mRNA_M-pyrifera_M_contig108616.1817.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108616.1817.1
Unique NamemRNA_M-pyrifera_M_contig108616.1817.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig108616.1817.1 vs. uniprot
Match: E0XR38_9GAMM (Uncharacterized protein n=1 Tax=uncultured gamma proteobacterium HF0010_16J05 TaxID=710981 RepID=E0XR38_9GAMM)

HSP 1 Score: 46.6 bits (109), Expect = 1.980e-5
Identity = 20/25 (80.00%), Postives = 21/25 (84.00%), Query Frame = 3 
Query:   96 GGIPERPKGPDCKSGGYAFAGSNPA 170
            GGIPER KG DCKS GYAF GSNP+
Sbjct:   12 GGIPERSKGSDCKSDGYAFEGSNPS 36
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BLAST of mRNA_M-pyrifera_M_contig108616.1817.1 vs. uniprot
Match: A0A0K2AWJ4_STRA7 (Uncharacterized protein n=1 Tax=Streptomyces ambofaciens (strain ATCC 23877 / 3486 / DSM 40053 / JCM 4204 / NBRC 12836 / NRRL B-2516) TaxID=278992 RepID=A0A0K2AWJ4_STRA7)

HSP 1 Score: 46.2 bits (108), Expect = 4.460e-5
Identity = 19/26 (73.08%), Postives = 21/26 (80.77%), Query Frame = 3 
Query:   96 GGIPERPKGPDCKSGGYAFAGSNPAS 173
            GG+PERPKG DCKS G AF GSNP +
Sbjct:   35 GGVPERPKGADCKSAGSAFPGSNPGA 60
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BLAST of mRNA_M-pyrifera_M_contig108616.1817.1 vs. uniprot
Match: A0A1T4ZL23_9CYAN (Uncharacterized protein n=1 Tax=Planktothrix sp. PCC 11201 TaxID=1729650 RepID=A0A1T4ZL23_9CYAN)

HSP 1 Score: 45.8 bits (107), Expect = 4.640e-5
Identity = 20/31 (64.52%), Postives = 22/31 (70.97%), Query Frame = 3 
Query:  102 IPERPKGPDCKSGGYAFAGSNPASPIQKNWK 194
            +PER  G DCKS GYA+AGSNPA P  K  K
Sbjct:    1 MPERLMGADCKSAGYAYAGSNPARPTSKTQK 31
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108616.1817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
E0XR38_9GAMM1.980e-580.00Uncharacterized protein n=1 Tax=uncultured gamma p... [more]
A0A0K2AWJ4_STRA74.460e-573.08Uncharacterized protein n=1 Tax=Streptomyces ambof... [more]
A0A1T4ZL23_9CYAN4.640e-564.52Uncharacterized protein n=1 Tax=Planktothrix sp. P... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108616contigM-pyrifera_M_contig108616:161..423 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size201
Cds size201
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815596.1135833-CDS-M-pyrifera_M_contig108616:160..2821622815596.1135833-CDS-M-pyrifera_M_contig108616:160..282Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108616 161..282 -
1692277479.851944-CDS-M-pyrifera_M_contig108616:160..2821692277479.851944-CDS-M-pyrifera_M_contig108616:160..282Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108616 161..282 -
1622815596.1233094-CDS-M-pyrifera_M_contig108616:344..4231622815596.1233094-CDS-M-pyrifera_M_contig108616:344..423Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108616 345..423 -
1692277479.8616679-CDS-M-pyrifera_M_contig108616:344..4231692277479.8616679-CDS-M-pyrifera_M_contig108616:344..423Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108616 345..423 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108616.1817.1prot_M-pyrifera_M_contig108616.1817.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108616 161..423 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108616.1817.1

>prot_M-pyrifera_M_contig108616.1817.1 ID=prot_M-pyrifera_M_contig108616.1817.1|Name=mRNA_M-pyrifera_M_contig108616.1817.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=67bp
ASVAQSAEHRFCKPKVVGSIPTASSFTSAGWEGEFPSGQRGQTVNLVATP
SQVRILLPPFKRIGSD*
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mRNA from alignment at M-pyrifera_M_contig108616:161..423-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108616.1817.1 ID=mRNA_M-pyrifera_M_contig108616.1817.1|Name=mRNA_M-pyrifera_M_contig108616.1817.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=263bp|location=Sequence derived from alignment at M-pyrifera_M_contig108616:161..423- (Macrocystis pyrifera P11B4 male)
GCTAGCGTAGCTCAATCGGCAGAGCATCGGTTTTGTAAACCGAAGGTTGT
GGGTTCGATTCCCACCGCTAGCTCTTTTAGTTGCGATTTGAGGCAGTTTT
ATTATTTAAATTGTTGCCAGATTACAACTTGTGACTTCCAGCTTCGGCTG
GTTGGGAGGGGGAATTCCCGAGCGGCCAAAGGGGCCAGACTGTAAATCTG
GTGGCTACGCCTTCGCAGGTTCGAATCCTGCTTCCCCCATTCAAAAGAAT
TGGAAGTGACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108616:161..423-

>mRNA_M-pyrifera_M_contig108616.1817.1 ID=mRNA_M-pyrifera_M_contig108616.1817.1|Name=mRNA_M-pyrifera_M_contig108616.1817.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig108616:161..423- (Macrocystis pyrifera P11B4 male)
GCTAGCGTAGCTCAATCGGCAGAGCATCGGTTTTGTAAACCGAAGGTTGT
GGGTTCGATTCCCACCGCTAGCTCTTTTAGCTAGCGTAGCTCAATCGGCA
GAGCATCGGTTTTGTAAACCGAAGGTTGTGGGTTCGATTCCCACCGCTAG
CTCTTTTACTTCGGCTGGTTGGGAGGGGGAATTCCCGAGCGGCCAAAGGG
GCCAGACTGTAAATCTGGTGGCTACGCCTTCGCAGGTTCGAATCCTGCTT
CCCCCATTCAAAAGAATTGGAAGTGACTGACTTCGGCTGGTTGGGAGGGG
GAATTCCCGAGCGGCCAAAGGGGCCAGACTGTAAATCTGGTGGCTACGCC
TTCGCAGGTTCGAATCCTGCTTCCCCCATTCAAAAGAATTGGAAGTGACT
GA
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