mRNA_M-pyrifera_M_contig108712.1831.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108712.1831.1
Unique NamemRNA_M-pyrifera_M_contig108712.1831.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig108712.1831.1 vs. uniprot
Match: A0A2P6MY71_9EUKA (ABC transporter domain-containing protein n=2 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MY71_9EUKA)

HSP 1 Score: 100 bits (250), Expect = 2.970e-22
Identity = 56/126 (44.44%), Postives = 85/126 (67.46%), Query Frame = 1
Query:    1 HNMEEADVLCNRIGIMARGQLICIGSQAHLKKKFGTGFTVQVMS--DDHHKSHDFILSIFPTAVQDMDSSMSGLLCYRIPQNTELDLVGLFTAM-KDRAVYGIKEWSIQQTTLEEVFLKVFEFEEA 369
            HNMEEADVL +RI I++RG L+CIGSQ  LK+++G G+ + +    D   ++  ++LS+FPTA   +D+   G + + IP  T++D+  LF+ M K++   GI EW + Q +LEEVF+KV E +EA
Sbjct:  779 HNMEEADVLSSRIAIVSRGNLVCIGSQMDLKRQYGRGYKLSISPRLDCSERAKAYVLSLFPTAT--VDTISVGTINFYIP-TTDVDVSSLFSEMMKNKDENGIIEWGVSQASLEEVFIKVVEKDEA 901          
BLAST of mRNA_M-pyrifera_M_contig108712.1831.1 vs. uniprot
Match: UPI000644E530 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644E530)

HSP 1 Score: 94.7 bits (234), Expect = 4.220e-20
Identity = 53/121 (43.80%), Postives = 77/121 (63.64%), Query Frame = 1
Query:    1 HNMEEADVLCNRIGIMARGQLICIGSQAHLKKKFGTGFTVQVMSDDHHKSHD---FILSIFPTAVQDMDSSMSGLLCYRIPQNTELDLVGLFTAM-KDRAVYGIKEWSIQQTTLEEVFLKV 351
            H+MEEADVL  RIGIM++G+L C+G Q HLK KFG G+++++     H  +D    I    P A+  +  S SG   YR+P++T +    LFT M +++    + EW IQQT+LE+VFLK+
Sbjct:  694 HSMEEADVLSTRIGIMSQGKLQCVGPQQHLKSKFGEGYSLKLNVHPSHPEYDPTSLIQKFAPEAI--LIESFSGSFVYRLPKDTLIS--DLFTFMLQNKETNHVTEWGIQQTSLEDVFLKI 810          
BLAST of mRNA_M-pyrifera_M_contig108712.1831.1 vs. uniprot
Match: A0A151ZB71_9MYCE (ABC transporter A family protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZB71_9MYCE)

HSP 1 Score: 93.6 bits (231), Expect = 1.080e-19
Identity = 49/122 (40.16%), Postives = 78/122 (63.93%), Query Frame = 1
Query:    1 HNMEEADVLCNRIGIMARGQLICIGSQAHLKKKFGTGFTVQVMSDDHHKSHDFILSIFPTAV--QDMDSSMSGLLCYRIPQNTELDLVGLFTAMKD-RAVYGIKEWSIQQTTLEEVFLKVFE 357
            HNM+EADVLCN+I I+A G+L C+GS  +LK KFG G+TV ++ +    +   I +I       Q + S + G L + IP++ ++ +  LF  + + +  +GIKEW I QT+LE+VF+++ E
Sbjct:  741 HNMQEADVLCNKIAIVAAGRLQCVGSPLYLKNKFGAGYTVHIVPESQAHAAGIIENIKGAYANCQQVTSEVDGALAFVIPKSEDITI--LFRMISENKQSFGIKEWGISQTSLEDVFMRIAE 860          
BLAST of mRNA_M-pyrifera_M_contig108712.1831.1 vs. uniprot
Match: ABCA7_DICDI (ABC transporter A family member 7 n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=ABCA7_DICDI)

HSP 1 Score: 93.2 bits (230), Expect = 1.460e-19
Identity = 49/122 (40.16%), Postives = 84/122 (68.85%), Query Frame = 1
Query:    1 HNMEEADVLCNRIGIMARGQLICIGSQAHLKKKFGTGFTVQV-MSDDHHKSH---DFILSIFPTAVQDMDSSMSGLLCYRIPQNTEL-DLVGLFTAMKDRAVYGIKEWSIQQTTLEEVFLKV 351
            H+M+EAD+L +RI I+++G+L CIG+Q HLK+KFG G++V++ + +D+  +H   D I S  P+A   +  + +G   YR+P+++ + DL       K++  Y ++EWS+ QT+LE+VFLK+
Sbjct:  714 HSMQEADILSDRIAIVSQGKLQCIGTQTHLKQKFGDGYSVRIDIQEDYQNTHNPTDLIKSFSPSAT--LSETFNGSYVYRLPKDSIISDLYEYLVLNKEQ--YHLQEWSLSQTSLEDVFLKI 831          
BLAST of mRNA_M-pyrifera_M_contig108712.1831.1 vs. uniprot
Match: D3BDQ3_POLPP (ABC transporter A family protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BDQ3_POLPP)

HSP 1 Score: 93.2 bits (230), Expect = 1.470e-19
Identity = 51/128 (39.84%), Postives = 84/128 (65.62%), Query Frame = 1
Query:    1 HNMEEADVLCNRIGIMARGQLICIGSQAHLKKKFGTGFTVQVMS-DDHHKSH--DFILSIFPTAVQDMDSSMSGLLCYRIPQNTELDLVGLFTAMKDRAVYGIKEWSIQQTTLEEVFLKVFEFEEAAT 375
            HNMEEADVL N+I I+A G+L C+GS  +LK ++G GF +Q++  ++  +S    F+L  +P A+Q    S+S  L + IP+++++  +      K++   GIKEW + QT+LE++F+K+ E EEA +
Sbjct:  752 HNMEEADVLSNKIAIIASGRLQCVGSPIYLKNRYGNGFKLQIVPLNEGFRSSLIKFVLDNYPMAMQ--QESVSDELIFLIPKDSDISTI-FDIISKNKHELGIKEWGVSQTSLEDIFMKMVEREEATS 876          
BLAST of mRNA_M-pyrifera_M_contig108712.1831.1 vs. uniprot
Match: A0A507FCS2_9FUNG (ABC transporter domain-containing protein n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FCS2_9FUNG)

HSP 1 Score: 93.2 bits (230), Expect = 1.490e-19
Identity = 47/129 (36.43%), Postives = 80/129 (62.02%), Query Frame = 1
Query:    1 HNMEEADVLCNRIGIMARGQLICIGSQAHLKKKFGTGFTVQVMS--DDHHKSHDFILSIFPTAVQDMDSSMSGLLCYRIPQNTELDLVGLFTAMK-DRAVYGIKEWSIQQTTLEEVFLKVFEFEEAATD 378
            H+MEEA+ LC RIGIMA+G + C+G    LK+ +G+GF +  +S  +D  ++ +F+ S+ P   + MD+  +    Y  P +    +  +F  ++ ++A +G+ +WSI QTTLEEVF+K+   ++A  D
Sbjct:  903 HSMEEAEALCTRIGIMAKGSMRCLGKPLRLKELYGSGFKLSFISKEEDTARASEFVESVMPLGWRKMDAFATST-AYEFPSSERAKIPAMFKKIEAEKADHGVLQWSISQTTLEEVFVKIISGDDANAD 1030          
BLAST of mRNA_M-pyrifera_M_contig108712.1831.1 vs. uniprot
Match: A0A7S4I531_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I531_9EUKA)

HSP 1 Score: 92.4 bits (228), Expect = 1.790e-19
Identity = 48/120 (40.00%), Postives = 81/120 (67.50%), Query Frame = 1
Query:    1 HNMEEADVLCNRIGIMARGQLICIGSQAHLKKKFGTGFTVQVMSDDHHKSH--DFILSIFPTAVQDMDSSMSGLLCYRIPQNTELDLVGLFTAMK-DRAVYGIKEWSIQQTTLEEVFLKV 351
            H+MEEAD+LC+RIGIM+RG+L+CIG+Q HLK KFG G+T+ V   + ++    +FI ++ P A   +  + +G   Y++ +  +L +  LF  M+ ++   G+ +W I QTT+E+VF+++
Sbjct:  307 HSMEEADILCSRIGIMSRGRLMCIGTQLHLKNKFGEGYTLHVNFTERNEQSVLNFISNLLPGAT--LMENFAGNCIYQLKKQ-DLTISELFEEMESNKKRVGVVDWGITQTTMEDVFIRI 423          
BLAST of mRNA_M-pyrifera_M_contig108712.1831.1 vs. uniprot
Match: D3BDQ6_POLPP (ABC transporter A family protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BDQ6_POLPP)

HSP 1 Score: 92.8 bits (229), Expect = 1.980e-19
Identity = 51/126 (40.48%), Postives = 83/126 (65.87%), Query Frame = 1
Query:    1 HNMEEADVLCNRIGIMARGQLICIGSQAHLKKKFGTGFTVQVMS-DDHHKSH--DFILSIFPTAVQDMDSSMSGLLCYRIPQNTELDLVGLFTAMKDRAVYGIKEWSIQQTTLEEVFLKVFEFEEA 369
            HNMEEADVL N+I I+A G+L C+GS  +LK ++G GF +Q++  ++  +S    F+L  +P A+Q    S+S  L + IP+++++  +      K++   GIKEW + QT+LEE+F+K+ E EE+
Sbjct:  666 HNMEEADVLSNKIAIIASGRLQCVGSPIYLKNRYGNGFKLQIVPLNEGFRSSLIKFVLDNYPMAMQ--QESVSDELIFLIPKDSDISTI-FDIISKNKHELGIKEWGVSQTSLEEIFMKMVEREES 788          
BLAST of mRNA_M-pyrifera_M_contig108712.1831.1 vs. uniprot
Match: UPI000644CFD5 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644CFD5)

HSP 1 Score: 92.4 bits (228), Expect = 2.720e-19
Identity = 53/126 (42.06%), Postives = 83/126 (65.87%), Query Frame = 1
Query:    1 HNMEEADVLCNRIGIMARGQLICIGSQAHLKKKFGTGFTVQVM--SDDHHKS--HDFILSIFPTAVQDMDSSMSGLLCYRIPQNTELDLVGLFTAMKDRAVY-GIKEWSIQQTTLEEVFLKVFEFE 363
            HNMEEADVLCN+I I+A G+L CIGS  +LK +FG GF ++V+  +D + +S  H  ++S +PTA+   + ++   L + IP+    D+  +F  + +  V  G+KEW + QT+LEE+F+K+ E E
Sbjct:  727 HNMEEADVLCNKIAIVASGRLQCIGSPLYLKNRFGNGFKLEVVPVADQYRESIVHT-VMSTYPTAIT--EEAVGQELIFLIPKQE--DIGRIFEVIANNKVQMGVKEWGVSQTSLEEIFMKMVENE 847          
BLAST of mRNA_M-pyrifera_M_contig108712.1831.1 vs. uniprot
Match: D3BE51_POLPP (ABC transporter A family protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BE51_POLPP)

HSP 1 Score: 91.7 bits (226), Expect = 5.060e-19
Identity = 55/125 (44.00%), Postives = 77/125 (61.60%), Query Frame = 1
Query:    1 HNMEEADVLCNRIGIMARGQLICIGSQAHLKKKFGTGFTVQVMSDDHHKSH-------DFILSIFPTAVQDMDSSMSGLLCYRIPQNTEL-DLVGLFTAMKDRAVYGIKEWSIQQTTLEEVFLKV 351
            H+MEEADVL  RIGI+++G+L CIG Q HLK KFG G+++++   + H SH       + I    P A+  +  S SG   YR+P+ T + +L       KD+  Y I EW IQQT+LE+VFLK+
Sbjct:  712 HSMEEADVLSTRIGIISQGKLQCIGPQQHLKSKFGEGYSLKI---NIHPSHVDDFQPTELIHKFSPDAL--LIESFSGSYVYRLPKETLISELCAFMLQSKDK--YHITEWGIQQTSLEDVFLKI 829          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108712.1831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P6MY71_9EUKA2.970e-2244.44ABC transporter domain-containing protein n=2 Tax=... [more]
UPI000644E5304.220e-2043.80hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A151ZB71_9MYCE1.080e-1940.16ABC transporter A family protein n=1 Tax=Tieghemos... [more]
ABCA7_DICDI1.460e-1940.16ABC transporter A family member 7 n=1 Tax=Dictyost... [more]
D3BDQ3_POLPP1.470e-1939.84ABC transporter A family protein n=1 Tax=Polysphon... [more]
A0A507FCS2_9FUNG1.490e-1936.43ABC transporter domain-containing protein n=1 Tax=... [more]
A0A7S4I531_9EUKA1.790e-1940.00Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
D3BDQ6_POLPP1.980e-1940.48ABC transporter A family protein n=1 Tax=Polysphon... [more]
UPI000644CFD52.720e-1942.06hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
D3BE51_POLPP5.060e-1944.00ABC transporter A family protein n=1 Tax=Polysphon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108712contigM-pyrifera_M_contig108712:87..467 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score92.4
Seed ortholog evalue1.6e-16
Seed eggNOG ortholog7029.ACYPI006824-PA
KEGG koko:K05648
KEGG TC3.A.1.211
KEGG Pathwayko02010,map02010
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ABC-2 family transporter protein
EggNOG OGs38BPG@33154,3BBB4@33208,3CSBI@33213,3ECQF@33342,3SJPF@50557,41WUY@6656,COG1131@1,KOG0059@2759
COG Functional cat.Q
Best tax levelParaneoptera
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons1
Model size381
Cds size375
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815597.0095432-CDS-M-pyrifera_M_contig108712:86..4611622815597.0095432-CDS-M-pyrifera_M_contig108712:86..461Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108712 87..461 -
1692277480.3205786-CDS-M-pyrifera_M_contig108712:86..4611692277480.3205786-CDS-M-pyrifera_M_contig108712:86..461Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108712 87..461 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815597.0257475-UTR-M-pyrifera_M_contig108712:461..4671622815597.0257475-UTR-M-pyrifera_M_contig108712:461..467Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig108712 462..467 -
1692277480.3333504-UTR-M-pyrifera_M_contig108712:461..4671692277480.3333504-UTR-M-pyrifera_M_contig108712:461..467Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig108712 462..467 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108712.1831.1prot_M-pyrifera_M_contig108712.1831.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108712 87..461 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108712.1831.1

>prot_M-pyrifera_M_contig108712.1831.1 ID=prot_M-pyrifera_M_contig108712.1831.1|Name=mRNA_M-pyrifera_M_contig108712.1831.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=125bp
MEEADVLCNRIGIMARGQLICIGSQAHLKKKFGTGFTVQVMSDDHHKSHD
FILSIFPTAVQDMDSSMSGLLCYRIPQNTELDLVGLFTAMKDRAVYGIKE
WSIQQTTLEEVFLKVFEFEEAATD*
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mRNA from alignment at M-pyrifera_M_contig108712:87..467-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108712.1831.1 ID=mRNA_M-pyrifera_M_contig108712.1831.1|Name=mRNA_M-pyrifera_M_contig108712.1831.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=381bp|location=Sequence derived from alignment at M-pyrifera_M_contig108712:87..467- (Macrocystis pyrifera P11B4 male)
CACAACATGGAGGAGGCCGACGTGCTGTGCAACCGGATCGGCATCATGGC ACGAGGTCAGCTCATTTGCATTGGATCTCAGGCACACCTGAAGAAGAAGT TCGGAACTGGCTTCACCGTGCAGGTCATGAGTGACGACCACCACAAGTCC CACGACTTCATTCTTTCCATCTTCCCCACTGCCGTGCAGGACATGGACTC CTCGATGAGCGGCCTTCTGTGCTACCGCATTCCCCAGAACACGGAGCTCG ACCTCGTTGGCCTCTTCACGGCCATGAAGGATCGCGCTGTGTACGGCATC AAGGAGTGGTCTATCCAGCAGACTACACTGGAAGAGGTGTTCCTCAAGGT GTTCGAGTTCGAAGAAGCCGCCACGGACTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108712:87..467-

>mRNA_M-pyrifera_M_contig108712.1831.1 ID=mRNA_M-pyrifera_M_contig108712.1831.1|Name=mRNA_M-pyrifera_M_contig108712.1831.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=750bp|location=Sequence derived from alignment at M-pyrifera_M_contig108712:87..467- (Macrocystis pyrifera P11B4 male)
ATGGAGGAGGCCGACGTGCTGTGCAACCGGATCGGCATCATGGCACGAGG
TCAGCTCATTTGCATTGGATCTCAGGCACACCTGAAGAAGAAGTTCGGAA
CTGGCTTCACCGTGCAGGTCATGAGTGACGACCACCACAAGTCCCACGAC
TTCATTCTTTCCATCTTCCCCACTGCCGTGCAGGACATGGACTCCTCGAT
GAGCGGCCTTCTGTGCTACCGCATTCCCCAGAACACGGAGCTCGACCTCG
TTGGCCTCTTCACGGCCATGAAGGATCGCGCTGTGTACGGCATCAAGGAG
TGGTCTATCCAGCAGACTACACTGGAAGAGGTGTTCCTCAAGGTGTTCGA
GTTCGAAGAAGCCGCCACGGACTAGATGGAGGAGGCCGACGTGCTGTGCA
ACCGGATCGGCATCATGGCACGAGGTCAGCTCATTTGCATTGGATCTCAG
GCACACCTGAAGAAGAAGTTCGGAACTGGCTTCACCGTGCAGGTCATGAG
TGACGACCACCACAAGTCCCACGACTTCATTCTTTCCATCTTCCCCACTG
CCGTGCAGGACATGGACTCCTCGATGAGCGGCCTTCTGTGCTACCGCATT
CCCCAGAACACGGAGCTCGACCTCGTTGGCCTCTTCACGGCCATGAAGGA
TCGCGCTGTGTACGGCATCAAGGAGTGGTCTATCCAGCAGACTACACTGG
AAGAGGTGTTCCTCAAGGTGTTCGAGTTCGAAGAAGCCGCCACGGACTAG
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