mRNA_M-pyrifera_M_contig108651.1826.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108651.1826.1
Unique NamemRNA_M-pyrifera_M_contig108651.1826.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig108651.1826.1 vs. uniprot
Match: A9VDX2_MONBE (Alpha-L-fucosidase n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9VDX2_MONBE)

HSP 1 Score: 102 bits (254), Expect = 3.190e-22
Identity = 56/152 (36.84%), Postives = 78/152 (51.32%), Query Frame = 1
Query:   55 LPIPSKEQLEQMDKPFSLFLHFSIATFTGRDDPC-DPSCPHASLFAPKEA-------INTDNWAETAVAMGASEMCLTAHHGAGFAMWRTNLTDYGVKESRWSGDVVGSMYASARKFGLGACLYFDLADAYHEGRGENASANLARQVSFLKE 486
            +P PS  QLE MD   + F+HFS+ TF   +  C D SC  AS+F P            TD W +TAV MGA E+CLTAHH  GF +W +N ++Y V +S +  D+V    AS  K+ +  C Y           G NA+    + +++  E
Sbjct:  116 IPRPSVRQLEYMDMGLTQFMHFSVTTFGNIEHDCVDGSCLPASIFNPTAMGPDENGLTATDQWVQTAVDMGAGEICLTAHHEGGFCLWPSNYSNYTVMQSPYPHDIVADFVASCHKYNIRPCFYI----------GPNANGYFTQVLNYTAE 257          
BLAST of mRNA_M-pyrifera_M_contig108651.1826.1 vs. uniprot
Match: F2U618_SALR5 (Alpha-L-fucosidase n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U618_SALR5)

HSP 1 Score: 97.8 bits (242), Expect = 1.350e-20
Identity = 58/166 (34.94%), Postives = 82/166 (49.40%), Query Frame = 1
Query:   37 YTMAIDLPIPSKEQLEQMDKPFSLFLHFSIATFTGRDDPC-DPSCPHASLFAPKEA-------INTDNWAETAVAMGASEMCLTAHHGAGFAMWRTNLTDYGVKESRWSGDVVGSMYASARKFGLGACLYFDL-ADAYH-EGRGENASANLARQVSFLKELLTERG 504
            Y     +P PSK Q E MD   + F+HFS+ TF   +  C D SC   SLF P            TD W + A AMGA E+CLTAHH  GF +W +  ++Y V +S    D+V +   S RK+ +  C Y    A+ Y  +         +  Q+  ++E+LT+ G
Sbjct:  131 YEPPATIPRPSKRQQEYMDMGLTQFMHFSVTTFGNIEHDCVDGSCLPPSLFNPTHMGPDAHGITATDQWVQAAKAMGAGEICLTAHHEGGFCLWPSKFSNYTVMQSPHKHDIVEAFVKSCRKYDVRPCFYIGPNANGYFTQVLNYTTEQFVTAQLGMIREVLTKYG 296          
BLAST of mRNA_M-pyrifera_M_contig108651.1826.1 vs. uniprot
Match: A0A7W8E1G9_9BACT (Alpha-L-fucosidase n=1 Tax=Granulicella aggregans TaxID=474949 RepID=A0A7W8E1G9_9BACT)

HSP 1 Score: 83.2 bits (204), Expect = 1.720e-15
Identity = 53/152 (34.87%), Postives = 82/152 (53.95%), Query Frame = 1
Query:   61 IPSKEQLEQMDKPFSLFLHFSIATFTGRDDPCDPSCPHASLFAPKEAINTDNWAETAVAMGASEMCLTAHHGAGFAMWRTNLTDYGVKESRW---SGDVVGSMYASARKFGLGACLYFDLADAYHEGR--GENASANLARQVSFL-KELLTE 498
            +PS +Q+   D    +F+HF+  T+  +D   D      S+  PK  ++TD WA TAVA+GA  +   A H  GF MW+T+ TDY ++ + W    GDV+  + AS RKFGL   +Y    D +   +  G  A+  L ++ + + +E LTE
Sbjct:   35 LPSPDQIAWQDLEVGMFVHFAPNTW--QDVESDNLSTPLSVIDPKH-LDTDQWARTAVALGAKYIVFVAKHQGGFCMWQTHTTDYSIRNTPWRDGKGDVLADVAASCRKFGLKLGVYVCPRDDHFGAKTGGICATPELQQRYNAMYREQLTE 183          
BLAST of mRNA_M-pyrifera_M_contig108651.1826.1 vs. uniprot
Match: A0A3P1T2S7_9ACTN (Alpha-L-fucosidase n=1 Tax=Arachnia propionica TaxID=1750 RepID=A0A3P1T2S7_9ACTN)

HSP 1 Score: 82.0 bits (201), Expect = 3.480e-15
Identity = 59/158 (37.34%), Postives = 79/158 (50.00%), Query Frame = 1
Query:   43 MAIDLPIPSKEQLEQMDKPFSLFLHFSIATFTGRDDPCDPSCPHASLFAPKEAINTDNWAETAVAMGASEMCLTAHHGAGFAMWRTNLTDYGVKESRW---SGDVVGSMYASARKFGLGACLYFDLADAYHEGRGENASANLARQVSFLKELLTERGE 507
            M  + P+P+ +QL        +FLHF I TF G +   D + P A  F P  A++ D WAETA A+GA    LTA H  GF +W+T+ T Y V  S W    GDVV     + R+ G+   LY    D  + G   +A+A     V  L EL T  G+
Sbjct:    1 MTDNHPMPTPQQLAWQRMRLGVFLHFGINTFFGAEW-SDGTLP-AEAFDPS-ALDADQWAETAQAIGARYAVLTAKHHDGFCLWQTDTTSYSVASSPWRDGKGDVVEEFVTAFRRRGIAVGLYLSPWDR-NAGCYPDAAAYDEFYVRQLTELCTRYGD 154          
BLAST of mRNA_M-pyrifera_M_contig108651.1826.1 vs. uniprot
Match: A0A851GG45_9BACT (Alpha-L-fucosidase n=1 Tax=Oceaniferula marina TaxID=2748318 RepID=A0A851GG45_9BACT)

HSP 1 Score: 78.6 bits (192), Expect = 6.630e-14
Identity = 53/158 (33.54%), Postives = 79/158 (50.00%), Query Frame = 1
Query:   64 PSKEQLEQMDKPFSLFLHFSIATFTGRDDPCDPSCPHASLFAPKEAINTDNWAETAVAMGASEMCLTAHHGAGFAMWRTNLTDYGVKESRWSGDVVGSMYASARKFGLGACLYFDLADA-YHEGRGENASANLARQVSF---------LKELLTERGE 507
            P+  Q + +++ + +F+HF I T++G++       P   ++ P E ++TD WA+TA   G + + L   H  GF +W +  T Y V  S    DVV SM AS +K+GL   LY+ L D  +  G   +  A L  Q S          L ELLT  GE
Sbjct:   31 PNAYQKQMINRSYGMFIHFGINTYSGKEWTDGTLSP--DIYQP-EKLDTDQWAKTAKDAGMTYVILVTKHHEGFCLWDSKHTTYDVASSSVKTDVVKSMAASCKKYGLNLGLYYSLWDRNWGNGVMRSNRATLTPQQSDDYVTYMNSQLTELLTRYGE 185          
BLAST of mRNA_M-pyrifera_M_contig108651.1826.1 vs. uniprot
Match: A0A1I6LEF9_9BACT (Alpha-L-fucosidase n=1 Tax=Granulicella pectinivorans TaxID=474950 RepID=A0A1I6LEF9_9BACT)

HSP 1 Score: 78.6 bits (192), Expect = 6.970e-14
Identity = 44/125 (35.20%), Postives = 69/125 (55.20%), Query Frame = 1
Query:   37 YTMAIDLPIPSKEQLEQMDKPFSLFLHFSIATFTGRDDPCDPSCPHASLFAPKEAINTDNWAETAVAMGASEMCLTAHHGAGFAMWRTNLTDYGVKESRWS---GDVVGSMYASARKFGLGACLY 402
            +  A  L  PSK+Q+   D    +F+HF+  T+   +   D S P +++   K  ++TD WA TA+ +GA  +   A H  GF MW+T+ TDYG++ + W    GDV+  + AS  K+GL   +Y
Sbjct:   26 FAAAPVLARPSKQQIAWADLEIGMFVHFAPNTWQDLESD-DLSTPLSAINPVK--LDTDQWARTALELGAKYIVFVAKHQGGFCMWQTHTTDYGIRNTPWKDGKGDVLAEVRASCDKYGLKLGVY 147          
BLAST of mRNA_M-pyrifera_M_contig108651.1826.1 vs. uniprot
Match: A0A7W5NUT6_9GAMM (Alpha-L-fucosidase n=6 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A7W5NUT6_9GAMM)

HSP 1 Score: 78.2 bits (191), Expect = 9.230e-14
Identity = 56/156 (35.90%), Postives = 73/156 (46.79%), Query Frame = 1
Query:   46 AIDLPIPSKEQLEQMDKPFSLFLHFSIATFTGRDDPCDPSCPHASLFAPKEAINTDNWAETAVAMGASEMCLTAHHGAGFAMWRTNLTDYGVKESRW---SGDVVGSMYASARKFGLGACLYFDLADAYHEGRGENASANLARQVSFLKELLTERG 504
            A   P PS  QL    +  S+F+HF++ TFTGR+       P  ++F PK A++   WA TA A G   M LTA H  GF +W T  T + V  S W    GD+V     + R  GLG   Y    D      GE  + +    +  L ELLT  G
Sbjct:   46 AAPRPRPSAAQLAWQREELSMFVHFTVNTFTGREWGDGSESP--AIFDPK-ALDARQWARTAKASGFRSMILTAKHHDGFCLWPTKTTTHSVASSPWRGGKGDLVREFTDACRAEGLGVGFYLSPWDRNARVYGEGKAYD-DFYIQQLTELLTGYG 197          
BLAST of mRNA_M-pyrifera_M_contig108651.1826.1 vs. uniprot
Match: A0A2L0SHW2_9GAMM (Alpha-L-fucosidase n=1 Tax=Stenotrophomonas acidaminiphila TaxID=128780 RepID=A0A2L0SHW2_9GAMM)

HSP 1 Score: 77.0 bits (188), Expect = 2.330e-13
Identity = 58/156 (37.18%), Postives = 72/156 (46.15%), Query Frame = 1
Query:   58 PIPSKEQLEQMDKPFSLFLHFSIATFTGRDDPCDPSCPHASLFAPKEAINTDNWAETAVAMGASEMCLTAHHGAGFAMWRTNLTDYGVKESRW---SGDVVGSMYASARKFGLGACLYFDLAD----AYHEGRGENASANLARQVSFLKELLTERG 504
            P P   QL    +  S+F+HFSI TFTGR+       P   LFAP  A++   WA TA A G   M LTA H  GF +W T  T + V  S W   +GD+V     + R  GLG   Y    D     Y +GR  +        +  L ELLT  G
Sbjct:   47 PRPDAAQLAWQREELSMFVHFSINTFTGREWGDGRESPR--LFAPA-ALDARQWARTARACGFGSMILTAKHHDGFCLWPTATTAHSVASSPWRGGNGDLVREFTDACRAEGLGVGFYLSPWDRNAAVYGQGRAYDDF-----YIEQLSELLTGYG 194          
BLAST of mRNA_M-pyrifera_M_contig108651.1826.1 vs. uniprot
Match: A0A6N7K5S0_9GAMM (Alpha-L-fucosidase n=1 Tax=Stenotrophomonas sp. MYb238 TaxID=2040281 RepID=A0A6N7K5S0_9GAMM)

HSP 1 Score: 75.9 bits (185), Expect = 5.880e-13
Identity = 56/156 (35.90%), Postives = 72/156 (46.15%), Query Frame = 1
Query:   58 PIPSKEQLEQMDKPFSLFLHFSIATFTGRDDPCDPSCPHASLFAPKEAINTDNWAETAVAMGASEMCLTAHHGAGFAMWRTNLTDYGVKESRW---SGDVVGSMYASARKFGLGACLYFDLADA----YHEGRGENASANLARQVSFLKELLTERG 504
            P PS  QL    +  S+F+HFS+ TFTGR+       P   +F P  A++   WA TA A G + M LTA H  GF +W T  T + V  S W    GD+V     + R  GLG   Y    D     Y EG+  +        +  L ELLT  G
Sbjct:   46 PRPSAAQLAWQREELSMFVHFSVNTFTGREWGDGSESPQ--VFNPT-ALDARQWARTARACGFASMILTAKHHDGFCLWPTKTTAHSVASSPWRGGKGDLVREFTDACRAEGLGVGFYLSPWDRNAAIYGEGKAYDDF-----YIEQLAELLTSYG 193          
BLAST of mRNA_M-pyrifera_M_contig108651.1826.1 vs. uniprot
Match: A0A7D8BCN4_9BACT (Alpha-L-fucosidase n=1 Tax=Granulicella sp. 5B5 TaxID=1617967 RepID=A0A7D8BCN4_9BACT)

HSP 1 Score: 75.9 bits (185), Expect = 6.050e-13
Identity = 51/153 (33.33%), Postives = 76/153 (49.67%), Query Frame = 1
Query:   61 IPSKEQLEQMDKPFSLFLHFSIATFTGRDDPCDPSCPHASLFAPKEAINTDNWAETAVAMGASEMCLTAHHGAGFAMWRTNLTDYGVKESRWS---GDVVGSMYASARKFGLGACLYFDLADAYHEGRGENASANL----ARQVSFLKELLTE 498
            +PS ++    D    +F+HF+  T+  +D   D      S   PK  ++TD WA+TAVA+GA  +   A H  GF MW+T  T+Y ++ + W    GDV+  + AS RK+GL   +Y    D  H G G           A+  +  +E LTE
Sbjct:   36 LPSAKERAWQDLEVGMFVHFAPNTW--QDVESDNLSTPLSEIDPKN-LSTDQWAQTAVALGARYIVFVAKHQGGFCMWQTKTTEYSIRNTPWKDGKGDVLREVEASCRKYGLKLGVYVCPRDD-HFGAGTGGVCKTLELQAKYDAMYREQLTE 184          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108651.1826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A9VDX2_MONBE3.190e-2236.84Alpha-L-fucosidase n=1 Tax=Monosiga brevicollis Ta... [more]
F2U618_SALR51.350e-2034.94Alpha-L-fucosidase n=1 Tax=Salpingoeca rosetta (st... [more]
A0A7W8E1G9_9BACT1.720e-1534.87Alpha-L-fucosidase n=1 Tax=Granulicella aggregans ... [more]
A0A3P1T2S7_9ACTN3.480e-1537.34Alpha-L-fucosidase n=1 Tax=Arachnia propionica Tax... [more]
A0A851GG45_9BACT6.630e-1433.54Alpha-L-fucosidase n=1 Tax=Oceaniferula marina Tax... [more]
A0A1I6LEF9_9BACT6.970e-1435.20Alpha-L-fucosidase n=1 Tax=Granulicella pectinivor... [more]
A0A7W5NUT6_9GAMM9.230e-1435.90Alpha-L-fucosidase n=6 Tax=Gammaproteobacteria Tax... [more]
A0A2L0SHW2_9GAMM2.330e-1337.18Alpha-L-fucosidase n=1 Tax=Stenotrophomonas acidam... [more]
A0A6N7K5S0_9GAMM5.880e-1335.90Alpha-L-fucosidase n=1 Tax=Stenotrophomonas sp. MY... [more]
A0A7D8BCN4_9BACT6.050e-1333.33Alpha-L-fucosidase n=1 Tax=Granulicella sp. 5B5 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108651contigM-pyrifera_M_contig108651:15..521 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score100.5
Seed ortholog evalue7.8e-19
Seed eggNOG ortholog81824.XP_001750923.1
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Alpha-L-fucosidase
EggNOG OGs3A5J7@33154,COG3669@1,KOG3340@2759
COG Functional cat.G
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size507
Cds size507
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815596.6048346-CDS-M-pyrifera_M_contig108651:14..5211622815596.6048346-CDS-M-pyrifera_M_contig108651:14..521Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108651 15..521 -
1692277480.0915926-CDS-M-pyrifera_M_contig108651:14..5211692277480.0915926-CDS-M-pyrifera_M_contig108651:14..521Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108651 15..521 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108651.1826.1prot_M-pyrifera_M_contig108651.1826.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108651 15..521 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108651.1826.1

>prot_M-pyrifera_M_contig108651.1826.1 ID=prot_M-pyrifera_M_contig108651.1826.1|Name=mRNA_M-pyrifera_M_contig108651.1826.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=169bp
VWCLVLCIARTTYTMAIDLPIPSKEQLEQMDKPFSLFLHFSIATFTGRDD
PCDPSCPHASLFAPKEAINTDNWAETAVAMGASEMCLTAHHGAGFAMWRT
NLTDYGVKESRWSGDVVGSMYASARKFGLGACLYFDLADAYHEGRGENAS
ANLARQVSFLKELLTERGE
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mRNA from alignment at M-pyrifera_M_contig108651:15..521-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108651.1826.1 ID=mRNA_M-pyrifera_M_contig108651.1826.1|Name=mRNA_M-pyrifera_M_contig108651.1826.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=507bp|location=Sequence derived from alignment at M-pyrifera_M_contig108651:15..521- (Macrocystis pyrifera P11B4 male)
GTGTGGTGTTTGGTATTATGTATTGCGAGAACGACTTACACAATGGCCAT AGATCTTCCTATTCCAAGCAAGGAGCAACTTGAGCAGATGGACAAGCCTT TTTCCCTATTTCTCCACTTCTCTATTGCTACTTTCACGGGAAGGGATGAC CCATGTGATCCATCATGTCCACATGCTTCGTTGTTTGCTCCGAAAGAAGC AATCAATACCGATAATTGGGCAGAAACTGCGGTTGCAATGGGTGCATCAG AAATGTGCCTTACAGCACATCATGGTGCAGGGTTTGCAATGTGGAGGACA AATTTGACGGATTATGGAGTGAAGGAGAGTCGATGGAGTGGAGATGTGGT AGGAAGTATGTATGCAAGTGCTCGGAAATTTGGATTGGGTGCTTGTTTGT ATTTTGACTTGGCGGATGCATATCATGAGGGACGAGGGGAGAATGCGAGT GCAAATCTTGCACGTCAAGTGTCATTTTTGAAAGAATTGTTGACGGAACG AGGAGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108651:15..521-

>mRNA_M-pyrifera_M_contig108651.1826.1 ID=mRNA_M-pyrifera_M_contig108651.1826.1|Name=mRNA_M-pyrifera_M_contig108651.1826.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1014bp|location=Sequence derived from alignment at M-pyrifera_M_contig108651:15..521- (Macrocystis pyrifera P11B4 male)
GTGTGGTGTTTGGTATTATGTATTGCGAGAACGACTTACACAATGGCCAT
AGATCTTCCTATTCCAAGCAAGGAGCAACTTGAGCAGATGGACAAGCCTT
TTTCCCTATTTCTCCACTTCTCTATTGCTACTTTCACGGGAAGGGATGAC
CCATGTGATCCATCATGTCCACATGCTTCGTTGTTTGCTCCGAAAGAAGC
AATCAATACCGATAATTGGGCAGAAACTGCGGTTGCAATGGGTGCATCAG
AAATGTGCCTTACAGCACATCATGGTGCAGGGTTTGCAATGTGGAGGACA
AATTTGACGGATTATGGAGTGAAGGAGAGTCGATGGAGTGGAGATGTGGT
AGGAAGTATGTATGCAAGTGCTCGGAAATTTGGATTGGGTGCTTGTTTGT
ATTTTGACTTGGCGGATGCATATCATGAGGGACGAGGGGAGAATGCGAGT
GCAAATCTTGCACGTCAAGTGTCATTTTTGAAAGAATTGTTGACGGAACG
AGGAGAAGTGTGGTGTTTGGTATTATGTATTGCGAGAACGACTTACACAA
TGGCCATAGATCTTCCTATTCCAAGCAAGGAGCAACTTGAGCAGATGGAC
AAGCCTTTTTCCCTATTTCTCCACTTCTCTATTGCTACTTTCACGGGAAG
GGATGACCCATGTGATCCATCATGTCCACATGCTTCGTTGTTTGCTCCGA
AAGAAGCAATCAATACCGATAATTGGGCAGAAACTGCGGTTGCAATGGGT
GCATCAGAAATGTGCCTTACAGCACATCATGGTGCAGGGTTTGCAATGTG
GAGGACAAATTTGACGGATTATGGAGTGAAGGAGAGTCGATGGAGTGGAG
ATGTGGTAGGAAGTATGTATGCAAGTGCTCGGAAATTTGGATTGGGTGCT
TGTTTGTATTTTGACTTGGCGGATGCATATCATGAGGGACGAGGGGAGAA
TGCGAGTGCAAATCTTGCACGTCAAGTGTCATTTTTGAAAGAATTGTTGA
CGGAACGAGGAGAA
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