bits (159), Expect = 4.270e-10
Identity = 34/82 (41.46%), Postives = 46/82 (56.10%), Query Frame = 1
Query:  142 AYLRQFLANCTDLRRFPLPQLPSAVIQVAARYDQYI-PGTGDALHGHWKGSELRWIPHGHITGYLFGISDFISATVDAFTAL 384
            A L + L   TD+ RFP PQ P AV+ V A++D Y+ P +   L  H  GSE+RW+P GH+T +L     F  A  D+   L
Sbjct:  163 AALHEVLETYTDVTRFPRPQRPDAVVIVGAQHDAYVSPQSVLELQQHLTGSEVRWVPGGHVTSFLLHHGSFRRAIADSLAKL 244          
BLAST of mRNA_M-pyrifera_M_contig108713.1832.1 vs. uniprot
Match: A0A520XYL9_9ACTN (Abhydrolase domain-containing 18 n=2 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A520XYL9_9ACTN)

HSP 1 Score: 63.5 bits (153), Expect = 4.150e-9
Identity = 43/109 (39.45%), Postives = 56/109 (51.38%), Query Frame = 1
Query:    1 EEEIAAVPCLAPYCASRVFCEGVLRDWCDWKALDAAIPDKAEGASSEAYLRQFLANCTDLRRFPLPQLPSAVIQVAARYDQYIPGTG-DALHGHWKGSELRWIPHGHIT 324
            E  +A     A +    V+ +G+L    DW AL      ++ GA  E  LR+ L + + L   P P   +AVI V AR D YIP    +ALH HW GS LRW+P GH T
Sbjct:  195 ETPVAIAGLAASHSPGPVWLDGILTHMVDWDALGG----RSNGA--EDRLRRHLTSASVLAVPPRPHTATAVI-VGARRDGYIPPAAVEALHEHWPGSGLRWLPGGHAT 296          
BLAST of mRNA_M-pyrifera_M_contig108713.1832.1 vs. uniprot
Match: A0A8J9S8W2_9CHLO (Protein ABHD18 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9S8W2_9CHLO)

HSP 1 Score: 62.8 bits (151), Expect = 1.040e-8
Identity = 31/80 (38.75%), Postives = 44/80 (55.00%), Query Frame = 1
Query:  148 LRQFLANCTDLRRFPLPQLPSAVIQVAARYDQYI-PGTGDALHGHWKGSELRWIPHGHITGYLFGISDFISATVDAFTAL 384
            L + L   TD+ RFP PQ P A + V A  D Y+ P +   L  HW GS++RW+P GH++ +L     F  A +D+   L
Sbjct:  441 LDKVLETYTDVTRFPRPQRPDAAVIVGAHNDAYVSPHSVRELAAHWPGSQVRWVPGGHVSAFLLQQPAFRKAILDSLERL 520          
BLAST of mRNA_M-pyrifera_M_contig108713.1832.1 vs. uniprot
Match: A0A2P6VRY8_9CHLO (Uncharacterized protein n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VRY8_9CHLO)

HSP 1 Score: 59.7 bits (143), Expect = 1.340e-7
Identity = 33/82 (40.24%), Postives = 42/82 (51.22%), Query Frame = 1
Query:  142 AYLRQFLANCTDLRRFPLPQLPSAVIQVAARYDQYI-PGTGDALHGHWKGSELRWIPHGHITGYLFGISDFISATVDAFTAL 384
            A L   L   TD+ RFP PQ   A + V A  D Y+ P +   L  H  GSE+RW+P GH+T +L     F  A VD+   L
Sbjct:  552 ARLHAVLETYTDVTRFPKPQRTDAAVIVGALQDAYVSPQSVLELQQHLTGSEVRWVPGGHVTSFLLHHGSFRQAIVDSLVKL 633          
BLAST of mRNA_M-pyrifera_M_contig108713.1832.1 vs. uniprot
Match: A0A2P6TEX0_CHLSO (Alpha beta-isoform A n=3 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TEX0_CHLSO)

HSP 1 Score: 59.3 bits (142), Expect = 1.840e-7
Identity = 34/95 (35.79%), Postives = 47/95 (49.47%), Query Frame = 1
Query:  142 AYLRQFLANCTDLRRFPLPQLPSAVIQVAARYDQYI-PGTGDALHGHWKGSELRWIPHGHITGYLFGISDFISATVDAFTALVHHKKAARDCSKS 423
            A L   L   TD+ RFP P+   A + V A+ D Y+ P +   L  H  GSE+RW+P GH+T +L     F  A VD+   L      A   ++S
Sbjct:  413 ARLHAVLETYTDVTRFPKPRRTDAAVIVGAQQDAYVSPQSILELQQHLAGSEVRWVPGGHVTSFLLHHRSFRQAIVDSLAKLAQPPPLATTAAQS 507          
BLAST of mRNA_M-pyrifera_M_contig108713.1832.1 vs. uniprot
Match: S4YFM2_SORCE (Uncharacterized protein n=4 Tax=Sorangium cellulosum TaxID=56 RepID=S4YFM2_SORCE)

HSP 1 Score: 58.5 bits (140), Expect = 2.600e-7
Identity = 38/115 (33.04%), Postives = 52/115 (45.22%), Query Frame = 1
Query:   43 ASRVFCEGVLRDWCDWKALDAAIPDKAEGASSEAYLRQFLANCTDLRRFPLPQLPSAVIQVAARYDQYIPGTG-DALHGHWKGSELRWIPHGHITGYLFGISDFISATVDAFTAL 384
            A  VF EG+L    +++AL      +A   +        L    DL R P P+ P A + V  R D Y+     +ALH HW+ SELRW+  GH    ++       A VDA   L
Sbjct:  222 AVPVFTEGMLSVSVEFEALGGPAAARARLGA--------LFGAADLDRHPAPRRPDATVLVGGRRDGYVFAEQVEALHAHWRSSELRWLDTGHAGAIVYRAEALRRAAVDAMARL 328          
BLAST of mRNA_M-pyrifera_M_contig108713.1832.1 vs. uniprot
Match: M2X589_GALSU (Uncharacterized protein n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2X589_GALSU)

HSP 1 Score: 56.2 bits (134), Expect = 1.680e-6
Identity = 27/68 (39.71%), Postives = 38/68 (55.88%), Query Frame = 1
Query:  172 TDLRRFPLPQLPSAVIQVAARYDQYIPGTGDALHGH-WKGSELRWIPHGHITGYLFGISDFISATVDA 372
            +D+R FP P  P+A I +A   D+YIP     +    W   E+RWIP GH+TG+LF       A +D+
Sbjct:  257 SDIRHFPQPANPNAAILLAGENDKYIPRECVEMFSKAWPHMEIRWIPSGHVTGFLFYRQHIFQAILDS 324          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108713.1832.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
I0YLT0_COCSC4.910e-1633.97Alpha/beta-hydrolase (Fragment) n=1 Tax=Coccomyxa ... [more]
A0A2D9TBX9_9DELT1.750e-1236.72Uncharacterized protein n=1 Tax=Sandaracinus sp. T... [more]
A0A7Y3MFV5_9ACTN3.500e-1044.57Alpha/beta hydrolase family protein n=1 Tax=Acidim... [more]
E1ZT60_CHLVA4.270e-1041.46Uncharacterized protein (Fragment) n=1 Tax=Chlorel... [more]
A0A520XYL9_9ACTN4.150e-939.45Abhydrolase domain-containing 18 n=2 Tax=Acidimicr... [more]
A0A8J9S8W2_9CHLO1.040e-838.75Protein ABHD18 n=1 Tax=Coccomyxa sp. Obi TaxID=231... [more]
A0A2P6VRY8_9CHLO1.340e-740.24Uncharacterized protein n=1 Tax=Micractinium condu... [more]
A0A2P6TEX0_CHLSO1.840e-735.79Alpha beta-isoform A n=3 Tax=Chlorella sorokiniana... [more]
S4YFM2_SORCE2.600e-733.04Uncharacterized protein n=4 Tax=Sorangium cellulos... [more]
M2X589_GALSU1.680e-639.71Uncharacterized protein n=2 Tax=Galdieria sulphura... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108713contigM-pyrifera_M_contig108713:147..578 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.2
Seed ortholog evalue3.1e-24
Seed eggNOG ortholog529818.AMSG_00873T0
Preferred nameC4orf29
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein C4orf29 homolog
EggNOG OGsKOG1551@1,KOG1551@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size432
Cds size432
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815597.0581188-CDS-M-pyrifera_M_contig108713:146..5781622815597.0581188-CDS-M-pyrifera_M_contig108713:146..578Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108713 147..578 -
1692277480.344414-CDS-M-pyrifera_M_contig108713:146..5781692277480.344414-CDS-M-pyrifera_M_contig108713:146..578Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108713 147..578 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108713.1832.1prot_M-pyrifera_M_contig108713.1832.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108713 147..578 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108713.1832.1

>prot_M-pyrifera_M_contig108713.1832.1 ID=prot_M-pyrifera_M_contig108713.1832.1|Name=mRNA_M-pyrifera_M_contig108713.1832.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=144bp
EEEIAAVPCLAPYCASRVFCEGVLRDWCDWKALDAAIPDKAEGASSEAYL
RQFLANCTDLRRFPLPQLPSAVIQVAARYDQYIPGTGDALHGHWKGSELR
WIPHGHITGYLFGISDFISATVDAFTALVHHKKAARDCSKSSP*
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mRNA from alignment at M-pyrifera_M_contig108713:147..578-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108713.1832.1 ID=mRNA_M-pyrifera_M_contig108713.1832.1|Name=mRNA_M-pyrifera_M_contig108713.1832.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig108713:147..578- (Macrocystis pyrifera P11B4 male)
GAAGAGGAAATTGCTGCAGTGCCCTGCTTGGCTCCCTACTGTGCGTCGCG TGTGTTTTGTGAGGGTGTCCTGCGGGACTGGTGCGATTGGAAGGCTCTCG ACGCCGCCATTCCCGACAAGGCAGAGGGAGCCAGCTCTGAGGCGTATCTC CGGCAGTTTCTCGCGAATTGCACTGATCTTCGGAGGTTTCCTTTGCCTCA GTTGCCGTCTGCTGTGATCCAGGTGGCGGCGAGGTACGACCAATACATCC CCGGCACTGGCGACGCACTCCACGGCCATTGGAAGGGCTCAGAGCTCCGT TGGATTCCCCATGGCCACATCACAGGCTATCTCTTTGGAATCTCTGACTT CATCTCCGCTACCGTCGATGCCTTCACTGCTCTGGTGCACCACAAGAAGG CTGCCAGGGACTGCAGCAAATCTTCTCCATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108713:147..578-

>mRNA_M-pyrifera_M_contig108713.1832.1 ID=mRNA_M-pyrifera_M_contig108713.1832.1|Name=mRNA_M-pyrifera_M_contig108713.1832.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=864bp|location=Sequence derived from alignment at M-pyrifera_M_contig108713:147..578- (Macrocystis pyrifera P11B4 male)
GAAGAGGAAATTGCTGCAGTGCCCTGCTTGGCTCCCTACTGTGCGTCGCG
TGTGTTTTGTGAGGGTGTCCTGCGGGACTGGTGCGATTGGAAGGCTCTCG
ACGCCGCCATTCCCGACAAGGCAGAGGGAGCCAGCTCTGAGGCGTATCTC
CGGCAGTTTCTCGCGAATTGCACTGATCTTCGGAGGTTTCCTTTGCCTCA
GTTGCCGTCTGCTGTGATCCAGGTGGCGGCGAGGTACGACCAATACATCC
CCGGCACTGGCGACGCACTCCACGGCCATTGGAAGGGCTCAGAGCTCCGT
TGGATTCCCCATGGCCACATCACAGGCTATCTCTTTGGAATCTCTGACTT
CATCTCCGCTACCGTCGATGCCTTCACTGCTCTGGTGCACCACAAGAAGG
CTGCCAGGGACTGCAGCAAATCTTCTCCATAGGAAGAGGAAATTGCTGCA
GTGCCCTGCTTGGCTCCCTACTGTGCGTCGCGTGTGTTTTGTGAGGGTGT
CCTGCGGGACTGGTGCGATTGGAAGGCTCTCGACGCCGCCATTCCCGACA
AGGCAGAGGGAGCCAGCTCTGAGGCGTATCTCCGGCAGTTTCTCGCGAAT
TGCACTGATCTTCGGAGGTTTCCTTTGCCTCAGTTGCCGTCTGCTGTGAT
CCAGGTGGCGGCGAGGTACGACCAATACATCCCCGGCACTGGCGACGCAC
TCCACGGCCATTGGAAGGGCTCAGAGCTCCGTTGGATTCCCCATGGCCAC
ATCACAGGCTATCTCTTTGGAATCTCTGACTTCATCTCCGCTACCGTCGA
TGCCTTCACTGCTCTGGTGCACCACAAGAAGGCTGCCAGGGACTGCAGCA
AATCTTCTCCATAG
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