mRNA_M-pyrifera_M_contig108561.1803.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108561.1803.1
Unique NamemRNA_M-pyrifera_M_contig108561.1803.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig108561.1803.1 vs. uniprot
Match: X0YCD3_9ZZZZ (Fido domain-containing protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0YCD3_9ZZZZ)

HSP 1 Score: 122 bits (306), Expect = 8.080e-33
Identity = 54/73 (73.97%), Postives = 62/73 (84.93%), Query Frame = 1
Query:    1 RAALGHYLFVFIHPYMDGNGRLARFILNTMLASGGYPWTIVRVDNRSQYIDSLETTHLGDGIEKFCQFIVKEM 219
            RA LGHY+FVFIHP+MDGNGR+ARFILNTMLASGGYPWT+V+V  R QYI+SLE TH+ D IE F  FI+ EM
Sbjct:  171 RAVLGHYIFVFIHPFMDGNGRIARFILNTMLASGGYPWTVVQVSRRKQYINSLEATHVDDNIESFTDFIIDEM 243          
BLAST of mRNA_M-pyrifera_M_contig108561.1803.1 vs. uniprot
Match: A0A2E3MG77_9GAMM (Cell filamentation protein Fic n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A2E3MG77_9GAMM)

HSP 1 Score: 126 bits (317), Expect = 1.400e-32
Identity = 57/73 (78.08%), Postives = 63/73 (86.30%), Query Frame = 1
Query:    1 RAALGHYLFVFIHPYMDGNGRLARFILNTMLASGGYPWTIVRVDNRSQYIDSLETTHLGDGIEKFCQFIVKEM 219
            RA LGHY+FVFIHPYMDGNGR+ARFILN MLASGGYPWTIV+V  R QYIDSLE TH  + I KFCQFI++EM
Sbjct:  430 RAVLGHYIFVFIHPYMDGNGRIARFILNAMLASGGYPWTIVQVSRRKQYIDSLEYTHTENSIAKFCQFIIEEM 502          
BLAST of mRNA_M-pyrifera_M_contig108561.1803.1 vs. uniprot
Match: A0A1G0GR73_9GAMM (Fido domain-containing protein n=1 Tax=Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_36_30 TaxID=1798275 RepID=A0A1G0GR73_9GAMM)

HSP 1 Score: 115 bits (288), Expect = 1.770e-28
Identity = 51/74 (68.92%), Postives = 61/74 (82.43%), Query Frame = 1
Query:    1 RAALGHYLFVFIHPYMDGNGRLARFILNTMLASGGYPWTIVRVDNRSQYIDSLETTHLGDGIEKFCQFIVKEMQ 222
            RA LGHY+FVFIHPYMDGNGR+ARFILNTMLASGGYPW++V+V  R +YID+LET H    I+ F  FI+ EM+
Sbjct:  429 RAILGHYIFVFIHPYMDGNGRIARFILNTMLASGGYPWSVVQVARRKEYIDALETVHTKSDIKPFVHFIIDEMK 502          
BLAST of mRNA_M-pyrifera_M_contig108561.1803.1 vs. uniprot
Match: A0A3D3HUQ1_9BACT (Fido domain-containing protein (Fragment) n=1 Tax=Candidatus Kerfeldbacteria bacterium TaxID=2053565 RepID=A0A3D3HUQ1_9BACT)

HSP 1 Score: 106 bits (265), Expect = 4.020e-28
Identity = 47/75 (62.67%), Postives = 59/75 (78.67%), Query Frame = 1
Query:    1 RAALGHYLFVFIHPYMDGNGRLARFILNTMLASGGYPWTIVRVDNRSQYIDSLETTHLGDGIEKFCQFIVKEMQE 225
            RA LGH+LFVFIHPY DGNGR+ RF+LN MLASGGY WT+VRV  R  Y+D+LE+  +   I+ F +F+V+EMQE
Sbjct:   32 RAVLGHHLFVFIHPYFDGNGRIGRFLLNAMLASGGYQWTVVRVKRRDTYMDALESASVEGDIKPFARFLVEEMQE 106          
BLAST of mRNA_M-pyrifera_M_contig108561.1803.1 vs. uniprot
Match: A0A1G0H6H9_9GAMM (Fido domain-containing protein n=1 Tax=Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_38_11 TaxID=1798278 RepID=A0A1G0H6H9_9GAMM)

HSP 1 Score: 114 bits (284), Expect = 6.700e-28
Identity = 51/74 (68.92%), Postives = 62/74 (83.78%), Query Frame = 1
Query:    1 RAALGHYLFVFIHPYMDGNGRLARFILNTMLASGGYPWTIVRVDNRSQYIDSLETTHLGDGIEKFCQFIVKEMQ 222
            RA LGHY+FVFIHPYMDGNGR+ARFILNTMLASGGYPW+IV+V  R++YI++LE  H    I+ F  FI++EMQ
Sbjct:  432 RAILGHYIFVFIHPYMDGNGRIARFILNTMLASGGYPWSIVQVKRRNEYINALEAVHTTSDIKPFVCFIIEEMQ 505          
BLAST of mRNA_M-pyrifera_M_contig108561.1803.1 vs. uniprot
Match: A0A1X0XPC3_9DELT (Fido domain-containing protein n=2 Tax=Geothermobacter hydrogeniphilus TaxID=1969733 RepID=A0A1X0XPC3_9DELT)

HSP 1 Score: 111 bits (278), Expect = 4.370e-27
Identity = 48/75 (64.00%), Postives = 62/75 (82.67%), Query Frame = 1
Query:    1 RAALGHYLFVFIHPYMDGNGRLARFILNTMLASGGYPWTIVRVDNRSQYIDSLETTHLGDGIEKFCQFIVKEMQE 225
            RA LGH+LFVF+HPYMDGNGRL RF++NTMLASGGYPWT++R+ +R++Y+DSLE       I +F +FIV+EM E
Sbjct:  430 RAVLGHFLFVFVHPYMDGNGRLGRFLMNTMLASGGYPWTVIRMTSRTRYMDSLEEASAKGNILEFTRFIVREMSE 504          
BLAST of mRNA_M-pyrifera_M_contig108561.1803.1 vs. uniprot
Match: A0A521XWT2_9GAMM (Fic family protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A521XWT2_9GAMM)

HSP 1 Score: 106 bits (265), Expect = 2.660e-26
Identity = 47/73 (64.38%), Postives = 55/73 (75.34%), Query Frame = 1
Query:    4 AALGHYLFVFIHPYMDGNGRLARFILNTMLASGGYPWTIVRVDNRSQYIDSLETTHLGDGIEKFCQFIVKEMQ 222
            A LGHY FV+IHPYMDGNGRL RF++N  LASGGYPWT+VRVDNR++YI  LE TH    +  F  FI  EM+
Sbjct:  220 AVLGHYFFVYIHPYMDGNGRLGRFLMNAFLASGGYPWTVVRVDNRNKYISILENTHTRFDMTDFADFIKDEME 292          
BLAST of mRNA_M-pyrifera_M_contig108561.1803.1 vs. uniprot
Match: K2CZ90_9BACT (Fido domain-containing protein (Fragment) n=1 Tax=uncultured bacterium TaxID=77133 RepID=K2CZ90_9BACT)

HSP 1 Score: 105 bits (262), Expect = 9.290e-26
Identity = 46/74 (62.16%), Postives = 56/74 (75.68%), Query Frame = 1
Query:    1 RAALGHYLFVFIHPYMDGNGRLARFILNTMLASGGYPWTIVRVDNRSQYIDSLETTHLGDGIEKFCQFIVKEMQ 222
            RA LGH+LFVFIHPY DGNGRL RF++N MLASGGYPWT+ RV  R  Y+D+LE   +G  I  F +FI +EM+
Sbjct:  231 RAVLGHHLFVFIHPYFDGNGRLGRFLMNAMLASGGYPWTVTRVKRRDAYMDALERASVGGDITPFTRFIAEEME 304          
BLAST of mRNA_M-pyrifera_M_contig108561.1803.1 vs. uniprot
Match: UPI001890F4BB (Fic family protein n=1 Tax=Candidatus Neptunochlamydia vexilliferae TaxID=1651774 RepID=UPI001890F4BB)

HSP 1 Score: 107 bits (268), Expect = 1.120e-25
Identity = 46/78 (58.97%), Postives = 56/78 (71.79%), Query Frame = 1
Query:    1 RAALGHYLFVFIHPYMDGNGRLARFILNTMLASGGYPWTIVRVDNRSQYIDSLETTHLGDGIEKFCQFIVKEMQENSS 234
            RA LGHY+FV+IHPYMDGNGR+ RF++N M  SGGYPWTI+ V NR  Y+D+LE       IE F  FI +EM+E  S
Sbjct:  430 RAVLGHYIFVYIHPYMDGNGRIGRFLMNVMFVSGGYPWTIIEVKNRKAYLDALEIAGTDQNIEPFAAFIAQEMREQQS 507          
BLAST of mRNA_M-pyrifera_M_contig108561.1803.1 vs. uniprot
Match: UPI001E4E5B0A (Fic family protein n=1 Tax=Myroides sp. M-43 TaxID=2893756 RepID=UPI001E4E5B0A)

HSP 1 Score: 99.8 bits (247), Expect = 1.750e-25
Identity = 42/76 (55.26%), Postives = 60/76 (78.95%), Query Frame = 1
Query:    1 RAALGHYLFVFIHPYMDGNGRLARFILNTMLASGGYPWTIVRVDNRSQYIDSLETTHLGDGIEKFCQFIVKEMQEN 228
            RA LGH++FV+IHPYMDGNGR+ARF++N MLASGG+PWTI+ ++ R  Y+ +LE+  +G  IE F  F+ K ++E+
Sbjct:   28 RAVLGHFIFVYIHPYMDGNGRMARFLMNLMLASGGFPWTIIPLEERDAYMAALESASVGGNIEPFTIFLSKLVRES 103          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108561.1803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
X0YCD3_9ZZZZ8.080e-3373.97Fido domain-containing protein (Fragment) n=1 Tax=... [more]
A0A2E3MG77_9GAMM1.400e-3278.08Cell filamentation protein Fic n=1 Tax=Legionellal... [more]
A0A1G0GR73_9GAMM1.770e-2868.92Fido domain-containing protein n=1 Tax=Gammaproteo... [more]
A0A3D3HUQ1_9BACT4.020e-2862.67Fido domain-containing protein (Fragment) n=1 Tax=... [more]
A0A1G0H6H9_9GAMM6.700e-2868.92Fido domain-containing protein n=1 Tax=Gammaproteo... [more]
A0A1X0XPC3_9DELT4.370e-2764.00Fido domain-containing protein n=2 Tax=Geothermoba... [more]
A0A521XWT2_9GAMM2.660e-2664.38Fic family protein n=1 Tax=Gammaproteobacteria bac... [more]
K2CZ90_9BACT9.290e-2662.16Fido domain-containing protein (Fragment) n=1 Tax=... [more]
UPI001890F4BB1.120e-2558.97Fic family protein n=1 Tax=Candidatus Neptunochlam... [more]
UPI001E4E5B0A1.750e-2555.26Fic family protein n=1 Tax=Myroides sp. M-43 TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108561contigM-pyrifera_M_contig108561:365..601 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score102.1
Seed ortholog evalue1.3e-19
Seed eggNOG ortholog1121918.ARWE01000001_gene3252
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PFAM filamentation induced by cAMP protein Fic
EggNOG OGs1MX0V@1224,2WJBD@28221,42NRY@68525,COG3177@1,COG3177@2
COG Functional cat.S
Best tax levelDeltaproteobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size237
Cds size237
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815595.5154314-CDS-M-pyrifera_M_contig108561:364..6011622815595.5154314-CDS-M-pyrifera_M_contig108561:364..601Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108561 365..601 -
1692277479.6200643-CDS-M-pyrifera_M_contig108561:364..6011692277479.6200643-CDS-M-pyrifera_M_contig108561:364..601Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108561 365..601 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108561.1803.1prot_M-pyrifera_M_contig108561.1803.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108561 365..601 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108561.1803.1

>prot_M-pyrifera_M_contig108561.1803.1 ID=prot_M-pyrifera_M_contig108561.1803.1|Name=mRNA_M-pyrifera_M_contig108561.1803.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=79bp
RAALGHYLFVFIHPYMDGNGRLARFILNTMLASGGYPWTIVRVDNRSQYI
DSLETTHLGDGIEKFCQFIVKEMQENSS*
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mRNA from alignment at M-pyrifera_M_contig108561:365..601-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108561.1803.1 ID=mRNA_M-pyrifera_M_contig108561.1803.1|Name=mRNA_M-pyrifera_M_contig108561.1803.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=237bp|location=Sequence derived from alignment at M-pyrifera_M_contig108561:365..601- (Macrocystis pyrifera P11B4 male)
CGTGCTGCACTTGGTCATTATCTATTTGTGTTTATTCATCCATATATGGA TGGTAATGGACGATTGGCTCGCTTTATTCTAAATACGATGCTTGCATCAG GTGGATATCCTTGGACAATTGTTCGCGTTGATAACCGCAGCCAATACATC GACAGTCTGGAAACTACTCACTTAGGAGATGGAATTGAAAAATTTTGCCA GTTCATCGTGAAGGAAATGCAGGAAAATTCATCTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108561:365..601-

>mRNA_M-pyrifera_M_contig108561.1803.1 ID=mRNA_M-pyrifera_M_contig108561.1803.1|Name=mRNA_M-pyrifera_M_contig108561.1803.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig108561:365..601- (Macrocystis pyrifera P11B4 male)
CGTGCTGCACTTGGTCATTATCTATTTGTGTTTATTCATCCATATATGGA
TGGTAATGGACGATTGGCTCGCTTTATTCTAAATACGATGCTTGCATCAG
GTGGATATCCTTGGACAATTGTTCGCGTTGATAACCGCAGCCAATACATC
GACAGTCTGGAAACTACTCACTTAGGAGATGGAATTGAAAAATTTTGCCA
GTTCATCGTGAAGGAAATGCAGGAAAATTCATCTTGACGTGCTGCACTTG
GTCATTATCTATTTGTGTTTATTCATCCATATATGGATGGTAATGGACGA
TTGGCTCGCTTTATTCTAAATACGATGCTTGCATCAGGTGGATATCCTTG
GACAATTGTTCGCGTTGATAACCGCAGCCAATACATCGACAGTCTGGAAA
CTACTCACTTAGGAGATGGAATTGAAAAATTTTGCCAGTTCATCGTGAAG
GAAATGCAGGAAAATTCATCTTGA
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