mRNA_M-pyrifera_M_contig108609.1814.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108609.1814.1
Unique NamemRNA_M-pyrifera_M_contig108609.1814.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig108609.1814.1 vs. uniprot
Match: UPI001CD37ED2 (ankyrin repeat domain-containing protein n=1 Tax=Rossellomorea aquimaris TaxID=189382 RepID=UPI001CD37ED2)

HSP 1 Score: 51.6 bits (122), Expect = 5.790e-6
Identity = 30/73 (41.10%), Postives = 43/73 (58.90%), Query Frame = 1
Query:   52 SARIVPQLVKLGANVNQAESSTGHTPLHKAAIQGEAGLMSALLANGANPTIKDAQGRTPIFYVLELANRRLFS 270
            S  +V  L+  GANVNQ +SS GHTPLH AA  G A ++S LLA G    ++  + ++PI   +E  N+   +
Sbjct:   91 SKELVEFLLDQGANVNQLDSS-GHTPLHIAAFDGSAEIVSLLLAYGDGQEMQSGKAQSPIEIAIERDNKEFLN 162          
BLAST of mRNA_M-pyrifera_M_contig108609.1814.1 vs. uniprot
Match: A0A6P8I2B2_ACTTE (ARF GTPase-activating protein GIT2-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8I2B2_ACTTE)

HSP 1 Score: 52.4 bits (124), Expect = 7.920e-6
Identity = 27/65 (41.54%), Postives = 38/65 (58.46%), Query Frame = 1
Query:   70 QLVKLGANVNQAESSTGHTPLHKAAIQGEAGLMSALLANGANPTIKDAQGRTPIFYVLELANRRL 264
            +L+  GA  N      G+TPLH A   G+A  +  L+ +GA+PTI D  G+TP+ Y +E  NR L
Sbjct:  157 RLLSNGAQPNYIHPEKGNTPLHIATSAGQALQVELLVVHGADPTILDVNGKTPMDYAIEAGNRDL 221          
BLAST of mRNA_M-pyrifera_M_contig108609.1814.1 vs. uniprot
Match: A0A1F8Q1R0_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium RBG_16_52_11 TaxID=1797646 RepID=A0A1F8Q1R0_9CHLR)

HSP 1 Score: 51.2 bits (121), Expect = 9.980e-6
Identity = 34/82 (41.46%), Postives = 49/82 (59.76%), Query Frame = 1
Query:   10 ATGRDGTNALHYA---SSARIVPQLVKLGANVNQAESSTGHTPLHKAAIQGEAGLMSALLANGANPTIKDAQGRTPIFYVLE 246
            A+G  G   L++A   S+  +V  L+  GA VN   S  G+TPLH A +  +  ++S LLANGA+ ++KD  GRTP+   LE
Sbjct:   97 ASGAHGIPLLYFAVIRSNLEVVVMLLSRGAMVNAGAS--GNTPLHGAVMFRQDRMVSWLLANGADASLKDYNGRTPLELALE 176          
BLAST of mRNA_M-pyrifera_M_contig108609.1814.1 vs. uniprot
Match: A0A1X7TKR5_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TKR5_AMPQE)

HSP 1 Score: 50.8 bits (120), Expect = 2.480e-5
Identity = 26/57 (45.61%), Postives = 35/57 (61.40%), Query Frame = 1
Query:   94 VNQAESSTGHTPLHKAAIQGEAGLMSALLANGANPTIKDAQGRTPIFYVLELANRRL 264
            +N   + TG TPLH A I     ++  LL NGANP+I+D+ GRTPI Y    + R+L
Sbjct:  178 INPYATYTGFTPLHYAVITDNEDIIQLLLDNGANPSIEDSMGRTPINYCTNESVRKL 234          
BLAST of mRNA_M-pyrifera_M_contig108609.1814.1 vs. uniprot
Match: UPI00106CD5F1 (ankyrin repeat domain-containing protein 50-like isoform X1 n=2 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106CD5F1)

HSP 1 Score: 50.4 bits (119), Expect = 2.700e-5
Identity = 25/56 (44.64%), Postives = 35/56 (62.50%), Query Frame = 1
Query:   61 IVPQLVKLGANVNQAESSTGHTPLHKAAIQGEAGLMSALLANGANPTIKDAQGRTP 228
            +V  LV+ GANVN     +  TPLH A  Q    ++  LL NGA+P +KD++GR+P
Sbjct:   77 VVKSLVEGGANVNIQNPGSMWTPLHAATFQEHGKIVMYLLENGADPNVKDSEGRSP 132          
BLAST of mRNA_M-pyrifera_M_contig108609.1814.1 vs. uniprot
Match: UPI00096B4DE1 (caseinolytic peptidase B protein homolog n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=UPI00096B4DE1)

HSP 1 Score: 50.8 bits (120), Expect = 2.720e-5
Identity = 26/57 (45.61%), Postives = 35/57 (61.40%), Query Frame = 1
Query:   94 VNQAESSTGHTPLHKAAIQGEAGLMSALLANGANPTIKDAQGRTPIFYVLELANRRL 264
            +N   + TG TPLH A I     ++  LL NGANP+I+D+ GRTPI Y    + R+L
Sbjct:  182 INPYATYTGFTPLHYAVITDNEDIIQLLLDNGANPSIEDSMGRTPINYCTNESVRKL 238          
BLAST of mRNA_M-pyrifera_M_contig108609.1814.1 vs. uniprot
Match: A0A1Y3EBM0_9BILA (Poly [ADP-ribose] polymerase n=1 Tax=Trichinella nativa TaxID=6335 RepID=A0A1Y3EBM0_9BILA)

HSP 1 Score: 50.8 bits (120), Expect = 2.820e-5
Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 1
Query:   85 GANVNQAESSTGHTPLHKAAIQGEAGLMSALLANGANPTIKDAQGRTPI 231
            GANVN A      TPLH+AAI+G   +   LLA+GANPT+K++ G+TPI
Sbjct:  388 GANVN-ATDLWQFTPLHEAAIKGRTEVCICLLAHGANPTVKNSNGKTPI 435          
BLAST of mRNA_M-pyrifera_M_contig108609.1814.1 vs. uniprot
Match: A0A553N7M1_TIGCA (Uncharacterized protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553N7M1_TIGCA)

HSP 1 Score: 50.1 bits (118), Expect = 3.610e-5
Identity = 30/76 (39.47%), Postives = 41/76 (53.95%), Query Frame = 1
Query:   25 GTNALHYASS---------ARIVPQLVKLGANVNQAESSTGHTPLHKAAIQGEAGLMSALLANGANPTIKDAQGRT 225
            G N LH+  +         A +V  L+  GA++NQA ++ G TPL  A + G A ++S LLA GA P I D  G T
Sbjct:   55 GQNGLHFVVATTHPDEKRQANLVKYLLSKGADINQARTTDGWTPLFLAVMWGRAEIVSLLLARGAKPRITDQMGMT 130          
BLAST of mRNA_M-pyrifera_M_contig108609.1814.1 vs. uniprot
Match: A0D8T4_PARTE (Palmitoyltransferase n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0D8T4_PARTE)

HSP 1 Score: 50.4 bits (119), Expect = 3.700e-5
Identity = 28/77 (36.36%), Postives = 45/77 (58.44%), Query Frame = 1
Query:   25 GTNALH---YASSARIVPQLVKLGANVNQAESSTGHTPLHKAAIQGEAGLMSALLANGANPTIKDAQGRTPIFYVLE 246
            G++ LH   Y+ S   V  L+   AN+N  ++ T  TPLH A +Q  + ++  LL  GA+ +IKD+ G+TP+   +E
Sbjct:  170 GSSPLHWAAYSGSYNAVNFLISWNANLNLQDTDTSVTPLHLATMQANSRIVRKLLMKGADRSIKDSNGKTPLDLAIE 246          
BLAST of mRNA_M-pyrifera_M_contig108609.1814.1 vs. uniprot
Match: UPI001E2799BE (inhibitor of Bruton tyrosine kinase n=1 Tax=Harmonia axyridis TaxID=115357 RepID=UPI001E2799BE)

HSP 1 Score: 50.4 bits (119), Expect = 3.850e-5
Identity = 30/78 (38.46%), Postives = 46/78 (58.97%), Query Frame = 1
Query:   25 GTNALHYASS---ARIVPQLVK-LGANVNQAESSTGHTPLHKAAIQGEAGLMSALLANGANPTIKDAQGRTPIFYVLE 246
            G  ALH ++S    ++V  L+K    N+N  ++ +G+TPLH+A   G   +   LL  GA+PT+ D  G TPI +V+E
Sbjct:   57 GRTALHSSASYGNLQVVKWLLKNKNGNINARDNESGYTPLHRALYFGRINIAIELLKAGADPTLLDRDGLTPIEHVIE 134          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108609.1814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
UPI001CD37ED25.790e-641.10ankyrin repeat domain-containing protein n=1 Tax=R... [more]
A0A6P8I2B2_ACTTE7.920e-641.54ARF GTPase-activating protein GIT2-like n=1 Tax=Ac... [more]
A0A1F8Q1R0_9CHLR9.980e-641.46Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A1X7TKR5_AMPQE2.480e-545.61Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
UPI00106CD5F12.700e-544.64ankyrin repeat domain-containing protein 50-like i... [more]
UPI00096B4DE12.720e-545.61caseinolytic peptidase B protein homolog n=1 Tax=A... [more]
A0A1Y3EBM0_9BILA2.820e-555.10Poly [ADP-ribose] polymerase n=1 Tax=Trichinella n... [more]
A0A553N7M1_TIGCA3.610e-539.47Uncharacterized protein n=1 Tax=Tigriopus californ... [more]
A0D8T4_PARTE3.700e-536.36Palmitoyltransferase n=1 Tax=Paramecium tetraureli... [more]
UPI001E2799BE3.850e-538.46inhibitor of Bruton tyrosine kinase n=1 Tax=Harmon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108609contigM-pyrifera_M_contig108609:342..611 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue2.3e-09
Seed eggNOG ortholog400682.PAC_15702665
KEGG koko:K21411
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of smoothened signaling pathway
EggNOG OGsCOG0666@1,KOG1710@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03400
Exons1
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815595.9967752-CDS-M-pyrifera_M_contig108609:341..6111622815595.9967752-CDS-M-pyrifera_M_contig108609:341..611Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108609 342..611 -
1692277479.811151-CDS-M-pyrifera_M_contig108609:341..6111692277479.811151-CDS-M-pyrifera_M_contig108609:341..611Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108609 342..611 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108609.1814.1prot_M-pyrifera_M_contig108609.1814.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108609 342..611 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108609.1814.1

>prot_M-pyrifera_M_contig108609.1814.1 ID=prot_M-pyrifera_M_contig108609.1814.1|Name=mRNA_M-pyrifera_M_contig108609.1814.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=90bp
DASATGRDGTNALHYASSARIVPQLVKLGANVNQAESSTGHTPLHKAAIQ
GEAGLMSALLANGANPTIKDAQGRTPIFYVLELANRRLFS
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mRNA from alignment at M-pyrifera_M_contig108609:342..611-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108609.1814.1 ID=mRNA_M-pyrifera_M_contig108609.1814.1|Name=mRNA_M-pyrifera_M_contig108609.1814.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=270bp|location=Sequence derived from alignment at M-pyrifera_M_contig108609:342..611- (Macrocystis pyrifera P11B4 male)
GACGCCTCTGCCACTGGGCGAGATGGGACCAATGCGCTCCACTATGCCTC CAGTGCTCGGATTGTGCCGCAGCTGGTAAAGTTGGGAGCGAACGTAAACC AAGCAGAATCCAGCACAGGCCACACTCCACTCCACAAGGCAGCCATCCAA GGAGAAGCAGGCCTCATGAGCGCCCTCCTCGCCAACGGAGCAAACCCCAC CATCAAGGACGCACAAGGCAGAACTCCAATCTTCTACGTGCTCGAGCTTG CCAACCGAAGGCTCTTCTCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108609:342..611-

>mRNA_M-pyrifera_M_contig108609.1814.1 ID=mRNA_M-pyrifera_M_contig108609.1814.1|Name=mRNA_M-pyrifera_M_contig108609.1814.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig108609:342..611- (Macrocystis pyrifera P11B4 male)
GACGCCTCTGCCACTGGGCGAGATGGGACCAATGCGCTCCACTATGCCTC
CAGTGCTCGGATTGTGCCGCAGCTGGTAAAGTTGGGAGCGAACGTAAACC
AAGCAGAATCCAGCACAGGCCACACTCCACTCCACAAGGCAGCCATCCAA
GGAGAAGCAGGCCTCATGAGCGCCCTCCTCGCCAACGGAGCAAACCCCAC
CATCAAGGACGCACAAGGCAGAACTCCAATCTTCTACGTGCTCGAGCTTG
CCAACCGAAGGCTCTTCTCCGACGCCTCTGCCACTGGGCGAGATGGGACC
AATGCGCTCCACTATGCCTCCAGTGCTCGGATTGTGCCGCAGCTGGTAAA
GTTGGGAGCGAACGTAAACCAAGCAGAATCCAGCACAGGCCACACTCCAC
TCCACAAGGCAGCCATCCAAGGAGAAGCAGGCCTCATGAGCGCCCTCCTC
GCCAACGGAGCAAACCCCACCATCAAGGACGCACAAGGCAGAACTCCAAT
CTTCTACGTGCTCGAGCTTGCCAACCGAAGGCTCTTCTCC
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