mRNA_M-pyrifera_M_contig108643.1824.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108643.1824.1
Unique NamemRNA_M-pyrifera_M_contig108643.1824.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig108643.1824.1 vs. uniprot
Match: A0A812ZEJ8_SYMMI (UBCRBP protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812ZEJ8_SYMMI)

HSP 1 Score: 91.7 bits (226), Expect = 4.550e-22
Identity = 43/75 (57.33%), Postives = 56/75 (74.67%), Query Frame = 1
Query:    1 GLFYHDIIAETPVLTRAISRLPAEVQERRIRRIRRAIDLGMKKQYLPEEAWEDPWQEFDMMRELLAVTQREHDER 225
            GL YHD++ ++P    AI+RLP E+QE R+RRIRRA+DL +KK  LPE  W DPW+EFD ++ LL  TQRE DE+
Sbjct:   20 GLCYHDVMVDSPAYKTAIARLPEEMQEARLRRIRRAVDLNVKKIVLPESQWVDPWREFDTVQNLLEYTQRELDEK 94          
BLAST of mRNA_M-pyrifera_M_contig108643.1824.1 vs. uniprot
Match: A0A5A8DRH0_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DRH0_CAFRO)

HSP 1 Score: 91.7 bits (226), Expect = 5.620e-22
Identity = 43/75 (57.33%), Postives = 56/75 (74.67%), Query Frame = 1
Query:    1 GLFYHDIIAETPVLTRAISRLPAEVQERRIRRIRRAIDLGMKKQYLPEEAWEDPWQEFDMMRELLAVTQREHDER 225
            GL YHD++ ++P    AI+RLP E+QE R+RRIRRA+DL +KK  LPE  W DPW+EFD ++ LL  TQRE DE+
Sbjct:   28 GLCYHDVMVDSPAYKTAIARLPEEMQEARLRRIRRAVDLNVKKIVLPESQWVDPWREFDTVQNLLEYTQRELDEK 102          
BLAST of mRNA_M-pyrifera_M_contig108643.1824.1 vs. uniprot
Match: A0A812KD07_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812KD07_9DINO)

HSP 1 Score: 93.2 bits (230), Expect = 1.570e-20
Identity = 43/75 (57.33%), Postives = 58/75 (77.33%), Query Frame = 1
Query:    1 GLFYHDIIAETPVLTRAISRLPAEVQERRIRRIRRAIDLGMKKQYLPEEAWEDPWQEFDMMRELLAVTQREHDER 225
            GL +HD++A+ P+L +A++RLP E+QERR RRIRRA DL +K +YLPE+ W DP+ EFDMM +L+   Q E DER
Sbjct:  359 GLMWHDVVADGPILDKAVARLPKEMQERRERRIRRAFDLSLKHKYLPEDKWVDPYAEFDMMDKLMKQVQIEEDER 433          
BLAST of mRNA_M-pyrifera_M_contig108643.1824.1 vs. uniprot
Match: A0A0G4IL57_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IL57_PLABS)

HSP 1 Score: 60.8 bits (146), Expect = 2.600e-10
Identity = 31/71 (43.66%), Postives = 48/71 (67.61%), Query Frame = 1
Query:    1 GLFYHDIIAETPVLTRAISRLPAEVQERRIRRIRRAIDLGMKKQYLPEEAWE-DPWQEFDMMRELLAVTQR 210
            GL + DI+ E   +  AI+RLP +V E R+RRIRRA DL +K +Y+PE   + DP++++ ++ EL+ V  R
Sbjct:   25 GLLFEDILLEREDIQEAIARLPPDVLEARVRRIRRAHDLSLKHEYMPEHLQDYDPFEKYGLIEELVNVRAR 95          
BLAST of mRNA_M-pyrifera_M_contig108643.1824.1 vs. uniprot
Match: A0A8B7P442_HYAAZ (Cytochrome b-c1 complex subunit 7 n=1 Tax=Hyalella azteca TaxID=294128 RepID=A0A8B7P442_HYAAZ)

HSP 1 Score: 57.4 bits (137), Expect = 7.590e-9
Identity = 31/75 (41.33%), Postives = 46/75 (61.33%), Query Frame = 1
Query:    1 GLFYHDIIAETPVLTRAISRLPAEVQERRIRRIRRAIDLGMKKQYLPEEAWEDPWQEFDMMRELLAVTQREHDER 225
            GL+ HD+  ETP ++ AI RLPAE Q+ R+ R++RAI L + K+ LP+E W    +E    R L  + ++   ER
Sbjct:   33 GLYLHDLYQETPDVSEAIRRLPAEKQDERLWRLQRAIQLDLTKRVLPKEEWHTYEEEISKGRYLTELLKQVEFER 107          
BLAST of mRNA_M-pyrifera_M_contig108643.1824.1 vs. uniprot
Match: UPI0004CD4A3E (cytochrome b-c1 complex subunit 7-like n=1 Tax=Microplitis demolitor TaxID=69319 RepID=UPI0004CD4A3E)

HSP 1 Score: 54.7 bits (130), Expect = 7.690e-8
Identity = 29/71 (40.85%), Postives = 43/71 (60.56%), Query Frame = 1
Query:    1 GLFYHDIIAETPVLTRAISRLPAEVQERRIRRIRRAIDLGMKKQYLPEEAWEDPWQEFDMMRELLAVTQRE 213
            GL + D++ ETP +T AI RLP ++Q+ RI RI RA+ L  +K  LP+E W    ++   +R  L   +RE
Sbjct:   31 GLMHDDVLQETPEVTEAIRRLPQDLQDARIFRIVRAMQLSCQKTILPKEQWTKYEEDVRYLRPYLEEVRRE 101          
BLAST of mRNA_M-pyrifera_M_contig108643.1824.1 vs. uniprot
Match: A0A822F4J7_9NEOB (Cytochrome b-c1 complex subunit 7 n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A822F4J7_9NEOB)

HSP 1 Score: 53.9 bits (128), Expect = 1.540e-7
Identity = 30/75 (40.00%), Postives = 44/75 (58.67%), Query Frame = 1
Query:    1 GLFYHDIIAETPVLTRAISRLPAEVQERRIRRIRRAIDLGMKKQYLPEEAWEDPWQEFDMMRELLAVTQREHDER 225
            GL   D + ETP +  AI RLPA+V + R+ RI+RA+DL MKK  LP+E W    ++   ++  +    RE  E+
Sbjct:   31 GLMRDDTLYETPDVQEAIRRLPAKVYDDRMFRIKRALDLDMKKNILPKEQWTKYEEDVSYLQPYIREVIRERKEK 105          
BLAST of mRNA_M-pyrifera_M_contig108643.1824.1 vs. uniprot
Match: UPI001ABDF04B (cytochrome b-c1 complex subunit 7 n=2 Tax=Bufo TaxID=8383 RepID=UPI001ABDF04B)

HSP 1 Score: 53.1 bits (126), Expect = 3.070e-7
Identity = 30/74 (40.54%), Postives = 42/74 (56.76%), Query Frame = 1
Query:    1 GLFYHDIIAETPVLTRAISRLPAEVQERRIRRIRRAIDLGMKKQYLPEEAWEDPWQEFDMMRELLAVTQREHDE 222
            GL   D I E P +  AI RLP ++ + R+ RI+RA+DL MKK  LP+E W    ++F  ++  L    RE  E
Sbjct:   31 GLMRDDTIYEDPDVQEAIKRLPPKLYDDRVFRIKRALDLDMKKSILPKEQWTKYEEDFPYLQPYLKEVLREKKE 104          
BLAST of mRNA_M-pyrifera_M_contig108643.1824.1 vs. uniprot
Match: A0A0D3A2L3_BRAOL (Cytochrome b-c1 complex subunit 7 n=8 Tax=Brassiceae TaxID=981071 RepID=A0A0D3A2L3_BRAOL)

HSP 1 Score: 52.8 bits (125), Expect = 5.420e-7
Identity = 33/79 (41.77%), Postives = 53/79 (67.09%), Query Frame = 1
Query:    1 GLFYHDIIA--ETPVLTRAISRLPAEVQERRIRRIRRAIDLGMKKQYLPEE--AWEDPWQEFDMMRELLAVTQREHDER 225
            GL Y D+    ET  +  A++RLP EV + R +R++RA+DL MK +YLPE+  A + P++ +  ++E+LA+ +RE  ER
Sbjct:   32 GLRYDDLFDQYETMDIKEALNRLPREVVDARNQRLKRAMDLSMKHEYLPEDLQAVQTPFRGY--LKEMLALVEREKKER 108          
BLAST of mRNA_M-pyrifera_M_contig108643.1824.1 vs. uniprot
Match: A0A8J6EZ33_ELECQ (Cytochrome b-c1 complex subunit 7 n=1 Tax=Eleutherodactylus coqui TaxID=57060 RepID=A0A8J6EZ33_ELECQ)

HSP 1 Score: 51.2 bits (121), Expect = 1.730e-6
Identity = 31/75 (41.33%), Postives = 42/75 (56.00%), Query Frame = 1
Query:    1 GLFYHDIIAETPVLTRAISRLPAEVQERRIRRIRRAIDLGMKKQYLPEEAWEDPWQEFDMMRELLAVTQREHDER 225
            GL   D + ET  +  AISRLPA + + RI RI+RA+DL MKK  LP++ W    ++   +   L    RE  ER
Sbjct:   31 GLMRDDTLYETNDVKEAISRLPARLYDDRIFRIKRALDLDMKKSILPKDQWTKYDEDVRYLEPYLKEVIRERKER 105          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108643.1824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812ZEJ8_SYMMI4.550e-2257.33UBCRBP protein n=1 Tax=Symbiodinium microadriaticu... [more]
A0A5A8DRH0_CAFRO5.620e-2257.33Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A812KD07_9DINO1.570e-2057.33Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A0G4IL57_PLABS2.600e-1043.66Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
A0A8B7P442_HYAAZ7.590e-941.33Cytochrome b-c1 complex subunit 7 n=1 Tax=Hyalella... [more]
UPI0004CD4A3E7.690e-840.85cytochrome b-c1 complex subunit 7-like n=1 Tax=Mic... [more]
A0A822F4J7_9NEOB1.540e-740.00Cytochrome b-c1 complex subunit 7 n=1 Tax=Ranitome... [more]
UPI001ABDF04B3.070e-740.54cytochrome b-c1 complex subunit 7 n=2 Tax=Bufo Tax... [more]
A0A0D3A2L3_BRAOL5.420e-741.77Cytochrome b-c1 complex subunit 7 n=8 Tax=Brassice... [more]
A0A8J6EZ33_ELECQ1.730e-641.33Cytochrome b-c1 complex subunit 7 n=1 Tax=Eleuther... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108643contigM-pyrifera_M_contig108643:93..317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size225
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815596.5408154-CDS-M-pyrifera_M_contig108643:92..3171622815596.5408154-CDS-M-pyrifera_M_contig108643:92..317Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108643 93..317 -
1692277480.0690706-CDS-M-pyrifera_M_contig108643:92..3171692277480.0690706-CDS-M-pyrifera_M_contig108643:92..317Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108643 93..317 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108643.1824.1prot_M-pyrifera_M_contig108643.1824.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108643 93..317 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108643.1824.1

>prot_M-pyrifera_M_contig108643.1824.1 ID=prot_M-pyrifera_M_contig108643.1824.1|Name=mRNA_M-pyrifera_M_contig108643.1824.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=75bp
GLFYHDIIAETPVLTRAISRLPAEVQERRIRRIRRAIDLGMKKQYLPEEA
WEDPWQEFDMMRELLAVTQREHDER
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mRNA from alignment at M-pyrifera_M_contig108643:93..317-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108643.1824.1 ID=mRNA_M-pyrifera_M_contig108643.1824.1|Name=mRNA_M-pyrifera_M_contig108643.1824.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=225bp|location=Sequence derived from alignment at M-pyrifera_M_contig108643:93..317- (Macrocystis pyrifera P11B4 male)
GGTTTGTTTTACCACGACATCATTGCTGAGACTCCCGTGTTGACTCGTGC GATCAGCCGTTTGCCCGCTGAGGTGCAGGAGCGTCGGATCCGTCGGATTC GCCGTGCGATCGACTTGGGCATGAAGAAGCAGTATTTGCCTGAGGAGGCT TGGGAGGACCCCTGGCAGGAGTTCGACATGATGCGGGAGCTGCTGGCCGT GACGCAGCGCGAGCACGACGAGCGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108643:93..317-

>mRNA_M-pyrifera_M_contig108643.1824.1 ID=mRNA_M-pyrifera_M_contig108643.1824.1|Name=mRNA_M-pyrifera_M_contig108643.1824.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig108643:93..317- (Macrocystis pyrifera P11B4 male)
GGTTTGTTTTACCACGACATCATTGCTGAGACTCCCGTGTTGACTCGTGC
GATCAGCCGTTTGCCCGCTGAGGTGCAGGAGCGTCGGATCCGTCGGATTC
GCCGTGCGATCGACTTGGGCATGAAGAAGCAGTATTTGCCTGAGGAGGCT
TGGGAGGACCCCTGGCAGGAGTTCGACATGATGCGGGAGCTGCTGGCCGT
GACGCAGCGCGAGCACGACGAGCGCGGTTTGTTTTACCACGACATCATTG
CTGAGACTCCCGTGTTGACTCGTGCGATCAGCCGTTTGCCCGCTGAGGTG
CAGGAGCGTCGGATCCGTCGGATTCGCCGTGCGATCGACTTGGGCATGAA
GAAGCAGTATTTGCCTGAGGAGGCTTGGGAGGACCCCTGGCAGGAGTTCG
ACATGATGCGGGAGCTGCTGGCCGTGACGCAGCGCGAGCACGACGAGCGC
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