mRNA_M-pyrifera_M_contig108589.1811.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig108589.1811.1 vs. uniprot
Match: A0A2K3PC21_TRIPR (Ccr4-not transcription complex subunit 1-like protein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3PC21_TRIPR) HSP 1 Score: 236 bits (601), Expect = 7.150e-72 Identity = 114/204 (55.88%), Postives = 152/204 (74.51%), Query Frame = 1 Query: 1 LACFSNLLHELQPQRLPGFAVSWLELVSHRSFMPRLLLVKGKAGWPHLQRLLVDLLQFLHPYLRAAALRDPIRQLYHGTLRVMLVLLHDFPEFLSEYYCCLCDVLPSTCIQLRNLILSAMPRHVQLHDPFTPNLKVDLLPEVREAPPIMAHYDAALEAAELKEPLSKFMESPASVPGFLPSLISQLLLSPEEAAEQGTSVNVPL 612 L F+N H LQP ++PGF+ +WLELVSHRSFMP++L G+ GW H+Q+LLVDL QF+ P+LR A L DP+R LY GTLRV+LVLLHDFPEFL +Y+ CDV+P +CIQ+RN+ILSA PR ++L DP TPNLK+DLL E+ ++P I++ DAAL+A ++K + +++++ P FL L +LLLSP E A GT NVPL Sbjct: 158 LTAFANTFHALQPLKVPGFSFAWLELVSHRSFMPKMLTGNGQKGWQHIQKLLVDLFQFMEPFLRHAELGDPVRVLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRSMRLPDPSTPNLKIDLLQEITQSPRILSEVDAALKAKQMKADIDEYLKTEQGTP-FLSELKEKLLLSPNEVASAGTHYNVPL 360
BLAST of mRNA_M-pyrifera_M_contig108589.1811.1 vs. uniprot
Match: A0A1U8I0Y6_GOSHI (CCR4-NOT transcription complex subunit 1-like n=2 Tax=Gossypium TaxID=3633 RepID=A0A1U8I0Y6_GOSHI) HSP 1 Score: 236 bits (601), Expect = 7.850e-72 Identity = 117/205 (57.07%), Postives = 153/205 (74.63%), Query Frame = 1 Query: 1 LACFSNLLHELQPQRLPGFAVSWLELVSHRSFMPRLLLVKGKAGWPHLQRLLVDLLQFLHPYLRAAALRDPIRQLYHGTLRVMLVLLHDFPEFLSEYYCCLCDVLPSTCIQLRNLILSAMPRHVQLHDPFTPNLKVDLLPEVREAPPIMAHYDAALEAAELKEPLSKFMES-PASVPGFLPSLISQLLLSPEEAAEQGTSVNVPL 612 L F+N H LQP ++P F +WLELVSHR+FMP+LL + GWP++QRLLVDLLQFL P+LR A L P+ LY GTLRV+LVLLHDFPEFL +Y+ CDV+P +CIQ+RN+ILSA PR+++L DP TPNLK+DLLPE+RE+P I++ DAAL+A ++K + +++++ P FL L +LLLSP EAA GT NVPL Sbjct: 158 LTAFANTFHVLQPLKVPSFCFAWLELVSHRTFMPKLLTGNSQKGWPYIQRLLVDLLQFLEPFLRNAELGVPVHFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRESPRILSEVDAALKAKQMKADVDEYLKTRPQGGSSFLTELKQRLLLSPSEAASAGTRYNVPL 362
BLAST of mRNA_M-pyrifera_M_contig108589.1811.1 vs. uniprot
Match: UPI000B8CD776 (CCR4-NOT transcription complex subunit 1-like n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CD776) HSP 1 Score: 240 bits (612), Expect = 1.170e-71 Identity = 118/204 (57.84%), Postives = 153/204 (75.00%), Query Frame = 1 Query: 1 LACFSNLLHELQPQRLPGFAVSWLELVSHRSFMPRLLLVKGKAGWPHLQRLLVDLLQFLHPYLRAAALRDPIRQLYHGTLRVMLVLLHDFPEFLSEYYCCLCDVLPSTCIQLRNLILSAMPRHVQLHDPFTPNLKVDLLPEVREAPPIMAHYDAALEAAELKEPLSKFMESPASVPGFLPSLISQLLLSPEEAAEQGTSVNVPL 612 L F+N H LQP ++P F+ +WLELVSHRSFMP+LL G+ GWP++QRLLVDLLQFL P+LR A L P+ LY GTLRV+LVLLHDFPEFL +Y+ CDV+P +CIQ+RN+ILSA PR+++L DP TPNLK+DLLPE+RE P I++ DAAL+A ++K + +++++ FL L +LLLSP EAA GT NVPL Sbjct: 368 LTAFANAFHALQPLKVPAFSFAWLELVSHRSFMPKLLTGNGQKGWPYVQRLLVDLLQFLEPFLRHAELGVPVHFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIREPPRILSEVDAALKAKQMKADVDEYLKTRQQGSSFLSELKQRLLLSPSEAASAGTRYNVPL 571
BLAST of mRNA_M-pyrifera_M_contig108589.1811.1 vs. uniprot
Match: A0A6J0NSY5_RAPSA (CCR4-NOT transcription complex subunit 1-like n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0NSY5_RAPSA) HSP 1 Score: 234 bits (596), Expect = 1.560e-71 Identity = 115/204 (56.37%), Postives = 152/204 (74.51%), Query Frame = 1 Query: 1 LACFSNLLHELQPQRLPGFAVSWLELVSHRSFMPRLLLVKGKAGWPHLQRLLVDLLQFLHPYLRAAALRDPIRQLYHGTLRVMLVLLHDFPEFLSEYYCCLCDVLPSTCIQLRNLILSAMPRHVQLHDPFTPNLKVDLLPEVREAPPIMAHYDAALEAAELKEPLSKFMESPASVPGFLPSLISQLLLSPEEAAEQGTSVNVPL 612 L F+N H LQP ++P F+ +WLELVSHRSFMP++L V G+ GWP++QRLLVDLLQFL P+LR A L P+ LY GTLRV+LVLLHDFPEFL +Y+ CDV+PS+CIQ+RN+ILS+ PR+++L DP TPNLK+DLLPE+ EAP I++ DA L+A ++K + +++ FL L +LLLSP EA+ GT +VPL Sbjct: 127 LTAFANAFHALQPLKVPAFSFAWLELVSHRSFMPKMLTVNGQKGWPYVQRLLVDLLQFLEPFLRNAELGGPVNFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPSSCIQMRNIILSSFPRNMRLPDPSTPNLKIDLLPEIVEAPCILSEVDAVLKAKQMKNDVDEYLTLRQQNSTFLSELKQKLLLSPSEASLAGTRYSVPL 330
BLAST of mRNA_M-pyrifera_M_contig108589.1811.1 vs. uniprot
Match: A0A6P6AZ86_DURZI (CCR4-NOT transcription complex subunit 1-like isoform X4 n=1 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P6AZ86_DURZI) HSP 1 Score: 241 bits (616), Expect = 3.360e-70 Identity = 118/204 (57.84%), Postives = 153/204 (75.00%), Query Frame = 1 Query: 1 LACFSNLLHELQPQRLPGFAVSWLELVSHRSFMPRLLLVKGKAGWPHLQRLLVDLLQFLHPYLRAAALRDPIRQLYHGTLRVMLVLLHDFPEFLSEYYCCLCDVLPSTCIQLRNLILSAMPRHVQLHDPFTPNLKVDLLPEVREAPPIMAHYDAALEAAELKEPLSKFMESPASVPGFLPSLISQLLLSPEEAAEQGTSVNVPL 612 L F+N H LQP ++P F+ +WLELVSHRSFMP+LL + GWP++QRLLVDLLQFL P+LR A LR P+ LY GTLRV+LVLLHDFPEFL +Y+ CDV+P +CIQ+RN+ILSA PR+++L DP TPNLK+DLLPE+RE P I++ DAAL+A ++K + +++++ FL L +LLLSP EAA GT NVPL Sbjct: 1971 LTAFANAFHALQPLKVPAFSFAWLELVSHRSFMPKLLTGNAQKGWPYIQRLLVDLLQFLEPFLRNAELRGPVHFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIREPPRILSEVDAALKAKQMKADVDEYLKTKLQGGSFLTELKQRLLLSPSEAASAGTRYNVPL 2174
BLAST of mRNA_M-pyrifera_M_contig108589.1811.1 vs. uniprot
Match: A0A6P6AZL3_DURZI (CCR4-NOT transcription complex subunit 1-like isoform X2 n=1 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P6AZL3_DURZI) HSP 1 Score: 241 bits (616), Expect = 3.370e-70 Identity = 118/204 (57.84%), Postives = 153/204 (75.00%), Query Frame = 1 Query: 1 LACFSNLLHELQPQRLPGFAVSWLELVSHRSFMPRLLLVKGKAGWPHLQRLLVDLLQFLHPYLRAAALRDPIRQLYHGTLRVMLVLLHDFPEFLSEYYCCLCDVLPSTCIQLRNLILSAMPRHVQLHDPFTPNLKVDLLPEVREAPPIMAHYDAALEAAELKEPLSKFMESPASVPGFLPSLISQLLLSPEEAAEQGTSVNVPL 612 L F+N H LQP ++P F+ +WLELVSHRSFMP+LL + GWP++QRLLVDLLQFL P+LR A LR P+ LY GTLRV+LVLLHDFPEFL +Y+ CDV+P +CIQ+RN+ILSA PR+++L DP TPNLK+DLLPE+RE P I++ DAAL+A ++K + +++++ FL L +LLLSP EAA GT NVPL Sbjct: 2027 LTAFANAFHALQPLKVPAFSFAWLELVSHRSFMPKLLTGNAQKGWPYIQRLLVDLLQFLEPFLRNAELRGPVHFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIREPPRILSEVDAALKAKQMKADVDEYLKTKLQGGSFLTELKQRLLLSPSEAASAGTRYNVPL 2230
BLAST of mRNA_M-pyrifera_M_contig108589.1811.1 vs. uniprot
Match: A0A6P6AZE0_DURZI (CCR4-NOT transcription complex subunit 1-like isoform X1 n=8 Tax=Malvaceae TaxID=3629 RepID=A0A6P6AZE0_DURZI) HSP 1 Score: 241 bits (616), Expect = 3.370e-70 Identity = 118/204 (57.84%), Postives = 153/204 (75.00%), Query Frame = 1 Query: 1 LACFSNLLHELQPQRLPGFAVSWLELVSHRSFMPRLLLVKGKAGWPHLQRLLVDLLQFLHPYLRAAALRDPIRQLYHGTLRVMLVLLHDFPEFLSEYYCCLCDVLPSTCIQLRNLILSAMPRHVQLHDPFTPNLKVDLLPEVREAPPIMAHYDAALEAAELKEPLSKFMESPASVPGFLPSLISQLLLSPEEAAEQGTSVNVPL 612 L F+N H LQP ++P F+ +WLELVSHRSFMP+LL + GWP++QRLLVDLLQFL P+LR A LR P+ LY GTLRV+LVLLHDFPEFL +Y+ CDV+P +CIQ+RN+ILSA PR+++L DP TPNLK+DLLPE+RE P I++ DAAL+A ++K + +++++ FL L +LLLSP EAA GT NVPL Sbjct: 2034 LTAFANAFHALQPLKVPAFSFAWLELVSHRSFMPKLLTGNAQKGWPYIQRLLVDLLQFLEPFLRNAELRGPVHFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIREPPRILSEVDAALKAKQMKADVDEYLKTKLQGGSFLTELKQRLLLSPSEAASAGTRYNVPL 2237
BLAST of mRNA_M-pyrifera_M_contig108589.1811.1 vs. uniprot
Match: A0A836J2T2_9ROSI (CCR4-NOT transcription complex n=1 Tax=Salix suchowensis TaxID=1278906 RepID=A0A836J2T2_9ROSI) HSP 1 Score: 232 bits (592), Expect = 1.260e-69 Identity = 115/204 (56.37%), Postives = 146/204 (71.57%), Query Frame = 1 Query: 1 LACFSNLLHELQPQRLPGFAVSWLELVSHRSFMPRLLLVKGKAGWPHLQRLLVDLLQFLHPYLRAAALRDPIRQLYHGTLRVMLVLLHDFPEFLSEYYCCLCDVLPSTCIQLRNLILSAMPRHVQLHDPFTPNLKVDLLPEVREAPPIMAHYDAALEAAELKEPLSKFMESPASVPGFLPSLISQLLLSPEEAAEQGTSVNVPL 612 L F+ H LQP ++PGF+ WL LVSHR+FMPRLL+ + GWPH QRLLVDL QFL PYLR A L P+ LY GTLRV+LVLLHDFPEFL +Y+ CDV+P +CIQ+RN+ILSA P +++L DP TPNLK+DLLPE+RE P I++ DAAL+ +K + +++++ FL L +LLLSP EAA GT NVPL Sbjct: 253 LTAFAGAFHNLQPLKVPGFSYVWLSLVSHRNFMPRLLIGNAQKGWPHAQRLLVDLFQFLEPYLRNAELAVPVHLLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPLNMRLPDPSTPNLKIDLLPEIREPPHILSEVDAALKLKLMKTDVDEYLKTRQQGSSFLAELKQRLLLSPSEAASSGTRYNVPL 456
BLAST of mRNA_M-pyrifera_M_contig108589.1811.1 vs. uniprot
Match: A0A834TN00_9FABA (CCR4-NOT transcription complex subunit 1 isoform X1 n=2 Tax=Caesalpinioideae TaxID=3804 RepID=A0A834TN00_9FABA) HSP 1 Score: 226 bits (575), Expect = 1.270e-69 Identity = 108/204 (52.94%), Postives = 149/204 (73.04%), Query Frame = 1 Query: 1 LACFSNLLHELQPQRLPGFAVSWLELVSHRSFMPRLLLVKGKAGWPHLQRLLVDLLQFLHPYLRAAALRDPIRQLYHGTLRVMLVLLHDFPEFLSEYYCCLCDVLPSTCIQLRNLILSAMPRHVQLHDPFTPNLKVDLLPEVREAPPIMAHYDAALEAAELKEPLSKFMESPASVPGFLPSLISQLLLSPEEAAEQGTSVNVPL 612 L +N H LQP ++PGF+ +WLEL+SHR+++P++L G+ GWP++QRLLVDL QF+ PYLR A L P+ LY GTLRV+LVLLHDFPEFL +Y+ CDV+P +CIQ+RN+ILSA PR ++L DP TPNLK+DLL E+ ++P I + DAAL+A ++K + +++++ FL L +LLLSP EA+ GT NVPL Sbjct: 9 LTALANAFHALQPLKVPGFSFAWLELISHRTYLPKMLTGNGQKGWPYIQRLLVDLFQFMEPYLRHAELGVPVHFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRSMRLPDPSTPNLKIDLLQEITQSPRIFSEVDAALKAKQMKADVDEYLKTRQQGSQFLSELKQKLLLSPNEASSAGTHYNVPL 212
BLAST of mRNA_M-pyrifera_M_contig108589.1811.1 vs. uniprot
Match: B9RD55_RICCO (Ccr4-not transcription complex, putative n=1 Tax=Ricinus communis TaxID=3988 RepID=B9RD55_RICCO) HSP 1 Score: 239 bits (610), Expect = 2.150e-69 Identity = 117/204 (57.35%), Postives = 153/204 (75.00%), Query Frame = 1 Query: 1 LACFSNLLHELQPQRLPGFAVSWLELVSHRSFMPRLLLVKGKAGWPHLQRLLVDLLQFLHPYLRAAALRDPIRQLYHGTLRVMLVLLHDFPEFLSEYYCCLCDVLPSTCIQLRNLILSAMPRHVQLHDPFTPNLKVDLLPEVREAPPIMAHYDAALEAAELKEPLSKFMESPASVPGFLPSLISQLLLSPEEAAEQGTSVNVPL 612 L F+N H LQP ++P F+ +WLELVSHRSFMP+LL + GWP++QRLLVDL QFL P+LR+A L P+ LY GTLRV+LVLLHDFPEFL +Y+ CDV+P +CIQ+RN+ILSA PR+++L DP TPNLK+DLLPE+REAP I++ DAAL+A ++K + +++++ FL L +LLLSP EAA GT NVPL Sbjct: 1954 LTAFANAFHNLQPLKVPAFSFAWLELVSHRSFMPKLLTGNAQKGWPYVQRLLVDLFQFLEPFLRSAELGMPVHFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIREAPHILSEVDAALKAKQMKADVDEYLKTRHQGSSFLSELKQRLLLSPSEAASAGTRYNVPL 2157 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108589.1811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig108589.1811.1 >prot_M-pyrifera_M_contig108589.1811.1 ID=prot_M-pyrifera_M_contig108589.1811.1|Name=mRNA_M-pyrifera_M_contig108589.1811.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=204bp LACFSNLLHELQPQRLPGFAVSWLELVSHRSFMPRLLLVKGKAGWPHLQRback to top mRNA from alignment at M-pyrifera_M_contig108589:1..612+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig108589.1811.1 ID=mRNA_M-pyrifera_M_contig108589.1811.1|Name=mRNA_M-pyrifera_M_contig108589.1811.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig108589:1..612+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig108589:1..612+ >mRNA_M-pyrifera_M_contig108589.1811.1 ID=mRNA_M-pyrifera_M_contig108589.1811.1|Name=mRNA_M-pyrifera_M_contig108589.1811.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1224bp|location=Sequence derived from alignment at M-pyrifera_M_contig108589:1..612+ (Macrocystis pyrifera P11B4 male)back to top |