mRNA_M-pyrifera_M_contig108617.1818.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108617.1818.1
Unique NamemRNA_M-pyrifera_M_contig108617.1818.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig108617.1818.1 vs. uniprot
Match: A0A2G5B664_COERN (CBF-domain-containing protein (Fragment) n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5B664_COERN)

HSP 1 Score: 89.7 bits (221), Expect = 3.450e-18
Identity = 53/142 (37.32%), Postives = 74/142 (52.11%), Query Frame = 1
Query:    1 AFAKRLARLALSSPPAVALVVMPLIFNLIKSHPSITPLIHREPEFKPPTLLGGGGEEGEGVVGSSSXXXXXXXXXXXXXXXXXXXXSSEDPRKCGALESSLWELVALRHHFHPVVSARAALFERDLSRPSFSMARFSAESYA 426
            AF KR++RLALS+PPA A+ V+P+++NL+K HPS   LIHR P +          E GE VV                           DP KC A++SSLWEL  L+HH++P ++  A +F     +P F +  F   +YA
Sbjct:  368 AFIKRMSRLALSAPPAGAVTVIPMVYNLLKDHPSCMVLIHRMPGYNE--------ETGEEVVTGDCDPFDS---------------EESDPAKCQAMKSSLWELETLQHHYYPNIATLAKVFNEPFHKPKFMLEDFLDHTYA 486          
BLAST of mRNA_M-pyrifera_M_contig108617.1818.1 vs. uniprot
Match: A0A7S1CDG6_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CDG6_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.310e-17
Identity = 54/141 (38.30%), Postives = 86/141 (60.99%), Query Frame = 1
Query:    1 AFAKRLARLALSSPPAVALVVMPLIFNLIKSHPSITPLIHREPEFKPPTLLGGGGEEGEGVVGSSSXXXXXXXXXXXXXXXXXXXXSSEDPRKCGALESSLWELVALRHHFHPVVSARAALFERDLSRPSFSMARFSAESY 423
            AF KR+ARL+LSSPPAVA+  +P ++NL+K HP+   ++HR+ +       GG   + E   G++ XXXXX                 +D +KC AL+SSLWE+ AL HH+ P V++ A++F+  +++  +++  FSA +Y
Sbjct:  362 AFIKRIARLSLSSPPAVAIFAVPFMYNLLKRHPACVSMVHRDEDEPKTAAEGGVASDSEDEGGAAXXXXXXTDGPGNDPFIE----DEDDMKKCKALDSSLWEVDALLHHYTPAVASLASVFKTKMNKVPYTVDDFSAYTY 498          
BLAST of mRNA_M-pyrifera_M_contig108617.1818.1 vs. uniprot
Match: A0A8H7ZNW9_9FUNG (CBF/Mak21 family-domain-containing protein n=1 Tax=Olpidium bornovanus TaxID=278681 RepID=A0A8H7ZNW9_9FUNG)

HSP 1 Score: 82.4 bits (202), Expect = 7.300e-17
Identity = 52/142 (36.62%), Postives = 77/142 (54.23%), Query Frame = 1
Query:    1 AFAKRLARLALSSPPAVALVVMPLIFNLIKSHPSITPLIHREPEFKPPTLLGGGGEEGEGVVGSSSXXXXXXXXXXXXXXXXXXXXSSEDPRKCGALESSLWELVALRHHFHPVVSARAALFERDLSRPSFSMARFSAESYA 426
            AF KRLARL+L++PPA  +V+M L++NL+K HP++  LIHR      P   G   E+ E    +                         +P +C AL+SSLWELV+LR H+ P VS+ A +FE   ++P +++  F   +YA
Sbjct:   29 AFVKRLARLSLAAPPAADVVIMALVYNLLKRHPTLMKLIHR------PQKGGLFAEDTECTEYAGGPDPYDP--------------QERNPAQCRALDSSLWELVSLRSHYAPNVSSLAKMFEEKFNKPGYALEDFLDHTYA 150          
BLAST of mRNA_M-pyrifera_M_contig108617.1818.1 vs. uniprot
Match: H2RYU0_TAKRU (CBF domain-containing protein n=3 Tax=Takifugu rubripes TaxID=31033 RepID=H2RYU0_TAKRU)

HSP 1 Score: 85.5 bits (210), Expect = 1.120e-16
Identity = 53/126 (42.06%), Postives = 64/126 (50.79%), Query Frame = 1
Query:    1 AFAKRLARLALSSPPAVALVVMPLIFNLIKSHPSITPLIHREPEFKPPTLLGGGGEEGEGVVGSSSXXXXXXXXXXXXXXXXXXXXSSEDPRKCGALESSLWELVALRHHFHPVVSARAALFERDL 378
            AFAKRLARLAL++PP   L+ +P I+NLI+ HPS+  L+HR  E           EEGE  V                          EDP +CGALESSLWE+  L+ H HP VS  A L    L
Sbjct:  373 AFAKRLARLALTAPPTGLLIALPFIYNLIRRHPSVRVLLHRPSE-----------EEGESTV------------------VDPYVMEEEDPAQCGALESSLWEIKTLQKHHHPDVSKAAGLINTPL 469          
BLAST of mRNA_M-pyrifera_M_contig108617.1818.1 vs. uniprot
Match: A0A139APE5_GONPJ (CBF-domain-containing protein n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139APE5_GONPJ)

HSP 1 Score: 82.8 bits (203), Expect = 1.530e-16
Identity = 55/138 (39.86%), Postives = 67/138 (48.55%), Query Frame = 1
Query:    1 AFAKRLARLALSSPPAVALVVMPLIFNLIKSHPSITPLIHREPEFKPP--TLLGGGGEEGEGVVGSSSXXXXXXXXXXXXXXXXXXXXSSEDPRKCGALESSLWELVALRHHFHPVVSARAALFERDLSRPSFSMARF 408
            AFAKRL+RL L++PPA  + V+PLI NL+K HP+   LIHR  E        L   G  G G                          + EDP KC AL SSLWE+ +LR H+ PVV   A  FE  L R  F +  F
Sbjct:   77 AFAKRLSRLLLTAPPAATVAVLPLIHNLLKRHPACLVLIHRSDEQVSQWRAALVAAGASGSGFP-------------------DPYDHAEEDPAKCNALMSSLWEVASLRGHYLPVVKGLARAFEDRLGREEFQVEEF 195          
BLAST of mRNA_M-pyrifera_M_contig108617.1818.1 vs. uniprot
Match: A0A3N4KFQ1_9PEZI (CBF-domain-containing protein n=3 Tax=Morchella TaxID=5193 RepID=A0A3N4KFQ1_9PEZI)

HSP 1 Score: 81.6 bits (200), Expect = 2.560e-15
Identity = 51/141 (36.17%), Postives = 69/141 (48.94%), Query Frame = 1
Query:    4 FAKRLARLALSSPPAVALVVMPLIFNLIKSHPSITPLIHREPEFKPPTLLGGGGEEGEGVVGSSSXXXXXXXXXXXXXXXXXXXXSSEDPRKCGALESSLWELVALRHHFHPVVSARAALFERDLSRPSFSMARFSAESYA 426
            F KR+ARLALS+PPA  ++V+P ++NL+K HPS T ++HRE          G  EE EG                            EDP K GA+ESSLWE+  L  H+HP V   A +     ++  + +  F   SYA
Sbjct:  391 FVKRMARLALSAPPAAVVIVVPFVYNLLKRHPSCTFMVHRE----------GSAEEREG--------------WRKEGLTDVFEEREEDPMKTGAIESSLWEIEMLMAHWHPNVGTLARIIGEQFTKEKYILEDFLDHSYA 507          
BLAST of mRNA_M-pyrifera_M_contig108617.1818.1 vs. uniprot
Match: A0A086TK94_9FUNG (CBF domain-containing protein n=1 Tax=Podila verticillata NRRL 6337 TaxID=1069443 RepID=A0A086TK94_9FUNG)

HSP 1 Score: 81.3 bits (199), Expect = 3.520e-15
Identity = 50/142 (35.21%), Postives = 72/142 (50.70%), Query Frame = 1
Query:    1 AFAKRLARLALSSPPAVALVVMPLIFNLIKSHPSITPLIHREPEFKPPTLLGGGGEEGEGVVGSSSXXXXXXXXXXXXXXXXXXXXSSEDPRKCGALESSLWELVALRHHFHPVVSARAALFERDLSRPSFSMARFSAESYA 426
            AF KR+ARLALSSPPA  ++++P I+NL+K HP+   LIH                      GS++                      +DP KC AL+SSLWE+  L++HF P VS  A +F    ++PS+++  F   +YA
Sbjct:  427 AFIKRMARLALSSPPASIVIIIPFIYNLLKRHPTCMQLIH----------------------GSATSEENDSYNHL-----------EDDPMKCNALQSSLWEMQTLQNHFAPNVSTLAKIFNEQFTKPSYNLEDFLDHTYA 535          
BLAST of mRNA_M-pyrifera_M_contig108617.1818.1 vs. uniprot
Match: UPI0009E1F039 (nucleolar complex protein 4 homolog n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E1F039)

HSP 1 Score: 80.5 bits (197), Expect = 6.360e-15
Identity = 50/141 (35.46%), Postives = 74/141 (52.48%), Query Frame = 1
Query:    1 AFAKRLARLALSSPPAVALVVMPLIFNLIKSHPSITPLIHREPEFKPPTLLGGGGEEGEGVVGSSSXXXXXXXXXXXXXXXXXXXXSSEDPRKCGALESSLWELVALRHHFHPVVSARAALFERDLSRPSFSMARFSAESY 423
            AF KRL+RLALS+PP+ A++V+P + NLIK HPS+  LIHR+   K   LL  G +E    +                          +DP KC A++SSLWEL  L+ HF+P V++   + E+ L      ++ +  + Y
Sbjct:  367 AFVKRLSRLALSAPPSGAMLVIPFVCNLIKRHPSVQVLIHRKQRGK--LLLDEGTDESTTSLCQGDPFIA----------------DEQDPAKCDAMKSSLWELKTLQSHFYPTVASLVEMLEKPLGAEETDISEYFDQGY 489          
BLAST of mRNA_M-pyrifera_M_contig108617.1818.1 vs. uniprot
Match: A0A8J6A9U5_GALPY (Nucleolar complex protein 4 n=1 Tax=Galemys pyrenaicus TaxID=202257 RepID=A0A8J6A9U5_GALPY)

HSP 1 Score: 80.5 bits (197), Expect = 6.420e-15
Identity = 55/134 (41.04%), Postives = 70/134 (52.24%), Query Frame = 1
Query:    1 AFAKRLARLALSSPPAVALVVMPLIFNLIKSHPSITPLIHREPEFKPPTLLGGGGEEGEGVVGSSSXXXXXXXXXXXXXXXXXXXXSSEDPRKCGALESSLWELVALRHHFHPVVSARAALFERDLSRPSFSMA 402
            AFAKRLARLAL++PP   L+V+P I NL++ HP+   LIHR    + P L     + GE                             EDP K  ALESSLWEL AL+HH+HP VS  A++  + LS P   +A
Sbjct:  396 AFAKRLARLALTAPPEALLMVLPFICNLLRRHPACRVLIHRP---QGPELDADPYDPGE-----------------------------EDPAKSHALESSLWELKALQHHYHPEVSQAASVINQALSVPEVPIA 497          
BLAST of mRNA_M-pyrifera_M_contig108617.1818.1 vs. uniprot
Match: A0A1Y1YJQ7_9FUNG (CBF-domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YJQ7_9FUNG)

HSP 1 Score: 79.3 bits (194), Expect = 1.610e-14
Identity = 47/141 (33.33%), Postives = 72/141 (51.06%), Query Frame = 1
Query:    1 AFAKRLARLALSSPPAVALVVMPLIFNLIKSHPSITPLIHREPEFKPPTLLGGGGEEGEGVVGSSSXXXXXXXXXXXXXXXXXXXXSSEDPRKCGALESSLWELVALRHHFHPVVSARAALFERDLSRPSFSMARFSAESY 423
            AF KRLARL+LS+PPA  ++++P+I+NL+K HPS   LIHR P+ +  T                                     S  DP +  A++SSLWE+  L+ H+ P VS+ A +F    ++PS+++  F   +Y
Sbjct:  376 AFVKRLARLSLSAPPAGIIIIIPIIYNLLKRHPSTMVLIHRGPDDQVETA-----------------------------EADPYCFSEADPLESNAMQSSLWEIETLKDHYFPNVSSLAKIFSEKFNKPSYNLEDFLDHTY 487          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108617.1818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2G5B664_COERN3.450e-1837.32CBF-domain-containing protein (Fragment) n=1 Tax=C... [more]
A0A7S1CDG6_9STRA1.310e-1738.30Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A8H7ZNW9_9FUNG7.300e-1736.62CBF/Mak21 family-domain-containing protein n=1 Tax... [more]
H2RYU0_TAKRU1.120e-1642.06CBF domain-containing protein n=3 Tax=Takifugu rub... [more]
A0A139APE5_GONPJ1.530e-1639.86CBF-domain-containing protein n=1 Tax=Gonapodya pr... [more]
A0A3N4KFQ1_9PEZI2.560e-1536.17CBF-domain-containing protein n=3 Tax=Morchella Ta... [more]
A0A086TK94_9FUNG3.520e-1535.21CBF domain-containing protein n=1 Tax=Podila verti... [more]
UPI0009E1F0396.360e-1535.46nucleolar complex protein 4 homolog n=1 Tax=Orbice... [more]
A0A8J6A9U5_GALPY6.420e-1541.04Nucleolar complex protein 4 n=1 Tax=Galemys pyrena... [more]
A0A1Y1YJQ7_9FUNG1.610e-1433.33CBF-domain-containing protein n=1 Tax=Basidiobolus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108617contigM-pyrifera_M_contig108617:3..428 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score83.2
Seed ortholog evalue1.1e-13
Seed eggNOG ortholog38727.Pavir.Ga00791.1.p
KEGG koko:K05387,ko:K14771
KEGG TC1.A.10.1.10,1.A.10.1.18,1.A.10.1.7
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.CBF/Mak21 family
EggNOG OGs37ICE@33090,3GEQG@35493,3IB77@38820,3KTRA@4447,KOG2154@1,KOG2154@2759
COG Functional cat.J
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko04040
Exons1
Model size426
Cds size426
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815596.1595442-CDS-M-pyrifera_M_contig108617:2..4281622815596.1595442-CDS-M-pyrifera_M_contig108617:2..428Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108617 3..428 +
1692277479.8737555-CDS-M-pyrifera_M_contig108617:2..4281692277479.8737555-CDS-M-pyrifera_M_contig108617:2..428Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108617 3..428 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108617.1818.1prot_M-pyrifera_M_contig108617.1818.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108617 3..428 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108617.1818.1

>prot_M-pyrifera_M_contig108617.1818.1 ID=prot_M-pyrifera_M_contig108617.1818.1|Name=mRNA_M-pyrifera_M_contig108617.1818.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=142bp
AFAKRLARLALSSPPAVALVVMPLIFNLIKSHPSITPLIHREPEFKPPTL
LGGGGEEGEGVVGSSSASSASSATSSSSTSFDPFDPSSEDPRKCGALESS
LWELVALRHHFHPVVSARAALFERDLSRPSFSMARFSAESYA
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mRNA from alignment at M-pyrifera_M_contig108617:3..428+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108617.1818.1 ID=mRNA_M-pyrifera_M_contig108617.1818.1|Name=mRNA_M-pyrifera_M_contig108617.1818.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig108617:3..428+ (Macrocystis pyrifera P11B4 male)
GCATTTGCCAAGAGATTAGCACGCTTGGCACTTTCAAGCCCACCAGCTGT TGCTCTTGTCGTCATGCCTCTCATCTTCAATCTCATCAAATCACACCCAT CAATCACACCTCTCATCCATCGTGAACCTGAATTCAAACCCCCCACACTC CTTGGAGGAGGAGGAGAAGAAGGGGAAGGGGTGGTGGGTTCATCTTCTGC ATCTTCTGCATCTTCTGCAACATCGTCATCATCGACTTCATTTGATCCTT TTGATCCAAGCAGTGAGGATCCTCGCAAGTGTGGAGCACTGGAGTCTAGT TTGTGGGAGTTGGTGGCATTACGACATCATTTCCACCCTGTGGTATCTGC GCGAGCTGCATTGTTTGAACGAGACTTGTCACGTCCATCTTTTTCAATGG CTCGTTTTTCAGCTGAATCATATGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108617:3..428+

>mRNA_M-pyrifera_M_contig108617.1818.1 ID=mRNA_M-pyrifera_M_contig108617.1818.1|Name=mRNA_M-pyrifera_M_contig108617.1818.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=852bp|location=Sequence derived from alignment at M-pyrifera_M_contig108617:3..428+ (Macrocystis pyrifera P11B4 male)
GCATTTGCCAAGAGATTAGCACGCTTGGCACTTTCAAGCCCACCAGCTGT
TGCTCTTGTCGTCATGCCTCTCATCTTCAATCTCATCAAATCACACCCAT
CAATCACACCTCTCATCCATCGTGAACCTGAATTCAAACCCCCCACACTC
CTTGGAGGAGGAGGAGAAGAAGGGGAAGGGGTGGTGGGTTCATCTTCTGC
ATCTTCTGCATCTTCTGCAACATCGTCATCATCGACTTCATTTGATCCTT
TTGATCCAAGCAGTGAGGATCCTCGCAAGTGTGGAGCACTGGAGTCTAGT
TTGTGGGAGTTGGTGGCATTACGACATCATTTCCACCCTGTGGTATCTGC
GCGAGCTGCATTGTTTGAACGAGACTTGTCACGTCCATCTTTTTCAATGG
CTCGTTTTTCAGCTGAATCATATGCGGCATTTGCCAAGAGATTAGCACGC
TTGGCACTTTCAAGCCCACCAGCTGTTGCTCTTGTCGTCATGCCTCTCAT
CTTCAATCTCATCAAATCACACCCATCAATCACACCTCTCATCCATCGTG
AACCTGAATTCAAACCCCCCACACTCCTTGGAGGAGGAGGAGAAGAAGGG
GAAGGGGTGGTGGGTTCATCTTCTGCATCTTCTGCATCTTCTGCAACATC
GTCATCATCGACTTCATTTGATCCTTTTGATCCAAGCAGTGAGGATCCTC
GCAAGTGTGGAGCACTGGAGTCTAGTTTGTGGGAGTTGGTGGCATTACGA
CATCATTTCCACCCTGTGGTATCTGCGCGAGCTGCATTGTTTGAACGAGA
CTTGTCACGTCCATCTTTTTCAATGGCTCGTTTTTCAGCTGAATCATATG
CG
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