mRNA_M-pyrifera_M_contig108614.1816.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108614.1816.1
Unique NamemRNA_M-pyrifera_M_contig108614.1816.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig108614.1816.1 vs. uniprot
Match: A0A521ZBK4_9BURK (Ankyrin repeat domain-containing protein n=1 Tax=Burkholderiaceae bacterium TaxID=2030806 RepID=A0A521ZBK4_9BURK)

HSP 1 Score: 52.0 bits (123), Expect = 8.800e-6
Identity = 23/43 (53.49%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    4 VRALVQSGIDVNKAGKNGSTPLTLACDDGHVDVVKLLLDAGAD 132
            V+ LV SG+DVNK G+ G TPL  AC++G+ ++V+ LLD+GA+
Sbjct:   55 VKLLVASGVDVNKHGEQGYTPLHYACEEGNSEMVQFLLDSGAN 97
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BLAST of mRNA_M-pyrifera_M_contig108614.1816.1 vs. uniprot
Match: A0A7S2AWV2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AWV2_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 1.790e-5
Identity = 26/54 (48.15%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:    1 LVRALVQSGIDVNKAGKNGSTPLTLACDDGHVDVVKLLLDAGADDGSTLNATYG 162
            + + LV+SG  VN A  +G+ PL  A  DGH+D+VKLL+DAGA+     N T G
Sbjct:    5 VAKILVRSGAKVNMARHDGTYPLWFAAQDGHLDIVKLLVDAGANMELNTNITGG 58
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BLAST of mRNA_M-pyrifera_M_contig108614.1816.1 vs. uniprot
Match: A0A4Y7TLS4_9AGAR (Ankyrin n=1 Tax=Coprinellus micaceus TaxID=71717 RepID=A0A4Y7TLS4_9AGAR)

HSP 1 Score: 51.2 bits (121), Expect = 2.050e-5
Identity = 23/39 (58.97%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:   16 VQSGIDVNKAGKNGSTPLTLACDDGHVDVVKLLLDAGAD 132
            + S +D+N+  + G TPL LACD GH+DVVKLLL+ GAD
Sbjct:  112 LNSNLDINEKDQYGYTPLHLACDRGHLDVVKLLLEKGAD 150
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BLAST of mRNA_M-pyrifera_M_contig108614.1816.1 vs. uniprot
Match: A0A5Q0GTR8_SACSY (Uncharacterized protein n=1 Tax=Saccharothrix syringae TaxID=103733 RepID=A0A5Q0GTR8_SACSY)

HSP 1 Score: 51.6 bits (122), Expect = 3.320e-5
Identity = 26/53 (49.06%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    4 VRALVQSGIDVNKAGKNGSTPLTLACDDGHVDVVKLLLDAGADDGSTLNATYG 162
            VR L+++G+D+N  G +G TPL +A   G+ D+V+LLLDAGAD  +T +A  G
Sbjct:   21 VRGLLRNGVDLNWRGSDGLTPLMVAAGKGNADLVRLLLDAGADVYTTDSAAGG 73
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BLAST of mRNA_M-pyrifera_M_contig108614.1816.1 vs. uniprot
Match: UPI0009FE1E30 (ankyrin repeat domain-containing protein n=1 Tax=Saccharothrix sp. ALI-22-I TaxID=1933778 RepID=UPI0009FE1E30)

HSP 1 Score: 51.2 bits (121), Expect = 4.540e-5
Identity = 23/43 (53.49%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    4 VRALVQSGIDVNKAGKNGSTPLTLACDDGHVDVVKLLLDAGAD 132
            VR L+++G+DVN  G +G TPL +A   G  D+V+LL+DAGAD
Sbjct:   21 VRGLLRNGVDVNARGADGLTPLMIAAGKGSADLVRLLIDAGAD 63
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BLAST of mRNA_M-pyrifera_M_contig108614.1816.1 vs. uniprot
Match: UPI002007CCC3 (ankyrin repeat-containing domain protein n=1 Tax=Antrodia serialis TaxID=139415 RepID=UPI002007CCC3)

HSP 1 Score: 50.4 bits (119), Expect = 4.810e-5
Identity = 23/35 (65.71%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:   28 IDVNKAGKNGSTPLTLACDDGHVDVVKLLLDAGAD 132
            +DVN   +NG TPL LACD GH DVV+LLL+ GAD
Sbjct:  133 VDVNVKDENGYTPLHLACDRGHADVVRLLLERGAD 167
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BLAST of mRNA_M-pyrifera_M_contig108614.1816.1 vs. uniprot
Match: A0A1I0NHV5_9RHOB (Ankyrin repeat n=1 Tax=Cognatiyoonia koreensis TaxID=364200 RepID=A0A1I0NHV5_9RHOB)

HSP 1 Score: 50.8 bits (120), Expect = 6.680e-5
Identity = 24/49 (48.98%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:   13 LVQSGIDVNKAGKNGSTPLTLACDDGHVDVVKLLLDAGADDGSTLNATY 159
            L+  G DVN A  +G+TPL LA + GHVD+V+LLL++GA   +T++A++
Sbjct:  185 LLSKGADVNAASPDGATPLFLAIEAGHVDLVELLLNSGASLEATMDASF 233
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BLAST of mRNA_M-pyrifera_M_contig108614.1816.1 vs. uniprot
Match: A0A6S8VUD1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8VUD1_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 7.250e-5
Identity = 24/53 (45.28%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:   13 LVQSGIDVNKAGKNGSTPLTLACDDGHVDVVKLLLDAGA----DDGSTLNATY 159
            ++  G +V++A KNG TPL +AC++GHV+  +LLL+ GA    DD S   A Y
Sbjct:    1 MLDKGAEVDRANKNGRTPLYIACEEGHVEAARLLLERGAAVPRDDESLDGAEY 53
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BLAST of mRNA_M-pyrifera_M_contig108614.1816.1 vs. uniprot
Match: A0A392QSP5_9FABA (Potassium channel AKT1-like (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392QSP5_9FABA)

HSP 1 Score: 47.8 bits (112), Expect = 8.400e-5
Identity = 21/44 (47.73%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    1 LVRALVQSGIDVNKAGKNGSTPLTLACDDGHVDVVKLLLDAGAD 132
            L+  L++ G+DV K+ KNG+T L  A  +G+V++VKLL+D GA+
Sbjct:   39 LLMELIEFGVDVTKSDKNGTTALHTAVSEGNVEIVKLLVDLGAE 82
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BLAST of mRNA_M-pyrifera_M_contig108614.1816.1 vs. uniprot
Match: A0A812WSU0_SYMPI (Ank2 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812WSU0_SYMPI)

HSP 1 Score: 50.4 bits (119), Expect = 8.530e-5
Identity = 24/46 (52.17%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 LVRALVQSGIDVNKAGK-NGSTPLTLACDDGHVDVVKLLLDAGADD 135
            +VR L+++G DV+KA    G TPL  AC+ GHV++ ++LL+AGADD
Sbjct:  241 VVRLLLKAGADVDKAPTATGYTPLFRACEQGHVEIARMLLEAGADD 286
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108614.1816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A521ZBK4_9BURK8.800e-653.49Ankyrin repeat domain-containing protein n=1 Tax=B... [more]
A0A7S2AWV2_9STRA1.790e-548.15Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A4Y7TLS4_9AGAR2.050e-558.97Ankyrin n=1 Tax=Coprinellus micaceus TaxID=71717 R... [more]
A0A5Q0GTR8_SACSY3.320e-549.06Uncharacterized protein n=1 Tax=Saccharothrix syri... [more]
UPI0009FE1E304.540e-553.49ankyrin repeat domain-containing protein n=1 Tax=S... [more]
UPI002007CCC34.810e-565.71ankyrin repeat-containing domain protein n=1 Tax=A... [more]
A0A1I0NHV5_9RHOB6.680e-548.98Ankyrin repeat n=1 Tax=Cognatiyoonia koreensis Tax... [more]
A0A6S8VUD1_9STRA7.250e-545.28Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A392QSP5_9FABA8.400e-547.73Potassium channel AKT1-like (Fragment) n=1 Tax=Tri... [more]
A0A812WSU0_SYMPI8.530e-552.17Ank2 protein n=1 Tax=Symbiodinium pilosum TaxID=29... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108614contigM-pyrifera_M_contig108614:55..522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size351
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815596.0705419-CDS-M-pyrifera_M_contig108614:54..2731622815596.0705419-CDS-M-pyrifera_M_contig108614:54..273Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108614 55..273 -
1692277479.831805-CDS-M-pyrifera_M_contig108614:54..2731692277479.831805-CDS-M-pyrifera_M_contig108614:54..273Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108614 55..273 -
1622815596.082874-CDS-M-pyrifera_M_contig108614:390..5221622815596.082874-CDS-M-pyrifera_M_contig108614:390..522Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108614 391..522 -
1692277479.8419883-CDS-M-pyrifera_M_contig108614:390..5221692277479.8419883-CDS-M-pyrifera_M_contig108614:390..522Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108614 391..522 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108614.1816.1prot_M-pyrifera_M_contig108614.1816.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108614 55..522 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108614.1816.1

>prot_M-pyrifera_M_contig108614.1816.1 ID=prot_M-pyrifera_M_contig108614.1816.1|Name=mRNA_M-pyrifera_M_contig108614.1816.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=117bp
LVRALVQSGIDVNKAGKNGSTPLTLACDDGHVDVVKLLLDAGADDGSTLN
ATYGGKSLLHVASERGRVEVVKLLLDAGADVNKTSTFGGTPSTLASDGGH
VDVVKLLLDAGADVSKN
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mRNA from alignment at M-pyrifera_M_contig108614:55..522-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108614.1816.1 ID=mRNA_M-pyrifera_M_contig108614.1816.1|Name=mRNA_M-pyrifera_M_contig108614.1816.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig108614:55..522- (Macrocystis pyrifera P11B4 male)
CTGGTGAGAGCTCTTGTGCAAAGTGGTATCGATGTGAACAAGGCAGGCAA
GAACGGGAGCACACCACTGACATTGGCTTGTGATGATGGTCATGTTGATG
TGGTGAAGCTTCTGTTGGATGCTGGAGCAGATGTTCACGATGTTTCCCAT
GCAGCGAATCCTGCCGTGGAACGCCTCCTGAGTATGGCTAGACAAGTACT
TGAAGCAGTGAAAGATGGAGCATTGACCAAGCTGCAGAGTTTGATTGAGG
ATGGATCCACTTTGAACGCCACATATGGTGGCAAGTCCTTACTTCATGTG
GCTTCTGAGCGTGGTCGTGTTGAAGTGGTGAAGCTTCTGTTGGATGCTGG
AGCAGATGTGAACAAAACAAGCACCTTCGGTGGTACACCATCGACATTAG
CTTCTGATGGTGGTCATGTTGATGTGGTGAAGCTTCTGTTGGATGCTGGA
GCAGATGTGAGCAAGAAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108614:55..522-

>mRNA_M-pyrifera_M_contig108614.1816.1 ID=mRNA_M-pyrifera_M_contig108614.1816.1|Name=mRNA_M-pyrifera_M_contig108614.1816.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=702bp|location=Sequence derived from alignment at M-pyrifera_M_contig108614:55..522- (Macrocystis pyrifera P11B4 male)
CTGGTGAGAGCTCTTGTGCAAAGTGGTATCGATGTGAACAAGGCAGGCAA
GAACGGGAGCACACCACTGACATTGGCTTGTGATGATGGTCATGTTGATG
TGGTGAAGCTTCTGTTGGATGCTGGAGCAGATCTGGTGAGAGCTCTTGTG
CAAAGTGGTATCGATGTGAACAAGGCAGGCAAGAACGGGAGCACACCACT
GACATTGGCTTGTGATGATGGTCATGTTGATGTGGTGAAGCTTCTGTTGG
ATGCTGGAGCAGATGATGGATCCACTTTGAACGCCACATATGGTGGCAAG
TCCTTACTTCATGTGGCTTCTGAGCGTGGTCGTGTTGAAGTGGTGAAGCT
TCTGTTGGATGCTGGAGCAGATGTGAACAAAACAAGCACCTTCGGTGGTA
CACCATCGACATTAGCTTCTGATGGTGGTCATGTTGATGTGGTGAAGCTT
CTGTTGGATGCTGGAGCAGATGTGAGCAAGAATGATGGATCCACTTTGAA
CGCCACATATGGTGGCAAGTCCTTACTTCATGTGGCTTCTGAGCGTGGTC
GTGTTGAAGTGGTGAAGCTTCTGTTGGATGCTGGAGCAGATGTGAACAAA
ACAAGCACCTTCGGTGGTACACCATCGACATTAGCTTCTGATGGTGGTCA
TGTTGATGTGGTGAAGCTTCTGTTGGATGCTGGAGCAGATGTGAGCAAGA
AT
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