mRNA_M-pyrifera_M_contig108586.1810.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108586.1810.1
Unique NamemRNA_M-pyrifera_M_contig108586.1810.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig108586.1810.1 vs. uniprot
Match: A0A8K1C9S6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C9S6_PYTOL)

HSP 1 Score: 72.0 bits (175), Expect = 2.820e-12
Identity = 37/104 (35.58%), Postives = 57/104 (54.81%), Query Frame = 1 
Query:   25 TFKSTVGDGLWMTASQFDEVMGPLVQDTDEHFARFDSTRTGRVDKFECFSAAFVFSDATTASASSPVRERARHVFGLFDFDGSNTLTATEVLLMLRATARGICK 336
            + + TVGD + +   +FDE+   + QD  EHF+ FDS   G+VD  E F+   V+         SP   +   +F LFDFD S  ++ TE++L++    RG+CK
Sbjct:   40 SLQETVGDKMTVNEEEFDEIFSLICQDPAEHFSLFDSWSLGKVDVMEVFAVIIVY-------CKSPFAVKIPLLFDLFDFDHSQEISQTELVLLMLCATRGLCK 136
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BLAST of mRNA_M-pyrifera_M_contig108586.1810.1 vs. uniprot
Match: A0A1V9ZWE2_9STRA (EF hand containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZWE2_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 9.080e-6
Identity = 29/88 (32.95%), Postives = 50/88 (56.82%), Query Frame = 1 
Query:   94 LVQDTDEHFARFDSTRTGRVDKFECFSAAFVFSDATTASASSPVRERARHVFGLFDFDGSNTLTATEVLLMLRATARGICKLSCLPFP 357
            + +DT  HF  FDST +G+VD  E F+   VF           +  + + +F LFDFD +N ++ TE+++++   +RG+ ++  LP P
Sbjct:  777 VCKDTMLHFDEFDSTFSGKVDALEVFAVLIVF-------CKESIDVKIQTLFTLFDFDQTNCISHTELIMLMLCCSRGLSRVVGLPRP 857
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108586.1810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A8K1C9S6_PYTOL2.820e-1235.58Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1V9ZWE2_9STRA9.080e-632.95EF hand containing protein n=1 Tax=Thraustotheca c... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108586contigM-pyrifera_M_contig108586:1..360 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.7
Seed ortholog evalue3.1e-14
Seed eggNOG ortholog4792.ETI32034
KEGG koko:K19932
Hectar predicted targeting categoryother localisation
EggNOG free text desc.EF hand containing protein
EggNOG OGs29SF0@1,2RXDP@2759,3QF0K@4776
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size360
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815595.822519-CDS-M-pyrifera_M_contig108586:0..3601622815595.822519-CDS-M-pyrifera_M_contig108586:0..360Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108586 1..360 -
1692277479.7303677-CDS-M-pyrifera_M_contig108586:0..3601692277479.7303677-CDS-M-pyrifera_M_contig108586:0..360Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108586 1..360 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108586.1810.1prot_M-pyrifera_M_contig108586.1810.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108586 1..360 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108586.1810.1

>prot_M-pyrifera_M_contig108586.1810.1 ID=prot_M-pyrifera_M_contig108586.1810.1|Name=mRNA_M-pyrifera_M_contig108586.1810.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
REVAEALTTFKSTVGDGLWMTASQFDEVMGPLVQDTDEHFARFDSTRTGR
VDKFECFSAAFVFSDATTASASSPVRERARHVFGLFDFDGSNTLTATEVL
LMLRATARGICKLSCLPFPS
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mRNA from alignment at M-pyrifera_M_contig108586:1..360-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108586.1810.1 ID=mRNA_M-pyrifera_M_contig108586.1810.1|Name=mRNA_M-pyrifera_M_contig108586.1810.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig108586:1..360- (Macrocystis pyrifera P11B4 male)
AGGGAGGTTGCAGAGGCGCTGACCACGTTCAAGTCCACCGTCGGCGACGG
CCTGTGGATGACAGCTAGTCAGTTTGATGAGGTGATGGGCCCGCTGGTCC
AAGATACGGATGAGCACTTCGCCCGTTTCGACAGCACTCGCACTGGCCGG
GTGGACAAGTTTGAGTGCTTCTCAGCCGCCTTTGTCTTCTCTGACGCCAC
CACCGCGTCGGCGTCATCCCCAGTCCGCGAGCGCGCTCGTCATGTCTTTG
GCCTGTTTGATTTCGACGGCAGCAACACGCTGACGGCCACGGAAGTGCTC
CTCATGTTGCGAGCCACCGCGCGAGGCATCTGCAAGCTCTCCTGCCTCCC
GTTCCCGTCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108586:1..360-

>mRNA_M-pyrifera_M_contig108586.1810.1 ID=mRNA_M-pyrifera_M_contig108586.1810.1|Name=mRNA_M-pyrifera_M_contig108586.1810.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig108586:1..360- (Macrocystis pyrifera P11B4 male)
AGGGAGGTTGCAGAGGCGCTGACCACGTTCAAGTCCACCGTCGGCGACGG
CCTGTGGATGACAGCTAGTCAGTTTGATGAGGTGATGGGCCCGCTGGTCC
AAGATACGGATGAGCACTTCGCCCGTTTCGACAGCACTCGCACTGGCCGG
GTGGACAAGTTTGAGTGCTTCTCAGCCGCCTTTGTCTTCTCTGACGCCAC
CACCGCGTCGGCGTCATCCCCAGTCCGCGAGCGCGCTCGTCATGTCTTTG
GCCTGTTTGATTTCGACGGCAGCAACACGCTGACGGCCACGGAAGTGCTC
CTCATGTTGCGAGCCACCGCGCGAGGCATCTGCAAGCTCTCCTGCCTCCC
GTTCCCGTCCAGGGAGGTTGCAGAGGCGCTGACCACGTTCAAGTCCACCG
TCGGCGACGGCCTGTGGATGACAGCTAGTCAGTTTGATGAGGTGATGGGC
CCGCTGGTCCAAGATACGGATGAGCACTTCGCCCGTTTCGACAGCACTCG
CACTGGCCGGGTGGACAAGTTTGAGTGCTTCTCAGCCGCCTTTGTCTTCT
CTGACGCCACCACCGCGTCGGCGTCATCCCCAGTCCGCGAGCGCGCTCGT
CATGTCTTTGGCCTGTTTGATTTCGACGGCAGCAACACGCTGACGGCCAC
GGAAGTGCTCCTCATGTTGCGAGCCACCGCGCGAGGCATCTGCAAGCTCT
CCTGCCTCCCGTTCCCGTCC
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