mRNA_M-pyrifera_M_contig108576.1806.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108576.1806.1
Unique NamemRNA_M-pyrifera_M_contig108576.1806.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig108576.1806.1 vs. uniprot
Match: A0A7S4IP51_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IP51_9EUKA)

HSP 1 Score: 230 bits (586), Expect = 1.430e-69
Identity = 105/140 (75.00%), Postives = 125/140 (89.29%), Query Frame = 1 
Query:    1 DKHQVVKYDAIIELLLAAGYFRARIPALSPFDKVIGGLTWCITSSQVDIDVDLLFQENANIGLQIKLGEAIEKSLARMRCPHPLQSHQIRGLDYINIFPVIQWLVKKVMEVRKETGDLLRMISEWQFGRSYHLPTDEDLE 420
            D+ QV KYDAI+ELLLAAGYFRARI  LS FDKVIGGLTWCI+SSQVD+D+DL FQE++ +G++I+LGE IEK+L RMRCPHPL+SHQIRGLD+I+I PVIQWLV KV+EVRKETGDLLR +SEWQFG+ Y LP+DE+ E
Sbjct:   45 DEDQVAKYDAIVELLLAAGYFRARISTLSHFDKVIGGLTWCISSSQVDVDIDLFFQEDSTMGMKIQLGEVIEKTLTRMRCPHPLRSHQIRGLDFISIHPVIQWLVTKVLEVRKETGDLLRTVSEWQFGKKYSLPSDEEFE 184
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BLAST of mRNA_M-pyrifera_M_contig108576.1806.1 vs. uniprot
Match: A0A7S4NLZ3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4NLZ3_9EUKA)

HSP 1 Score: 186 bits (472), Expect = 1.470e-56
Identity = 87/140 (62.14%), Postives = 111/140 (79.29%), Query Frame = 1 
Query:    1 DKHQVVKYDAIIELLLAAGYFRARIPALSPFDKVIGGLTWCITSSQVDIDVDLLFQENANIGLQIKLGEAIEKSLARMRCPHPLQSHQIRGLDYINIFPVIQWLVKKVMEVRKETGDLLRMISEWQFGRSYHLPTDEDLE 420
            D  Q   Y++I+ELLLAAGYFRARI  L PFDKVIGGL W I +S VD+DVDL F++ A +G +IKLGE I K+L +M+CPHPLQS+QIRGLD +NIFPV+QWLVK+V+E R+E GD+LR  S +QF R+  LP+D++ E
Sbjct:   36 DAEQQKNYESILELLLAAGYFRARIKGLRPFDKVIGGLVWSIMNSAVDVDVDLFFEDGAKLGQEIKLGEDIIKTLRKMKCPHPLQSNQIRGLDCVNIFPVMQWLVKRVLETREEMGDVLRTFSVYQFHRTDQLPSDKERE 175
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BLAST of mRNA_M-pyrifera_M_contig108576.1806.1 vs. uniprot
Match: A0A452UBK7_URSMA (Coiled-coil domain-containing protein 93 n=1 Tax=Ursus maritimus TaxID=29073 RepID=A0A452UBK7_URSMA)

HSP 1 Score: 180 bits (457), Expect = 2.870e-55
Identity = 83/139 (59.71%), Postives = 106/139 (76.26%), Query Frame = 1 
Query:    1 DKHQVVKYDAIIELLLAAGYFRARIPALSPFDKVIGGLTWCITSSQVDIDVDLLFQENANIGLQIKLGEAIEKSLARMRCPHPLQSHQIRGLDYINIFPVIQWLVKKVMEVRKETGDLLRMISEWQFGRSYHLPTDEDL 417
            D+ Q VK   I+ELL+AAGYFRARI  LSPFDKV+GG+TWCIT+   DIDVDLLFQEN+ IG +I L E I   L RM+CPH L+ HQI+G+D+I+IFPV+QWLVK+ +E ++E GD +R  S  QF ++Y LP D+D 
Sbjct:   22 DEEQNVKLTEILELLVAAGYFRARIKGLSPFDKVVGGMTWCITTCSFDIDVDLLFQENSTIGQKIALSEKIVSVLPRMKCPHQLEPHQIQGMDFIHIFPVVQWLVKRAIETKEEMGDYIRSYSISQFQKTYSLPEDDDF 160
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BLAST of mRNA_M-pyrifera_M_contig108576.1806.1 vs. uniprot
Match: Q9D652_MOUSE (Coiled-coil domain-containing protein 93 n=5 Tax=Boreoeutheria TaxID=1437010 RepID=Q9D652_MOUSE)

HSP 1 Score: 180 bits (456), Expect = 3.060e-55
Identity = 82/139 (58.99%), Postives = 106/139 (76.26%), Query Frame = 1 
Query:    1 DKHQVVKYDAIIELLLAAGYFRARIPALSPFDKVIGGLTWCITSSQVDIDVDLLFQENANIGLQIKLGEAIEKSLARMRCPHPLQSHQIRGLDYINIFPVIQWLVKKVMEVRKETGDLLRMISEWQFGRSYHLPTDEDL 417
            D+ Q VK   I+ELL+AAGYFRARI  LSPFDKV+GG+TWCIT+   D+DVDLLFQEN+ IG +I L E I   L RM+CPH L+ HQI+G+D+I+IFPV+QWLVK+ +E ++E GD +R  S  QF ++Y LP D+D 
Sbjct:   20 DEEQNVKLTEILELLVAAGYFRARIKGLSPFDKVVGGMTWCITTCSFDVDVDLLFQENSTIGQKIALSEKIVSVLPRMKCPHQLEPHQIQGMDFIHIFPVVQWLVKRAIETKEEMGDYIRSYSISQFQKTYSLPEDDDF 158
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BLAST of mRNA_M-pyrifera_M_contig108576.1806.1 vs. uniprot
Match: A0A7J7WFS8_MYOMY (Coiled-coil domain-containing protein 93 n=2 Tax=Myotis myotis TaxID=51298 RepID=A0A7J7WFS8_MYOMY)

HSP 1 Score: 180 bits (456), Expect = 6.710e-55
Identity = 82/139 (58.99%), Postives = 106/139 (76.26%), Query Frame = 1 
Query:    1 DKHQVVKYDAIIELLLAAGYFRARIPALSPFDKVIGGLTWCITSSQVDIDVDLLFQENANIGLQIKLGEAIEKSLARMRCPHPLQSHQIRGLDYINIFPVIQWLVKKVMEVRKETGDLLRMISEWQFGRSYHLPTDEDL 417
            D+ Q VK   I+ELL+AAGYFRARI  LSPFDKV+GG+TWCIT+   D+DVDLLFQEN+ IG +I L E I   L RM+CPH L+ HQI+G+D+I+IFPV+QWLVK+ +E ++E GD +R  S  QF ++Y LP D+D 
Sbjct:   20 DEEQNVKLTEILELLVAAGYFRARIKGLSPFDKVVGGMTWCITTCNFDVDVDLLFQENSTIGQKIALSEKIVSVLPRMKCPHQLEPHQIQGMDFIHIFPVVQWLVKRAIETKEEMGDYIRAYSISQFQKTYSLPEDDDF 158
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BLAST of mRNA_M-pyrifera_M_contig108576.1806.1 vs. uniprot
Match: A0A455BFS4_PHYMC (Coiled-coil domain-containing protein 93 n=1 Tax=Physeter macrocephalus TaxID=9755 RepID=A0A455BFS4_PHYMC)

HSP 1 Score: 182 bits (461), Expect = 1.610e-54
Identity = 83/139 (59.71%), Postives = 106/139 (76.26%), Query Frame = 1 
Query:    1 DKHQVVKYDAIIELLLAAGYFRARIPALSPFDKVIGGLTWCITSSQVDIDVDLLFQENANIGLQIKLGEAIEKSLARMRCPHPLQSHQIRGLDYINIFPVIQWLVKKVMEVRKETGDLLRMISEWQFGRSYHLPTDEDL 417
            D+ Q VK   I+ELL+AAGYFRARI  LSPFDKV+GG+TWCIT+   D+DVDLLFQEN+ IG +I L E I   L RM+CPH L+ HQI+G+D+I+IFPV+QWLVK+ +E R+E GD +R  S  QF ++Y LP D+D 
Sbjct:  120 DEEQNVKLTEILELLVAAGYFRARIKGLSPFDKVVGGMTWCITTCNFDVDVDLLFQENSTIGQKIALSEKIVSVLPRMKCPHQLEPHQIQGMDFIHIFPVVQWLVKRAIETREEMGDYIRSYSTSQFQKAYSLPEDDDF 258
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BLAST of mRNA_M-pyrifera_M_contig108576.1806.1 vs. uniprot
Match: UPI000719B0E0 (coiled-coil domain-containing protein 93-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719B0E0)

HSP 1 Score: 181 bits (459), Expect = 1.880e-54
Identity = 84/140 (60.00%), Postives = 105/140 (75.00%), Query Frame = 1 
Query:    1 DKHQVVKYDAIIELLLAAGYFRARIPALSPFDKVIGGLTWCITSSQVDIDVDLLFQENANIGLQIKLGEAIEKSLARMRCPHPLQSHQIRGLDYINIFPVIQWLVKKVMEVRKETGDLLRMISEWQFGRSYHLPTDEDLE 420
            D+ Q VK    IELLLAAGYFRARI  LSPFDKV+GG+TWCIT+   D+DVDLLFQEN+ IG +I L E I   L RM+CPHP++ HQI+GLD+I+IFPV+QWLVK+ +E R+E GD +R  S  QF +S+  P D + E
Sbjct:   41 DEEQSVKLQETIELLLAAGYFRARIKGLSPFDKVVGGMTWCITTCNFDVDVDLLFQENSTIGQKIALTEKIVSVLPRMKCPHPIEPHQIQGLDFIHIFPVVQWLVKRAIETREEMGDYIRSYSISQFNKSHKAPEDVEFE 180
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BLAST of mRNA_M-pyrifera_M_contig108576.1806.1 vs. uniprot
Match: Q8BUU2_MOUSE (Coiled-coil domain-containing protein 93 n=1 Tax=Mus musculus TaxID=10090 RepID=Q8BUU2_MOUSE)

HSP 1 Score: 180 bits (456), Expect = 2.640e-54
Identity = 82/139 (58.99%), Postives = 106/139 (76.26%), Query Frame = 1 
Query:    1 DKHQVVKYDAIIELLLAAGYFRARIPALSPFDKVIGGLTWCITSSQVDIDVDLLFQENANIGLQIKLGEAIEKSLARMRCPHPLQSHQIRGLDYINIFPVIQWLVKKVMEVRKETGDLLRMISEWQFGRSYHLPTDEDL 417
            D+ Q VK   I+ELL+AAGYFRARI  LSPFDKV+GG+TWCIT+   D+DVDLLFQEN+ IG +I L E I   L RM+CPH L+ HQI+G+D+I+IFPV+QWLVK+ +E ++E GD +R  S  QF ++Y LP D+D 
Sbjct:   20 DEEQNVKLTEILELLVAAGYFRARIKGLSPFDKVVGGMTWCITTCSFDVDVDLLFQENSTIGQKIALSEKIVSVLPRMKCPHQLEPHQIQGMDFIHIFPVVQWLVKRAIETKEEMGDYIRSYSISQFQKTYSLPEDDDF 158
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BLAST of mRNA_M-pyrifera_M_contig108576.1806.1 vs. uniprot
Match: A0A6I9NJG0_9TELE (Coiled-coil domain-containing protein 93 n=2 Tax=Notothenia coriiceps TaxID=8208 RepID=A0A6I9NJG0_9TELE)

HSP 1 Score: 179 bits (455), Expect = 2.950e-54
Identity = 85/139 (61.15%), Postives = 106/139 (76.26%), Query Frame = 1 
Query:    1 DKHQVVKYDAIIELLLAAGYFRARIPALSPFDKVIGGLTWCITSSQVDIDVDLLFQENANIGLQIKLGEAIEKSLARMRCPHPLQSHQIRGLDYINIFPVIQWLVKKVMEVRKETGDLLRMISEWQFGRSYHLPTDEDL 417
            D+ Q +K   I+ELLLAAGYFRARI  LSPFDKV+GG+TWCIT+   DIDVDLLFQEN+ IG +I L E I   L +M+CPH L+ HQI+GLD+I+IFPVIQWLVK+ +E R+E GD +R  S  QF +S+ LP DE+ 
Sbjct:   48 DEEQSIKLAEILELLLAAGYFRARIKGLSPFDKVVGGMTWCITTCNFDIDVDLLFQENSTIGQKISLTEKIVSVLPKMKCPHCLEPHQIQGLDFIHIFPVIQWLVKRAIETREEMGDSVRAYSICQFQKSHSLPEDEEF 186
[Close]
BLAST of mRNA_M-pyrifera_M_contig108576.1806.1 vs. uniprot
Match: UPI0012ED036E (coiled-coil domain-containing protein 93-like isoform X1 n=3 Tax=Anarrhichthys ocellatus TaxID=433405 RepID=UPI0012ED036E)

HSP 1 Score: 180 bits (456), Expect = 6.510e-54
Identity = 85/139 (61.15%), Postives = 107/139 (76.98%), Query Frame = 1 
Query:    1 DKHQVVKYDAIIELLLAAGYFRARIPALSPFDKVIGGLTWCITSSQVDIDVDLLFQENANIGLQIKLGEAIEKSLARMRCPHPLQSHQIRGLDYINIFPVIQWLVKKVMEVRKETGDLLRMISEWQFGRSYHLPTDEDL 417
            D+ Q +K   I+ELLLAAGYFRARI  LSPFDKV+GG+TWCIT+   DIDVDLLFQEN+ IG +I L E I   L +M+CPH L+ HQI+GLD+I+IFPVIQWLVK+ +E R+E GD +R  S  QF +++ LP DE+L
Sbjct:   35 DEEQSIKLAEILELLLAAGYFRARIKGLSPFDKVVGGMTWCITTCNFDIDVDLLFQENSTIGQKIALTEKIVSVLPKMKCPHRLEPHQIQGLDFIHIFPVIQWLVKRAIETREEMGDYVRAYSISQFQKTHSLPEDEEL 173
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108576.1806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4IP51_9EUKA1.430e-6975.00Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A7S4NLZ3_9EUKA1.470e-5662.14Hypothetical protein (Fragment) n=1 Tax=Paramoeba ... [more]
A0A452UBK7_URSMA2.870e-5559.71Coiled-coil domain-containing protein 93 n=1 Tax=U... [more]
Q9D652_MOUSE3.060e-5558.99Coiled-coil domain-containing protein 93 n=5 Tax=B... [more]
A0A7J7WFS8_MYOMY6.710e-5558.99Coiled-coil domain-containing protein 93 n=2 Tax=M... [more]
A0A455BFS4_PHYMC1.610e-5459.71Coiled-coil domain-containing protein 93 n=1 Tax=P... [more]
UPI000719B0E01.880e-5460.00coiled-coil domain-containing protein 93-like n=1 ... [more]
Q8BUU2_MOUSE2.640e-5458.99Coiled-coil domain-containing protein 93 n=1 Tax=M... [more]
A0A6I9NJG0_9TELE2.950e-5461.15Coiled-coil domain-containing protein 93 n=2 Tax=N... [more]
UPI0012ED036E6.510e-5461.15coiled-coil domain-containing protein 93-like isof... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108576contigM-pyrifera_M_contig108576:6..607 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score183.0
Seed ortholog evalue1.1e-43
Seed eggNOG ortholog9767.XP_007169345.1
Preferred nameCCDC93
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0006810,GO:0006892,GO:0006893,GO:0008150,GO:0016192,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0048193,GO:0051179,GO:0051234,GO:0098876
EggNOG free text desc.Coiled-coil domain-containing protein 93
EggNOG OGs38GZI@33154,3BARN@33208,3CUTD@33213,3J5XD@40674,47ZVU@7711,496PG@7742,4J3ZE@91561,KOG2701@1,KOG2701@2759
COG Functional cat.S
Best tax levelCetartiodactyla
Best eggNOG OGNA|NA|NA
Exons2
Model size450
Cds size450
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815595.6505587-CDS-M-pyrifera_M_contig108576:5..3171622815595.6505587-CDS-M-pyrifera_M_contig108576:5..317Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108576 6..317 -
1692277479.6614814-CDS-M-pyrifera_M_contig108576:5..3171692277479.6614814-CDS-M-pyrifera_M_contig108576:5..317Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108576 6..317 -
1622815595.663171-CDS-M-pyrifera_M_contig108576:469..6071622815595.663171-CDS-M-pyrifera_M_contig108576:469..607Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108576 470..607 -
1692277479.6737413-CDS-M-pyrifera_M_contig108576:469..6071692277479.6737413-CDS-M-pyrifera_M_contig108576:469..607Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108576 470..607 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108576.1806.1prot_M-pyrifera_M_contig108576.1806.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108576 6..607 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108576.1806.1

>prot_M-pyrifera_M_contig108576.1806.1 ID=prot_M-pyrifera_M_contig108576.1806.1|Name=mRNA_M-pyrifera_M_contig108576.1806.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=150bp
DKHQVVKYDAIIELLLAAGYFRARIPALSPFDKVIGGLTWCITSSQVDID
VDLLFQENANIGLQIKLGEAIEKSLARMRCPHPLQSHQIRGLDYINIFPV
IQWLVKKVMEVRKETGDLLRMISEWQFGRSYHLPTDEDLEVHPTFHSPCS
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mRNA from alignment at M-pyrifera_M_contig108576:6..607-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108576.1806.1 ID=mRNA_M-pyrifera_M_contig108576.1806.1|Name=mRNA_M-pyrifera_M_contig108576.1806.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=602bp|location=Sequence derived from alignment at M-pyrifera_M_contig108576:6..607- (Macrocystis pyrifera P11B4 male)
GATAAGCACCAGGTGGTGAAGTATGACGCCATCATTGAGCTGCTCCTTGC
TGCTGGCTACTTCAGGGCCCGTATCCCCGCCCTCTCGCCATTCGACAAGG
TCATTGGAGGCCTCACATGGTGCATCACGTCCTCACAGGTTCGCTACTCC
CGTCCTTCCATGCTTCGTCTCTCTCGCTCTCTCCTTCTCTGTCTCGCATT
CTCTTTCTTCAACAACCTGGTCCCCCACGCTCTGTCATATCAGCCCTGCC
GTTTCCGCGTCCCCCAAGTTTTGAGGTTGACTTGAGCCAGGTTGATATCG
ACGTGGATCTTCTCTTCCAGGAGAACGCAAACATTGGTCTGCAGATCAAG
CTGGGAGAGGCCATCGAGAAGTCGCTGGCCCGCATGCGGTGCCCACACCC
TCTCCAGTCCCATCAGATTCGTGGCCTCGACTACATCAACATCTTCCCCG
TCATCCAGTGGCTTGTGAAGAAGGTGATGGAGGTTCGCAAGGAGACAGGA
GACCTCCTTCGTATGATCTCTGAGTGGCAGTTCGGCCGCTCCTACCACCT
CCCCACCGACGAGGATCTCGAGGTCCACCCTACCTTTCACTCCCCCTGCA
GC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108576:6..607-

>mRNA_M-pyrifera_M_contig108576.1806.1 ID=mRNA_M-pyrifera_M_contig108576.1806.1|Name=mRNA_M-pyrifera_M_contig108576.1806.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=900bp|location=Sequence derived from alignment at M-pyrifera_M_contig108576:6..607- (Macrocystis pyrifera P11B4 male)
GATAAGCACCAGGTGGTGAAGTATGACGCCATCATTGAGCTGCTCCTTGC
TGCTGGCTACTTCAGGGCCCGTATCCCCGCCCTCTCGCCATTCGACAAGG
TCATTGGAGGCCTCACATGGTGCATCACGTCCTCACAGGATAAGCACCAG
GTGGTGAAGTATGACGCCATCATTGAGCTGCTCCTTGCTGCTGGCTACTT
CAGGGCCCGTATCCCCGCCCTCTCGCCATTCGACAAGGTCATTGGAGGCC
TCACATGGTGCATCACGTCCTCACAGGTTGATATCGACGTGGATCTTCTC
TTCCAGGAGAACGCAAACATTGGTCTGCAGATCAAGCTGGGAGAGGCCAT
CGAGAAGTCGCTGGCCCGCATGCGGTGCCCACACCCTCTCCAGTCCCATC
AGATTCGTGGCCTCGACTACATCAACATCTTCCCCGTCATCCAGTGGCTT
GTGAAGAAGGTGATGGAGGTTCGCAAGGAGACAGGAGACCTCCTTCGTAT
GATCTCTGAGTGGCAGTTCGGCCGCTCCTACCACCTCCCCACCGACGAGG
ATCTCGAGGTCCACCCTACCTTTCACTCCCCCTGCAGCGTTGATATCGAC
GTGGATCTTCTCTTCCAGGAGAACGCAAACATTGGTCTGCAGATCAAGCT
GGGAGAGGCCATCGAGAAGTCGCTGGCCCGCATGCGGTGCCCACACCCTC
TCCAGTCCCATCAGATTCGTGGCCTCGACTACATCAACATCTTCCCCGTC
ATCCAGTGGCTTGTGAAGAAGGTGATGGAGGTTCGCAAGGAGACAGGAGA
CCTCCTTCGTATGATCTCTGAGTGGCAGTTCGGCCGCTCCTACCACCTCC
CCACCGACGAGGATCTCGAGGTCCACCCTACCTTTCACTCCCCCTGCAGC
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