mRNA_M-pyrifera_M_contig108579.1807.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108579.1807.1
Unique NamemRNA_M-pyrifera_M_contig108579.1807.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig108579.1807.1 vs. uniprot
Match: A0A6A5C5G3_NAEFO (G domain-containing protein n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5C5G3_NAEFO)

HSP 1 Score: 183 bits (464), Expect = 2.640e-52
Identity = 86/147 (58.50%), Postives = 106/147 (72.11%), Query Frame = 1
Query:   43 KDIDSITSHFQASFNECILQVQKPNVLVCGVTGAGKSSLINAVFGSAVVAVGDGIPVTAHFVRIEPPDKPVVVYDSKGLEDGLSEEFIADTRAFFEGLRKRPRLQEHIHAIWYVVNAASGRFEAFEAQLIREVFAPTPVVIVLNKCD 483
            K+ + +   FQ  FN+C    +KPN+LV G+TGAGKSSL+NAVFG  +   G G+PVT HF + EP DKPVV+YDSKGLE    EEFI +T  FF  LR+ P +  HIH +WYVVN A GRFE FEA+++REVFAPTPV+ VLNK D
Sbjct:   39 KETEELVKSFQDHFNDCTKACKKPNILVAGITGAGKSSLVNAVFGEELARAGAGMPVTQHFQKYEPNDKPVVIYDSKGLEWNSHEEFIKETGKFFMELRQSPDVANHIHVVWYVVNTARGRFENFEAEVVREVFAPTPVIFVLNKSD 185          
BLAST of mRNA_M-pyrifera_M_contig108579.1807.1 vs. uniprot
Match: L8GJC7_ACACA (G domain-containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GJC7_ACACA)

HSP 1 Score: 180 bits (456), Expect = 3.280e-52
Identity = 84/145 (57.93%), Postives = 106/145 (73.10%), Query Frame = 1
Query:   25 VEQLIVKDIDSITSHFQASFNECILQVQKPNVLVCGVTGAGKSSLINAVFGSAVVAVGDGIPVTAHFVRIEPPDKPVVVYDSKGLEDGLSEEFIADTRAFFEGLRKRPRLQEHIHAIWYVVNAASGRFEAFEAQLIREVFAPTPV 459
            VE LI++D++ I   F+++F ECI  V+KPNVLV GVTGAGKSSL+NA+FG  +  VG G P+T HF R  P D PVVVYDSKGLE G  EEF+AD + F E ++ +P L +HIH IWYV+NA S R E FEA LI+E+FAP  +
Sbjct:   10 VESLIIEDLEYIAQQFESTFTECIANVKKPNVLVSGVTGAGKSSLVNAIFGEGMAKVGVGKPLTQHFSRYAPDDMPVVVYDSKGLEQGFHEEFVADAKEFLEKIKSQPELGDHIHIIWYVINAGSARIEPFEAFLIKEIFAPADI 154          
BLAST of mRNA_M-pyrifera_M_contig108579.1807.1 vs. uniprot
Match: D2VEP0_NAEGR (G domain-containing protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VEP0_NAEGR)

HSP 1 Score: 181 bits (459), Expect = 1.090e-51
Identity = 84/147 (57.14%), Postives = 106/147 (72.11%), Query Frame = 1
Query:   43 KDIDSITSHFQASFNECILQVQKPNVLVCGVTGAGKSSLINAVFGSAVVAVGDGIPVTAHFVRIEPPDKPVVVYDSKGLEDGLSEEFIADTRAFFEGLRKRPRLQEHIHAIWYVVNAASGRFEAFEAQLIREVFAPTPVVIVLNKCD 483
            ++ + +   FQ  FN+C    +KPN+LV G+TGAGKSSL+NAVFG  +   G G+PVT HF + EP DKPVV+YDSKGLE    EEFI +T  FF  LR+ P +  HIH +WYVVN A GRFE FEA+++REVF+PTPV+ VLNK D
Sbjct:   38 RETEELVKSFQDHFNDCTKACKKPNILVAGITGAGKSSLVNAVFGEELARAGAGMPVTQHFQKYEPSDKPVVIYDSKGLEWNSHEEFIKETGKFFMQLRQSPDVTNHIHVVWYVVNTARGRFENFEAEVVREVFSPTPVIFVLNKSD 184          
BLAST of mRNA_M-pyrifera_M_contig108579.1807.1 vs. uniprot
Match: A0A7S4I3C9_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I3C9_9EUKA)

HSP 1 Score: 142 bits (358), Expect = 8.660e-37
Identity = 66/158 (41.77%), Postives = 106/158 (67.09%), Query Frame = 1
Query:   25 VEQLIVKDIDSITSHFQASFNECILQVQKPNVLVCGVTGAGKSSLINAVFGSAVVAVGDGIPVTAHFVRIEPPDKPVVVYDSKGLEDGLS-EEFIADTRAFFEGLRKRPR---LQEHIHAIWYVVNAASGRFEAFEAQLIREVFAPTPVVIVLNKCDV 486
            VE+ + +D + +  HF+ ++++    +++P VL+ GV GAGKSS+IN +FGS +   G G PVT HF R EP +KP+++YDSKGLE G+  +EFI  TR++F  L        +++ I  +WY+VN+A+ RF+ FE Q+ +E+F   P++ +LNK D+
Sbjct:   36 VEEFLHEDAEKLMFHFKNAYDKIQDGLKRPKVLIAGVAGAGKSSIINTIFGSEMAKEGAGRPVTQHFQRFEPEEKPIILYDSKGLEVGMQLDEFIQSTRSYFTQLNDGEEERCMEQQIDVVWYIVNSAAARFQDFEEQICKELFKELPIIFILNKSDI 193          
BLAST of mRNA_M-pyrifera_M_contig108579.1807.1 vs. uniprot
Match: A0A6B2L5G6_9EUKA (G domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L5G6_9EUKA)

HSP 1 Score: 136 bits (342), Expect = 2.460e-35
Identity = 66/144 (45.83%), Postives = 93/144 (64.58%), Query Frame = 1
Query:   58 ITSHFQASFNECILQVQKPNVLVCGVTGAGKSSLINAVFGSAVVAVGDGIPVTAHFVRIEPPDKPVVVYDSKGLEDGLSEEFIADTRAFFEGLRKR--PRLQEHIHAIWYVVNAASGRFEAFEAQLIREVFAPTPVVIVLNKCD 483
            +   F  +F +   ++QKPNVL+ G+TGAGKSSL+N++FG+ +   G G+P+T HF + E  D  VV+YDSKGLE G  + FI +T  FF  L     P L + IH IWY+VN+A  R+E FE ++ RE+    P++ VLNK D
Sbjct:    8 LVKKFSKAFTKVSSRLQKPNVLITGITGAGKSSLVNSIFGNNIAETGTGVPLTQHFTKYESEDMRVVIYDSKGLEHGEYDNFIQNTNQFFNSLSPGAVPEL-DSIHVIWYIVNSAHSRWEPFEEKICREILNKAPLMFVLNKAD 150          
BLAST of mRNA_M-pyrifera_M_contig108579.1807.1 vs. uniprot
Match: A0A7S4IFI3_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IFI3_9EUKA)

HSP 1 Score: 137 bits (344), Expect = 8.890e-35
Identity = 68/169 (40.24%), Postives = 105/169 (62.13%), Query Frame = 1
Query:   25 VEQLIVKDIDSITSHFQASFNECILQVQKPNVLVCGVTGAGKSSLINAVFGSAVVAVGDGIPVTAHFVRIEPPDKPVVVYDSKGLEDGLS-EEFIADTRAFFE------GLRKRPR--------LQEHIHAIWYVVNAASGRFEAFEAQLIREVFAPTPVVIVLNKCDV 486
            VE+ I  D + +   F+ +F +   ++++P+VL+ G TGAGKSS+IN VFGS +   G G P+T +F +  P  +P+V++DSKGLE G+  +EF+  TR FF       G +  P         L++ +H +WYVVNAA  RF+ FE ++ RE+F   P++ +LNKCD+
Sbjct:   51 VEEFIHDDAEKLRCSFKNAFEKVYHEMRRPHVLIAGNTGAGKSSIINTVFGSEIAKEGAGRPITQNFTKYCPDKQPIVLFDSKGLEAGMQFDEFLLSTREFFHNNEEDIGAKHLPEEFRDDASGLEKRVHLVWYVVNAAGARFQDFEERICRELFGRLPIIFILNKCDI 219          
BLAST of mRNA_M-pyrifera_M_contig108579.1807.1 vs. uniprot
Match: A0A6A5C446_NAEFO (G domain-containing protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5C446_NAEFO)

HSP 1 Score: 135 bits (339), Expect = 9.150e-34
Identity = 58/152 (38.16%), Postives = 98/152 (64.47%), Query Frame = 1
Query:   31 QLIVKDIDSITSHFQASFNECILQVQKPNVLVCGVTGAGKSSLINAVFGSAVVAVGDGIPVTAHFVRIEPPDKPVVVYDSKGLEDG-LSEEFIADTRAFFEGLRKRPRLQEHIHAIWYVVNAASGRFEAFEAQLIREVFAPTPVVIVLNKCD 483
            ++I ++ + +    + + +    Q QKPN+L+ G +G+GKSSL+NAVFG ++  +G+G P+T  + +      PVV+YDS+G+E G + + F+ADTR FF+ +R+   L +H+H +WYV++    RF+ FEA+  +E     P++ VLNK D
Sbjct:  163 KIIYEEFNQLKQKLEQNCSTVTQQTQKPNILLLGGSGSGKSSLVNAVFGKSLAEIGEGKPITQRYTKYTGEHSPVVIYDSRGIEHGYIQDGFVADTRRFFKKIRQEESLSKHVHVVWYVIDLTQARFQPFEAEFCKEELKGIPIIFVLNKAD 314          
BLAST of mRNA_M-pyrifera_M_contig108579.1807.1 vs. uniprot
Match: UPI001CFEBF70 (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFEBF70)

HSP 1 Score: 134 bits (338), Expect = 1.240e-33
Identity = 58/152 (38.16%), Postives = 98/152 (64.47%), Query Frame = 1
Query:   31 QLIVKDIDSITSHFQASFNECILQVQKPNVLVCGVTGAGKSSLINAVFGSAVVAVGDGIPVTAHFVRIEPPDKPVVVYDSKGLEDG-LSEEFIADTRAFFEGLRKRPRLQEHIHAIWYVVNAASGRFEAFEAQLIREVFAPTPVVIVLNKCD 483
            ++I ++ + +    + + +    Q QKPN+L+ G +G+GKSSL+NAVFG ++  +G+G P+T  + +      PVV+YDS+G+E G + + F+ADTR FF+ +R+   L +H+H +WYV++    RF+ FEA+  +E     P++ VLNK D
Sbjct:  177 KIIYQEFNELKQKLEQNCSTVTQQTQKPNILLLGGSGSGKSSLVNAVFGKSLAEIGEGKPITQRYTKYTGEHSPVVIYDSRGIEHGYIQDGFVADTRRFFKKIRQEESLAKHVHVVWYVIDLTQARFQPFEAEFCKEELKGIPIIFVLNKAD 328          
BLAST of mRNA_M-pyrifera_M_contig108579.1807.1 vs. uniprot
Match: D2VF35_NAEGR (GTP binding protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VF35_NAEGR)

HSP 1 Score: 128 bits (322), Expect = 1.730e-31
Identity = 57/152 (37.50%), Postives = 94/152 (61.84%), Query Frame = 1
Query:   31 QLIVKDIDSITSHFQASFNECILQVQKPNVLVCGVTGAGKSSLINAVFGSAVVAVGDGIPVTAHFVRIEPPDKPVVVYDSKGLEDG-LSEEFIADTRAFFEGLRKRPRLQEHIHAIWYVVNAASGRFEAFEAQLIREVFAPTPVVIVLNKCD 483
            ++I   ++ +     +  +    +  KPN+L+ G +G+GKSSL+NAVFG ++  +G+G PVT  + +      PVV+YDS+G+E G + + F+ADTR FF+ +R    L +H+H +WYV++    RF+ FEA+  R+     P++ VLNK D
Sbjct:  163 RIIYSQVNQMKEQLSSDCSTIAEKTSKPNILLLGGSGSGKSSLVNAVFGKSLAEIGEGKPVTQQYTKYAGEHSPVVIYDSRGIEHGYIQDGFVADTRRFFKKIRGEKDLAKHVHVVWYVLDLTQARFQPFEAEFCRDELKGIPIIFVLNKAD 314          
BLAST of mRNA_M-pyrifera_M_contig108579.1807.1 vs. uniprot
Match: A0A6B2L5C1_9EUKA (G domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L5C1_9EUKA)

HSP 1 Score: 125 bits (315), Expect = 2.140e-31
Identity = 62/127 (48.82%), Postives = 84/127 (66.14%), Query Frame = 1
Query:  109 KPNVLVCGVTGAGKSSLINAVFGSAVVAVGDGIPVTAHFVRIEPPDKPVVVYDSKGLEDGLSEEFIADTRAFFEGLRKRPRLQ-EHIHAIWYVVNAASGRFEAFEAQLIREVFAPTPVVIVLNKCDV 486
            KPNVL+ G+TGAGKSSLINA+FG  V   G G+P+T HF + E  D  VV+YDSKGLE G  E+F+  T  FFE  +     + + IH +WY+VN+A  R+E FE  + R++    P++ VLNK D+
Sbjct:    9 KPNVLITGITGAGKSSLINAIFGKNVAETGTGVPLTQHFTKYESDDMRVVIYDSKGLEHGEFEDFMNTTDHFFESHKPGTVSETDTIHVVWYIVNSAHSRWEPFEEVICRKLLNRAPLMFVLNKADI 135          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108579.1807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A5C5G3_NAEFO2.640e-5258.50G domain-containing protein n=2 Tax=Naegleria TaxI... [more]
L8GJC7_ACACA3.280e-5257.93G domain-containing protein n=1 Tax=Acanthamoeba c... [more]
D2VEP0_NAEGR1.090e-5157.14G domain-containing protein n=1 Tax=Naegleria grub... [more]
A0A7S4I3C9_9EUKA8.660e-3741.77Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A6B2L5G6_9EUKA2.460e-3545.83G domain-containing protein n=1 Tax=Arcella interm... [more]
A0A7S4IFI3_9EUKA8.890e-3540.24Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A6A5C446_NAEFO9.150e-3438.16G domain-containing protein n=1 Tax=Naegleria fowl... [more]
UPI001CFEBF701.240e-3338.16uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
D2VF35_NAEGR1.730e-3137.50GTP binding protein n=1 Tax=Naegleria gruberi TaxI... [more]
A0A6B2L5C1_9EUKA2.140e-3148.82G domain-containing protein n=1 Tax=Arcella interm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108579contigM-pyrifera_M_contig108579:10..495 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score109.4
Seed ortholog evalue1.6e-21
Seed eggNOG ortholog1173024.KI912148_gene3175
KEGG koko:K06946
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein domain associated with
EggNOG OGs1G3RU@1117,COG3596@1,COG3596@2,COG3597@1,COG3597@2
COG Functional cat.S
Best tax levelCyanobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size486
Cds size486
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815595.7132785-CDS-M-pyrifera_M_contig108579:9..4951622815595.7132785-CDS-M-pyrifera_M_contig108579:9..495Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108579 10..495 +
1692277479.6842787-CDS-M-pyrifera_M_contig108579:9..4951692277479.6842787-CDS-M-pyrifera_M_contig108579:9..495Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108579 10..495 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108579.1807.1prot_M-pyrifera_M_contig108579.1807.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108579 10..495 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108579.1807.1

>prot_M-pyrifera_M_contig108579.1807.1 ID=prot_M-pyrifera_M_contig108579.1807.1|Name=mRNA_M-pyrifera_M_contig108579.1807.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=162bp
MNSITGRTVEQLIVKDIDSITSHFQASFNECILQVQKPNVLVCGVTGAGK
SSLINAVFGSAVVAVGDGIPVTAHFVRIEPPDKPVVVYDSKGLEDGLSEE
FIADTRAFFEGLRKRPRLQEHIHAIWYVVNAASGRFEAFEAQLIREVFAP
TPVVIVLNKCDV
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mRNA from alignment at M-pyrifera_M_contig108579:10..495+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108579.1807.1 ID=mRNA_M-pyrifera_M_contig108579.1807.1|Name=mRNA_M-pyrifera_M_contig108579.1807.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig108579:10..495+ (Macrocystis pyrifera P11B4 male)
ATGAACAGCATCACAGGGCGGACGGTAGAGCAGCTGATCGTGAAGGACAT CGACTCGATCACGAGCCACTTCCAGGCGTCGTTCAACGAGTGCATACTGC AGGTGCAGAAGCCGAATGTGTTGGTGTGCGGCGTGACGGGCGCGGGCAAG AGCTCCCTCATCAACGCTGTGTTTGGCTCTGCAGTGGTGGCGGTGGGCGA CGGCATTCCCGTGACTGCACACTTTGTGCGTATCGAGCCGCCCGACAAGC CCGTGGTCGTCTACGACAGCAAAGGCCTCGAGGACGGCCTCAGCGAGGAG TTCATTGCCGACACCCGCGCATTTTTCGAGGGTCTGCGCAAGCGCCCGCG CCTCCAGGAGCACATTCACGCCATCTGGTACGTCGTCAACGCCGCCTCCG GCCGCTTCGAGGCATTCGAGGCGCAGCTCATCCGCGAGGTCTTCGCGCCC ACGCCTGTCGTCATCGTACTCAACAAGTGCGACGTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108579:10..495+

>mRNA_M-pyrifera_M_contig108579.1807.1 ID=mRNA_M-pyrifera_M_contig108579.1807.1|Name=mRNA_M-pyrifera_M_contig108579.1807.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=972bp|location=Sequence derived from alignment at M-pyrifera_M_contig108579:10..495+ (Macrocystis pyrifera P11B4 male)
ATGAACAGCATCACAGGGCGGACGGTAGAGCAGCTGATCGTGAAGGACAT
CGACTCGATCACGAGCCACTTCCAGGCGTCGTTCAACGAGTGCATACTGC
AGGTGCAGAAGCCGAATGTGTTGGTGTGCGGCGTGACGGGCGCGGGCAAG
AGCTCCCTCATCAACGCTGTGTTTGGCTCTGCAGTGGTGGCGGTGGGCGA
CGGCATTCCCGTGACTGCACACTTTGTGCGTATCGAGCCGCCCGACAAGC
CCGTGGTCGTCTACGACAGCAAAGGCCTCGAGGACGGCCTCAGCGAGGAG
TTCATTGCCGACACCCGCGCATTTTTCGAGGGTCTGCGCAAGCGCCCGCG
CCTCCAGGAGCACATTCACGCCATCTGGTACGTCGTCAACGCCGCCTCCG
GCCGCTTCGAGGCATTCGAGGCGCAGCTCATCCGCGAGGTCTTCGCGCCC
ACGCCTGTCGTCATCGTACTCAACAAGTGCGACGTTATGAACAGCATCAC
AGGGCGGACGGTAGAGCAGCTGATCGTGAAGGACATCGACTCGATCACGA
GCCACTTCCAGGCGTCGTTCAACGAGTGCATACTGCAGGTGCAGAAGCCG
AATGTGTTGGTGTGCGGCGTGACGGGCGCGGGCAAGAGCTCCCTCATCAA
CGCTGTGTTTGGCTCTGCAGTGGTGGCGGTGGGCGACGGCATTCCCGTGA
CTGCACACTTTGTGCGTATCGAGCCGCCCGACAAGCCCGTGGTCGTCTAC
GACAGCAAAGGCCTCGAGGACGGCCTCAGCGAGGAGTTCATTGCCGACAC
CCGCGCATTTTTCGAGGGTCTGCGCAAGCGCCCGCGCCTCCAGGAGCACA
TTCACGCCATCTGGTACGTCGTCAACGCCGCCTCCGGCCGCTTCGAGGCA
TTCGAGGCGCAGCTCATCCGCGAGGTCTTCGCGCCCACGCCTGTCGTCAT
CGTACTCAACAAGTGCGACGTT
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