mRNA_M-pyrifera_M_contig108613.1815.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108613.1815.1
Unique NamemRNA_M-pyrifera_M_contig108613.1815.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig108613.1815.1 vs. uniprot
Match: A0A517WIA9_9PLAN (Arylsulfatase n=6 Tax=Gimesia TaxID=1649453 RepID=A0A517WIA9_9PLAN)

HSP 1 Score: 418 bits (1074), Expect = 2.160e-143
Identity = 202/203 (99.51%), Postives = 203/203 (100.00%), Query Frame = 1
Query:    1 EKVQIPPYYPDHPVTRAVWAQYLNTVMAVDKKVAFILDLLKRDQLDKNTIVVFMADHGRAMPRGKQWPYDSGLHIPLIIYWPEGNSDLPAPAQYHRGEKSDQLISSIDLSATTLALAGIEKPSRMQGQVFLGSQTEKPRSYLFGGRDRGDETVFHIRTVRDKQFRYLRNKYPERPFLQINRYKETQYPIIGLLRDLHAKGELS 609
            EKVQIPPYYPDHPVTRAVWAQYLNTVMAVDKKVAFILDLLKRDQLDKNTIVVFMADHGRAMPRGKQWPYDSGLHIPLIIYWPEGNSDLPAPAQYHRGEKSDQLISSIDLSATTLALAGIEKPSRMQGQVFLGSQTEKPR+YLFGGRDRGDETVFHIRTVRDKQFRYLRNKYPERPFLQINRYKETQYPIIGLLRDLHAKGELS
Sbjct:  203 EKVQIPPYYPDHPVTRAVWAQYLNTVMAVDKKVAFILDLLKRDQLDKNTIVVFMADHGRAMPRGKQWPYDSGLHIPLIIYWPEGNSDLPAPAQYHRGEKSDQLISSIDLSATTLALAGIEKPSRMQGQVFLGSQTEKPRNYLFGGRDRGDETVFHIRTVRDKQFRYLRNKYPERPFLQINRYKETQYPIIGLLRDLHAKGELS 405          
BLAST of mRNA_M-pyrifera_M_contig108613.1815.1 vs. uniprot
Match: A0A518ABR1_9PLAN (Arylsulfatase n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518ABR1_9PLAN)

HSP 1 Score: 392 bits (1006), Expect = 4.370e-133
Identity = 183/202 (90.59%), Postives = 196/202 (97.03%), Query Frame = 1
Query:    4 KVQIPPYYPDHPVTRAVWAQYLNTVMAVDKKVAFILDLLKRDQLDKNTIVVFMADHGRAMPRGKQWPYDSGLHIPLIIYWPEGNSDLPAPAQYHRGEKSDQLISSIDLSATTLALAGIEKPSRMQGQVFLGSQTEKPRSYLFGGRDRGDETVFHIRTVRDKQFRYLRNKYPERPFLQINRYKETQYPIIGLLRDLHAKGELS 609
            KVQIPPYYPDHPVTRAVWAQYLNTVMAVDKKVAFILDLLKRD+LDKNTI+VF+ DHGRAMPRGKQWPYDSGLHIPLI+YWPEGN+DLPAPA + RGEKSDQLISSIDLSATTLALAG++KP++MQGQ+FLGS  E PR+YLFGGRDRGDETVFHIRTVRDKQ+RYLRNKYPERPFLQINRYKETQYPIIGLLRDLHAKGELS
Sbjct:  204 KVQIPPYYPDHPVTRAVWAQYLNTVMAVDKKVAFILDLLKRDKLDKNTIIVFLGDHGRAMPRGKQWPYDSGLHIPLIVYWPEGNADLPAPAHFQRGEKSDQLISSIDLSATTLALAGVDKPAKMQGQIFLGSHAEPPRTYLFGGRDRGDETVFHIRTVRDKQYRYLRNKYPERPFLQINRYKETQYPIIGLLRDLHAKGELS 405          
BLAST of mRNA_M-pyrifera_M_contig108613.1815.1 vs. uniprot
Match: A0A517RKY0_9PLAN (Arylsulfatase n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RKY0_9PLAN)

HSP 1 Score: 372 bits (956), Expect = 1.620e-125
Identity = 175/202 (86.63%), Postives = 189/202 (93.56%), Query Frame = 1
Query:    4 KVQIPPYYPDHPVTRAVWAQYLNTVMAVDKKVAFILDLLKRDQLDKNTIVVFMADHGRAMPRGKQWPYDSGLHIPLIIYWPEGNSDLPAPAQYHRGEKSDQLISSIDLSATTLALAGIEKPSRMQGQVFLGSQTEKPRSYLFGGRDRGDETVFHIRTVRDKQFRYLRNKYPERPFLQINRYKETQYPIIGLLRDLHAKGELS 609
            KV+IPPYYPDHPVTR VWAQYLN VMAVDKKVAFILDLLKRD+LDKNTIV+F+ DHGRAMPRGKQWPYDSGLHIPLIIYWPEGN  LPAPA Y RGEKS+QLISSIDLSATTLALAG+ KP +MQGQVFLG+Q E PR+Y+FGGRDRGDETVFHIRTVRDK+FRYLRNKYPE PFLQINRYKETQYPIIGLLR LHA+G+L+
Sbjct:  204 KVKIPPYYPDHPVTRGVWAQYLNAVMAVDKKVAFILDLLKRDKLDKNTIVIFLGDHGRAMPRGKQWPYDSGLHIPLIIYWPEGNDTLPAPAHYTRGEKSEQLISSIDLSATTLALAGVTKPEKMQGQVFLGTQAEPPRTYVFGGRDRGDETVFHIRTVRDKRFRYLRNKYPEHPFLQINRYKETQYPIIGLLRHLHAEGKLT 405          
BLAST of mRNA_M-pyrifera_M_contig108613.1815.1 vs. uniprot
Match: A0A517VJ78_9PLAN (Arylsulfatase n=12 Tax=Planctomycetaceae TaxID=126 RepID=A0A517VJ78_9PLAN)

HSP 1 Score: 359 bits (921), Expect = 3.200e-120
Identity = 170/201 (84.58%), Postives = 184/201 (91.54%), Query Frame = 1
Query:    4 KVQIPPYYPDHPVTRAVWAQYLNTVMAVDKKVAFILDLLKRDQLDKNTIVVFMADHGRAMPRGKQWPYDSGLHIPLIIYWPEGNSDLPAPAQYHRGEKSDQLISSIDLSATTLALAGIEKPSRMQGQVFLGSQTEKPRSYLFGGRDRGDETVFHIRTVRDKQFRYLRNKYPERPFLQINRYKETQYPIIGLLRDLHAKGEL 606
            KV+IPPYYPDH VTR VWAQYLN VMAVDKKVAFI+DLLKRD+LDKNTIVVF+ DHGRAMPRGKQWPYDSGLHIPLIIYWPEGNS LP PA Y RG+KS+QLISSIDLSAT+LA+AGI KP +MQGQVFLG+Q E PR  LFGGRDRGDETVF+IRTVRDKQ+RYLRNKYPERPFLQINRYKE  YPIIGLLRDL ++GEL
Sbjct:  204 KVEIPPYYPDHAVTRGVWAQYLNAVMAVDKKVAFIMDLLKRDKLDKNTIVVFLGDHGRAMPRGKQWPYDSGLHIPLIIYWPEGNSALPVPAHYQRGQKSEQLISSIDLSATSLAVAGITKPEKMQGQVFLGAQAEPPRECLFGGRDRGDETVFNIRTVRDKQYRYLRNKYPERPFLQINRYKEKSYPIIGLLRDLQSRGEL 404          
BLAST of mRNA_M-pyrifera_M_contig108613.1815.1 vs. uniprot
Match: A0A517WXY8_9PLAN (Arylsulfatase n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WXY8_9PLAN)

HSP 1 Score: 358 bits (918), Expect = 8.560e-120
Identity = 167/202 (82.67%), Postives = 187/202 (92.57%), Query Frame = 1
Query:    4 KVQIPPYYPDHPVTRAVWAQYLNTVMAVDKKVAFILDLLKRDQLDKNTIVVFMADHGRAMPRGKQWPYDSGLHIPLIIYWPEGNSDLPAPAQYHRGEKSDQLISSIDLSATTLALAGIEKPSRMQGQVFLGSQTEKPRSYLFGGRDRGDETVFHIRTVRDKQFRYLRNKYPERPFLQINRYKETQYPIIGLLRDLHAKGELS 609
            KV+IP YYP+HPVTRAVWAQYLN VMAVDKKVAFILDLLKRDQLDKNTIV+F+ DHGRAMPRGKQWPYDSGLHIPLI+YWPE NS LP PA Y RGE+S+QLIS+IDLSATTLALAG+ KP +MQGQVFLGSQ+E PR+YLF GRDRGDETVFHIRTVR+K++RYLR+KYPERPFLQINRYKE  YPIIGLLR LH++G+L+
Sbjct:  204 KVKIPDYYPEHPVTRAVWAQYLNAVMAVDKKVAFILDLLKRDQLDKNTIVIFLGDHGRAMPRGKQWPYDSGLHIPLIVYWPENNSALPVPANYKRGEQSEQLISAIDLSATTLALAGVTKPEKMQGQVFLGSQSEPPRTYLFSGRDRGDETVFHIRTVRNKRYRYLRSKYPERPFLQINRYKEASYPIIGLLRHLHSEGKLT 405          
BLAST of mRNA_M-pyrifera_M_contig108613.1815.1 vs. uniprot
Match: A0A518IHU9_9PLAN (Arylsulfatase n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518IHU9_9PLAN)

HSP 1 Score: 351 bits (901), Expect = 3.590e-117
Identity = 164/202 (81.19%), Postives = 180/202 (89.11%), Query Frame = 1
Query:    4 KVQIPPYYPDHPVTRAVWAQYLNTVMAVDKKVAFILDLLKRDQLDKNTIVVFMADHGRAMPRGKQWPYDSGLHIPLIIYWPEGNSDLPAPAQYHRGEKSDQLISSIDLSATTLALAGIEKPSRMQGQVFLGSQTEKPRSYLFGGRDRGDETVFHIRTVRDKQFRYLRNKYPERPFLQINRYKETQYPIIGLLRDLHAKGELS 609
            KV+IPPYYPDHPVTR VWAQYLN VMAVDKKVAFILDLLKRD+LDKNTIV+F  DHGRAMPRGKQWPYDSGLHIPLIIYWPEGN  LP PA Y RG  +DQLISSIDL+ATTL  AGI KP +MQG+VFLG+ +E PR YL+GGRDRGDETVFHIRTVRD+++RYLRNKYPE PFLQINRYKET YPIIGLLR LH +G+L+
Sbjct:  204 KVRIPPYYPDHPVTRGVWAQYLNAVMAVDKKVAFILDLLKRDKLDKNTIVIFFGDHGRAMPRGKQWPYDSGLHIPLIIYWPEGNEFLPTPANYKRGVITDQLISSIDLTATTLGFAGIRKPEKMQGEVFLGTYSEPPRKYLYGGRDRGDETVFHIRTVRDRRYRYLRNKYPEHPFLQINRYKETSYPIIGLLRHLHEEGKLT 405          
BLAST of mRNA_M-pyrifera_M_contig108613.1815.1 vs. uniprot
Match: A0A5Q3L9M8_9BACT (Arylsulfatase A n=1 Tax=Planctomycetales bacterium 10988 TaxID=2603660 RepID=A0A5Q3L9M8_9BACT)

HSP 1 Score: 333 bits (853), Expect = 6.770e-110
Identity = 155/203 (76.35%), Postives = 176/203 (86.70%), Query Frame = 1
Query:    1 EKVQIPPYYPDHPVTRAVWAQYLNTVMAVDKKVAFILDLLKRDQLDKNTIVVFMADHGRAMPRGKQWPYDSGLHIPLIIYWPEGNSDLPAPAQYHRGEKSDQLISSIDLSATTLALAGIEKPSRMQGQVFLGSQTEKPRSYLFGGRDRGDETVFHIRTVRDKQFRYLRNKYPERPFLQINRYKETQYPIIGLLRDLHAKGELS 609
            E++++PPYYPDHPV+RAVWAQYLNTVMA DKKV +ILDLLKRD L KNTIVVF+ DHGRAMPRGKQWPYDSGLHIPLIIYWPEGN+DLP P  Y RG ++ QLI+S DLSATTLA AG++KP +MQG+VFLG Q E  R YLF GRDRGDETV +IRTVRD  +RY+RN YPERPFLQ+NRYKE QYPIIGLLR LH +GEL+
Sbjct:  210 EEIELPPYYPDHPVSRAVWAQYLNTVMAADKKVKYILDLLKRDGLAKNTIVVFLGDHGRAMPRGKQWPYDSGLHIPLIIYWPEGNADLPEPEGYKRGTENKQLIASTDLSATTLAWAGLDKPEKMQGRVFLGEQREPARKYLFAGRDRGDETVDYIRTVRDSHYRYIRNGYPERPFLQLNRYKERQYPIIGLLRSLHEQGELT 412          
BLAST of mRNA_M-pyrifera_M_contig108613.1815.1 vs. uniprot
Match: A0A2E0AYA0_9BACT (Sulfatase n=2 Tax=Planctomycetia TaxID=203683 RepID=A0A2E0AYA0_9BACT)

HSP 1 Score: 316 bits (809), Expect = 3.900e-103
Identity = 144/203 (70.94%), Postives = 168/203 (82.76%), Query Frame = 1
Query:    1 EKVQIPPYYPDHPVTRAVWAQYLNTVMAVDKKVAFILDLLKRDQLDKNTIVVFMADHGRAMPRGKQWPYDSGLHIPLIIYWPEGNSDLPAPAQYHRGEKSDQLISSIDLSATTLALAGIEKPSRMQGQVFLGSQTEKPRSYLFGGRDRGDETVFHIRTVRDKQFRYLRNKYPERPFLQINRYKETQYPIIGLLRDLHAKGELS 609
            ++V IPPYYPDHPVTR VWAQYLN VM+ DKKVAFILD LK D LDKNTIV+FM DHGRAMPRGKQWPYDSGLHIPL+IYWPE N+ LP P  Y R  +S QL++SIDL+ATTLA AG+ KP  MQG+V  G+  E PR  LF GRDRGDETV H+RTVR +++RY+RN+YPERPFL++NRYKE  YPIIGLLRDL  +G+L+
Sbjct:  218 DQVTIPPYYPDHPVTRGVWAQYLNAVMSADKKVAFILDRLKEDGLDKNTIVLFMGDHGRAMPRGKQWPYDSGLHIPLVIYWPEANAQLPEPDGYRRATRSQQLVASIDLTATTLAWAGVAKPPSMQGRVLFGTDAESPRDMLFAGRDRGDETVLHVRTVRTQRYRYIRNQYPERPFLELNRYKEASYPIIGLLRDLDQRGKLA 420          
BLAST of mRNA_M-pyrifera_M_contig108613.1815.1 vs. uniprot
Match: A0A356A5C7_9PLAN (Sulfatase n=3 Tax=Planctomycetaceae TaxID=126 RepID=A0A356A5C7_9PLAN)

HSP 1 Score: 315 bits (806), Expect = 6.790e-103
Identity = 144/203 (70.94%), Postives = 170/203 (83.74%), Query Frame = 1
Query:    1 EKVQIPPYYPDHPVTRAVWAQYLNTVMAVDKKVAFILDLLKRDQLDKNTIVVFMADHGRAMPRGKQWPYDSGLHIPLIIYWPEGNSDLPAPAQYHRGEKSDQLISSIDLSATTLALAGIEKPSRMQGQVFLGSQTEKPRSYLFGGRDRGDETVFHIRTVRDKQFRYLRNKYPERPFLQINRYKETQYPIIGLLRDLHAKGELS 609
            E + +PPYYPDH V+RAVWAQYLNTVMAVD+KV +IL+LLKRD LDKNTIVVF+ DHGRAMPRGKQWPYDSGLH+PLIIYWPEGN +L  P  Y RG  S+QLI+SIDLSATTL  AG+EKP  MQG++ +G   E+PR  LFGGRDRGDET+ HIRT R  +FRYL+N YPE+PF++ N YKETQYPI+GLLR LH +G+L+
Sbjct:  203 ENIDLPPYYPDHSVSRAVWAQYLNTVMAVDEKVKYILNLLKRDGLDKNTIVVFLGDHGRAMPRGKQWPYDSGLHVPLIIYWPEGNENLSEPKGYARGTVSEQLIASIDLSATTLDWAGVEKPKLMQGRILMGDHAEEPREILFGGRDRGDETILHIRTARTDRFRYLKNGYPEKPFMEFNHYKETQYPIMGLLRYLHREGKLT 405          
BLAST of mRNA_M-pyrifera_M_contig108613.1815.1 vs. uniprot
Match: UPI001EE85121 (sulfatase n=1 Tax=Rubinisphaera sp. ICM_H10 TaxID=2909586 RepID=UPI001EE85121)

HSP 1 Score: 314 bits (805), Expect = 8.560e-103
Identity = 147/203 (72.41%), Postives = 170/203 (83.74%), Query Frame = 1
Query:    1 EKVQIPPYYPDHPVTRAVWAQYLNTVMAVDKKVAFILDLLKRDQLDKNTIVVFMADHGRAMPRGKQWPYDSGLHIPLIIYWPEGNSDLPAPAQYHRGEKSDQLISSIDLSATTLALAGIEKPSRMQGQVFLGSQTEKPRSYLFGGRDRGDETVFHIRTVRDKQFRYLRNKYPERPFLQINRYKETQYPIIGLLRDLHAKGELS 609
            E ++IPPYYPDH V RAVWAQYLNTVMAVDKKV FILDLLKRD LDKNTIVVF+ADHGRAMPR KQWPY+SGLH+PLIIYWPE NS  P P  Y RGE + QL++SIDLSATTL  AG+EKP+ MQG++ LG   E+PR  +FGGRDRGDE++FHIRTVR+ +FRYL+NK PE PFL+ N YKETQYPI+GLL  LH + EL+
Sbjct:  200 ETIEIPPYYPDHSVVRAVWAQYLNTVMAVDKKVGFILDLLKRDGLDKNTIVVFLADHGRAMPRSKQWPYESGLHVPLIIYWPE-NSSFPEPKGYTRGESTRQLVASIDLSATTLDWAGVEKPANMQGRILLGKNAEQPRDLIFGGRDRGDESLFHIRTVRNDRFRYLKNKNPETPFLEFNHYKETQYPIVGLLHYLHDRNELT 401          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108613.1815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A517WIA9_9PLAN2.160e-14399.51Arylsulfatase n=6 Tax=Gimesia TaxID=1649453 RepID=... [more]
A0A518ABR1_9PLAN4.370e-13390.59Arylsulfatase n=3 Tax=Gimesia panareensis TaxID=25... [more]
A0A517RKY0_9PLAN1.620e-12586.63Arylsulfatase n=1 Tax=Gimesia alba TaxID=2527973 R... [more]
A0A517VJ78_9PLAN3.200e-12084.58Arylsulfatase n=12 Tax=Planctomycetaceae TaxID=126... [more]
A0A517WXY8_9PLAN8.560e-12082.67Arylsulfatase n=2 Tax=Gimesia aquarii TaxID=252796... [more]
A0A518IHU9_9PLAN3.590e-11781.19Arylsulfatase n=1 Tax=Gimesia fumaroli TaxID=25279... [more]
A0A5Q3L9M8_9BACT6.770e-11076.35Arylsulfatase A n=1 Tax=Planctomycetales bacterium... [more]
A0A2E0AYA0_9BACT3.900e-10370.94Sulfatase n=2 Tax=Planctomycetia TaxID=203683 RepI... [more]
A0A356A5C7_9PLAN6.790e-10370.94Sulfatase n=3 Tax=Planctomycetaceae TaxID=126 RepI... [more]
UPI001EE851218.560e-10372.41sulfatase n=1 Tax=Rubinisphaera sp. ICM_H10 TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108613contigM-pyrifera_M_contig108613:2..610 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score371.3
Seed ortholog evalue2.8e-100
Seed eggNOG ortholog344747.PM8797T_20044
Hectar predicted targeting categoryother localisation
EggNOG free text desc.COG3119 Arylsulfatase A
EggNOG OGs2IXG7@203682,COG3119@1,COG3119@2
COG Functional cat.P
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size609
Cds size609
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815596.0329428-CDS-M-pyrifera_M_contig108613:1..6101622815596.0329428-CDS-M-pyrifera_M_contig108613:1..610Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108613 2..610 +
1692277479.821877-CDS-M-pyrifera_M_contig108613:1..6101692277479.821877-CDS-M-pyrifera_M_contig108613:1..610Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108613 2..610 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108613.1815.1prot_M-pyrifera_M_contig108613.1815.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108613 2..610 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108613.1815.1

>prot_M-pyrifera_M_contig108613.1815.1 ID=prot_M-pyrifera_M_contig108613.1815.1|Name=mRNA_M-pyrifera_M_contig108613.1815.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=203bp
EKVQIPPYYPDHPVTRAVWAQYLNTVMAVDKKVAFILDLLKRDQLDKNTI
VVFMADHGRAMPRGKQWPYDSGLHIPLIIYWPEGNSDLPAPAQYHRGEKS
DQLISSIDLSATTLALAGIEKPSRMQGQVFLGSQTEKPRSYLFGGRDRGD
ETVFHIRTVRDKQFRYLRNKYPERPFLQINRYKETQYPIIGLLRDLHAKG
ELS
back to top

mRNA from alignment at M-pyrifera_M_contig108613:2..610+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108613.1815.1 ID=mRNA_M-pyrifera_M_contig108613.1815.1|Name=mRNA_M-pyrifera_M_contig108613.1815.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=609bp|location=Sequence derived from alignment at M-pyrifera_M_contig108613:2..610+ (Macrocystis pyrifera P11B4 male)
GAGAAAGTTCAGATCCCCCCTTACTATCCCGATCACCCGGTGACCCGGGC GGTCTGGGCACAGTATCTGAATACCGTGATGGCCGTCGATAAGAAGGTCG CGTTTATTCTGGATCTGCTCAAGCGGGATCAGCTGGATAAGAATACGATC GTCGTGTTCATGGCCGATCATGGTCGCGCCATGCCCCGCGGCAAACAGTG GCCTTACGACAGCGGCCTACATATCCCGCTGATCATTTACTGGCCCGAAG GAAATTCGGATCTGCCGGCCCCCGCCCAGTATCATCGAGGTGAGAAGAGC GATCAGTTGATCTCGTCCATTGACCTGAGTGCGACCACGCTGGCCCTGGC GGGCATTGAGAAACCATCCCGCATGCAGGGACAGGTTTTTCTGGGTAGCC AGACCGAGAAGCCGCGCAGCTACCTGTTTGGCGGACGGGACCGCGGCGAC GAAACCGTGTTCCACATCCGCACGGTTCGTGACAAGCAGTTCCGTTATCT GAGAAACAAGTATCCCGAACGGCCGTTCCTGCAGATCAATCGTTATAAGG AAACCCAGTACCCAATCATCGGACTGCTGCGGGATCTGCATGCGAAAGGG GAGTTAAGC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig108613:2..610+

>mRNA_M-pyrifera_M_contig108613.1815.1 ID=mRNA_M-pyrifera_M_contig108613.1815.1|Name=mRNA_M-pyrifera_M_contig108613.1815.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1218bp|location=Sequence derived from alignment at M-pyrifera_M_contig108613:2..610+ (Macrocystis pyrifera P11B4 male)
GAGAAAGTTCAGATCCCCCCTTACTATCCCGATCACCCGGTGACCCGGGC
GGTCTGGGCACAGTATCTGAATACCGTGATGGCCGTCGATAAGAAGGTCG
CGTTTATTCTGGATCTGCTCAAGCGGGATCAGCTGGATAAGAATACGATC
GTCGTGTTCATGGCCGATCATGGTCGCGCCATGCCCCGCGGCAAACAGTG
GCCTTACGACAGCGGCCTACATATCCCGCTGATCATTTACTGGCCCGAAG
GAAATTCGGATCTGCCGGCCCCCGCCCAGTATCATCGAGGTGAGAAGAGC
GATCAGTTGATCTCGTCCATTGACCTGAGTGCGACCACGCTGGCCCTGGC
GGGCATTGAGAAACCATCCCGCATGCAGGGACAGGTTTTTCTGGGTAGCC
AGACCGAGAAGCCGCGCAGCTACCTGTTTGGCGGACGGGACCGCGGCGAC
GAAACCGTGTTCCACATCCGCACGGTTCGTGACAAGCAGTTCCGTTATCT
GAGAAACAAGTATCCCGAACGGCCGTTCCTGCAGATCAATCGTTATAAGG
AAACCCAGTACCCAATCATCGGACTGCTGCGGGATCTGCATGCGAAAGGG
GAGTTAAGCGAGAAAGTTCAGATCCCCCCTTACTATCCCGATCACCCGGT
GACCCGGGCGGTCTGGGCACAGTATCTGAATACCGTGATGGCCGTCGATA
AGAAGGTCGCGTTTATTCTGGATCTGCTCAAGCGGGATCAGCTGGATAAG
AATACGATCGTCGTGTTCATGGCCGATCATGGTCGCGCCATGCCCCGCGG
CAAACAGTGGCCTTACGACAGCGGCCTACATATCCCGCTGATCATTTACT
GGCCCGAAGGAAATTCGGATCTGCCGGCCCCCGCCCAGTATCATCGAGGT
GAGAAGAGCGATCAGTTGATCTCGTCCATTGACCTGAGTGCGACCACGCT
GGCCCTGGCGGGCATTGAGAAACCATCCCGCATGCAGGGACAGGTTTTTC
TGGGTAGCCAGACCGAGAAGCCGCGCAGCTACCTGTTTGGCGGACGGGAC
CGCGGCGACGAAACCGTGTTCCACATCCGCACGGTTCGTGACAAGCAGTT
CCGTTATCTGAGAAACAAGTATCCCGAACGGCCGTTCCTGCAGATCAATC
GTTATAAGGAAACCCAGTACCCAATCATCGGACTGCTGCGGGATCTGCAT
GCGAAAGGGGAGTTAAGC
back to top