mRNA_M-pyrifera_M_contig108481.1798.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108481.1798.1
Unique NamemRNA_M-pyrifera_M_contig108481.1798.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig108481.1798.1 vs. uniprot
Match: A0A3D5DDD8_9GAMM (MATE family efflux transporter (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DDD8_9GAMM)

HSP 1 Score: 152 bits (385), Expect = 2.510e-45
Identity = 73/109 (66.97%), Postives = 87/109 (79.82%), Query Frame = 1 
Query:    4 SAVFTIILATFIARLYTPDPDVVALSSSLLVIAAVLQIGDGTQVTAGGALRGLKDTRIPFLINAIVYWGIGFSVAYYCGVHLGYGAPGVWFGLCCCLWVAAVVLSLRFH 330
            SA  T+   T IARLY+ D  VVAL++SLL+IAA++Q+GDG QVTA GALRGLKDTRIP  INA VYW +GFS+AY  GVH  YGAPGVW GLCCCLWVA ++L++RF 
Sbjct:   36 SAACTVAFGTDIARLYSTDDAVVALAASLLMIAALMQLGDGMQVTAAGALRGLKDTRIPLGINAFVYWCVGFSIAYTLGVHFDYGAPGVWVGLCCCLWVAGILLTMRFR 144
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BLAST of mRNA_M-pyrifera_M_contig108481.1798.1 vs. uniprot
Match: A0A523NTX9_9PROT (MATE family efflux transporter n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523NTX9_9PROT)

HSP 1 Score: 146 bits (369), Expect = 8.660e-40
Identity = 71/109 (65.14%), Postives = 86/109 (78.90%), Query Frame = 1 
Query:    4 SAVFTIILATFIARLYTPDPDVVALSSSLLVIAAVLQIGDGTQVTAGGALRGLKDTRIPFLINAIVYWGIGFSVAYYCGVHLGYGAPGVWFGLCCCLWVAAVVLSLRFH 330
            SAV T++ A  IARLY+ D  V+ L +SLL IAA++Q+GDG+QVTA GALRGLKDTRIP LINA VYW +GFS+AY  GV   YGA GVW GL  CLWVAA++L+LRF+
Sbjct:  334 SAVLTVVYAAAIARLYSQDEAVITLVTSLLFIAAIMQLGDGSQVTAAGALRGLKDTRIPLLINAFVYWIVGFSIAYVLGVRFDYGAHGVWIGLASCLWVAAILLTLRFY 442
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BLAST of mRNA_M-pyrifera_M_contig108481.1798.1 vs. uniprot
Match: A0A521FIS0_9BACT (Multidrug resistance protein, MATE family n=2 Tax=Gracilimonas mengyeensis TaxID=1302730 RepID=A0A521FIS0_9BACT)

HSP 1 Score: 120 bits (302), Expect = 3.980e-30
Identity = 57/110 (51.82%), Postives = 77/110 (70.00%), Query Frame = 1 
Query:    1 LSAVFTIILATFIARLYTPDPDVVALSSSLLVIAAVLQIGDGTQVTAGGALRGLKDTRIPFLINAIVYWGIGFSVAYYCGVHLGYGAPGVWFGLCCCLWVAAVVLSLRFH 330
            L+A+   ++  FI  +YT DP+V   + SL+ +AA+ QI DG QV A GALRGLKDTR+P ++N I YW +GF+  Y  G+HLGYG  G+W GL C L VAAV+ ++RFH
Sbjct:  337 LTAILLFLVPDFIISIYTDDPEVATTAVSLIFMAAIFQISDGLQVGAFGALRGLKDTRLPMIVNFISYWLVGFTTGYGLGIHLGYGPEGLWIGLICGLTVAAVLHNIRFH 446
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BLAST of mRNA_M-pyrifera_M_contig108481.1798.1 vs. uniprot
Match: A0A2D9FV97_9BACT (MATE family efflux transporter n=2 Tax=Balneolaceae TaxID=1813606 RepID=A0A2D9FV97_9BACT)

HSP 1 Score: 114 bits (284), Expect = 1.500e-27
Identity = 57/109 (52.29%), Postives = 74/109 (67.89%), Query Frame = 1 
Query:    4 SAVFTIILATFIARLYTPDPDVVALSSSLLVIAAVLQIGDGTQVTAGGALRGLKDTRIPFLINAIVYWGIGFSVAYYCGVHLGYGAPGVWFGLCCCLWVAAVVLSLRFH 330
            +A+   +   FI  +YT DP+V  ++  LL +AAV QI DG QV A GALRGLKDTR+P ++N I YW IGF V Y  G++LGYG  G+W GL C L VAAV+ + RF+
Sbjct:  332 TALLLFLFPEFIISIYTDDPEVTGMAVLLLFMAAVFQISDGLQVGAFGALRGLKDTRVPMVVNFISYWIIGFPVGYVLGINLGYGPEGLWIGLICGLTVAAVLHNYRFN 440
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BLAST of mRNA_M-pyrifera_M_contig108481.1798.1 vs. uniprot
Match: A0A558DFP2_9GAMM (MATE family efflux transporter n=1 Tax=Sedimenticola thiotaurini TaxID=1543721 RepID=A0A558DFP2_9GAMM)

HSP 1 Score: 110 bits (276), Expect = 2.040e-26
Identity = 57/111 (51.35%), Postives = 74/111 (66.67%), Query Frame = 1 
Query:    1 LSAVFTIILATFIARLYTPDPDVVALSSSLLVIAAVLQIGDGTQVTAGGALRGLKDTRIPFLINAIVYWGIGFSVAYYCGVHLGYGAPGVWFGLCCCLWVAAVVLSLRFHI 333
            LSA F ++  + I  LYT D DV A++ SLL  AA+ Q  DG QV+A GALRGLKDT +P LI  +VYW +GF VA+  G+  G G  G+W GL   L  AA++L+LRF+I
Sbjct:  331 LSATFLLVFPSQIVALYTQDADVTAMAISLLFAAALFQFSDGLQVSASGALRGLKDTAMPMLITVVVYWAVGFPVAWLVGIEWGVGPQGLWGGLVVGLTGAAILLNLRFYI 441
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BLAST of mRNA_M-pyrifera_M_contig108481.1798.1 vs. uniprot
Match: A0A4V3DLD5_9GAMM (MATE family multidrug resistance protein n=1 Tax=Tahibacter aquaticus TaxID=520092 RepID=A0A4V3DLD5_9GAMM)

HSP 1 Score: 110 bits (275), Expect = 3.320e-26
Identity = 54/98 (55.10%), Postives = 66/98 (67.35%), Query Frame = 1 
Query:   37 IARLYTPDPDVVALSSSLLVIAAVLQIGDGTQVTAGGALRGLKDTRIPFLINAIVYWGIGFSVAYYCGVHLGYGAPGVWFGLCCCLWVAAVVLSLRFH 330
            IA LYT D  V+AL++ LL++A + Q  DG QV + GALRGLKDTR+P LI    YWGIG  V +Y     G+GA G+W GL   L VAAV+L LRFH
Sbjct:  345 IAALYTSDAAVIALAAQLLILAGLFQFSDGIQVASNGALRGLKDTRLPMLITVFAYWGIGMPVGWYLAFRQGFGARGMWMGLIAGLSVAAVLLFLRFH 442
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BLAST of mRNA_M-pyrifera_M_contig108481.1798.1 vs. uniprot
Match: A0A6A8Q761_9BACT (MATE family efflux transporter n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A6A8Q761_9BACT)

HSP 1 Score: 109 bits (273), Expect = 5.210e-26
Identity = 55/98 (56.12%), Postives = 68/98 (69.39%), Query Frame = 1 
Query:   37 IARLYTPDPDVVALSSSLLVIAAVLQIGDGTQVTAGGALRGLKDTRIPFLINAIVYWGIGFSVAYYCGVHLGYGAPGVWFGLCCCLWVAAVVLSLRFH 330
            I  +YT + +V AL+ SLL +AA+ QI DG QV   GALRGLKDTRIP ++N I YW IGF V Y  G+ LG+G  G+W GL C L VAA + +LRFH
Sbjct:  343 IVSIYTDNAEVSALAVSLLFMAAIFQISDGLQVGGFGALRGLKDTRIPMVVNFIAYWVIGFPVGYLLGLKLGFGPKGLWIGLICGLTVAAFLHNLRFH 440
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BLAST of mRNA_M-pyrifera_M_contig108481.1798.1 vs. uniprot
Match: UPI001EDA28FF (MATE family efflux transporter n=1 Tax=Rhodohalobacter sp. WB101 TaxID=2911366 RepID=UPI001EDA28FF)

HSP 1 Score: 109 bits (273), Expect = 5.450e-26
Identity = 54/109 (49.54%), Postives = 71/109 (65.14%), Query Frame = 1 
Query:    4 SAVFTIILATFIARLYTPDPDVVALSSSLLVIAAVLQIGDGTQVTAGGALRGLKDTRIPFLINAIVYWGIGFSVAYYCGVHLGYGAPGVWFGLCCCLWVAAVVLSLRFH 330
            +A+F  +    IA +YT +P V +++  LL  AAV Q+ DG QV   GALRGLKDT++P  +N   YW IG SVAYY G   GYGAPG+W GL   L VA ++ +LRF+
Sbjct:  334 TAIFIFLFPNTIASIYTNEPAVKSVAVELLFFAAVFQLSDGLQVAGFGALRGLKDTKVPMFVNLFAYWVIGISVAYYLGFVSGYGAPGLWIGLITGLTVAGILHNLRFY 442
[Close]
BLAST of mRNA_M-pyrifera_M_contig108481.1798.1 vs. uniprot
Match: A0A3M2JBV0_9BACT (MATE family efflux transporter (Fragment) n=1 Tax=Calditrichaeota bacterium TaxID=2212469 RepID=A0A3M2JBV0_9BACT)

HSP 1 Score: 108 bits (271), Expect = 8.300e-26
Identity = 54/99 (54.55%), Postives = 70/99 (70.71%), Query Frame = 1 
Query:   37 IARLYTPDPDVVALSSSLLVIAAVLQIGDGTQVTAGGALRGLKDTRIPFLINAIVYWGIGFSVAYYCGVHLGYGAPGVWFGLCCCLWVAAVVLSLRFHI 333
            IAR+YT D  V+ +++ LLV+AA+ Q+ DG QV+A GALRGLKDTR+P L+NA+ YW +G  V YY G+  G GA G+W GL   L VAAV  + RF I
Sbjct:  302 IARIYTSDSAVIRVAAPLLVMAALFQLSDGLQVSAAGALRGLKDTRVPMLVNAVAYWIVGLPVGYYLGIVQGQGARGLWIGLIAGLSVAAVSHTWRFKI 400
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BLAST of mRNA_M-pyrifera_M_contig108481.1798.1 vs. uniprot
Match: A0A5Q4F5B7_9BACT (MATE family efflux transporter n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A5Q4F5B7_9BACT)

HSP 1 Score: 108 bits (271), Expect = 1.030e-25
Identity = 53/98 (54.08%), Postives = 68/98 (69.39%), Query Frame = 1 
Query:   37 IARLYTPDPDVVALSSSLLVIAAVLQIGDGTQVTAGGALRGLKDTRIPFLINAIVYWGIGFSVAYYCGVHLGYGAPGVWFGLCCCLWVAAVVLSLRFH 330
            I  +YT D DV A++  LL +AAV Q+ DG QV+  GALRGLKDT +P ++N I YW IG  VAYY G  LG+GAPG+W GL   L VA ++ +LRF+
Sbjct:  347 IVSIYTSDSDVTAVAVQLLFMAAVFQLSDGLQVSGFGALRGLKDTTVPMIVNLIAYWLIGIPVAYYLGFGLGFGAPGLWGGLIAGLTVAGILHNLRFY 444
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108481.1798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D5DDD8_9GAMM2.510e-4566.97MATE family efflux transporter (Fragment) n=1 Tax=... [more]
A0A523NTX9_9PROT8.660e-4065.14MATE family efflux transporter n=1 Tax=Proteobacte... [more]
A0A521FIS0_9BACT3.980e-3051.82Multidrug resistance protein, MATE family n=2 Tax=... [more]
A0A2D9FV97_9BACT1.500e-2752.29MATE family efflux transporter n=2 Tax=Balneolacea... [more]
A0A558DFP2_9GAMM2.040e-2651.35MATE family efflux transporter n=1 Tax=Sedimentico... [more]
A0A4V3DLD5_9GAMM3.320e-2655.10MATE family multidrug resistance protein n=1 Tax=T... [more]
A0A6A8Q761_9BACT5.210e-2656.12MATE family efflux transporter n=1 Tax=Balneolacea... [more]
UPI001EDA28FF5.450e-2649.54MATE family efflux transporter n=1 Tax=Rhodohaloba... [more]
A0A3M2JBV0_9BACT8.300e-2654.55MATE family efflux transporter (Fragment) n=1 Tax=... [more]
A0A5Q4F5B7_9BACT1.030e-2554.08MATE family efflux transporter n=1 Tax=Balneolacea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108481contigM-pyrifera_M_contig108481:277..612 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score112.8
Seed ortholog evalue1e-22
Seed eggNOG ortholog1121930.AQXG01000015_gene1870
Preferred namemdtK
KEGG koko:K03327
KEGG TC2.A.66.1
Hectar predicted targeting categorysignal peptide
GOsGO:0000302,GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006855,GO:0006857,GO:0006950,GO:0006979,GO:0008150,GO:0009987,GO:0015238,GO:0015833,GO:0015893,GO:0016020,GO:0022857,GO:0033554,GO:0034599,GO:0034614,GO:0035442,GO:0035672,GO:0035673,GO:0042221,GO:0042493,GO:0042886,GO:0042887,GO:0042891,GO:0042895,GO:0042938,GO:0044464,GO:0046677,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055085,GO:0070887,GO:0071702,GO:0071705,GO:0071916,GO:0071944,GO:1901700,GO:1901701,GO:1904680
EggNOG free text desc.efflux protein, MATE family
EggNOG OGs1IPQM@117747,4NEBB@976,COG0534@1,COG0534@2
COG Functional cat.V
Best tax levelSphingobacteriia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size336
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815595.2537313-CDS-M-pyrifera_M_contig108481:276..6121622815595.2537313-CDS-M-pyrifera_M_contig108481:276..612Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108481 277..612 -
1692277479.5077484-CDS-M-pyrifera_M_contig108481:276..6121692277479.5077484-CDS-M-pyrifera_M_contig108481:276..612Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108481 277..612 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108481.1798.1prot_M-pyrifera_M_contig108481.1798.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108481 277..612 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108481.1798.1

>prot_M-pyrifera_M_contig108481.1798.1 ID=prot_M-pyrifera_M_contig108481.1798.1|Name=mRNA_M-pyrifera_M_contig108481.1798.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
LSAVFTIILATFIARLYTPDPDVVALSSSLLVIAAVLQIGDGTQVTAGGA
LRGLKDTRIPFLINAIVYWGIGFSVAYYCGVHLGYGAPGVWFGLCCCLWV
AAVVLSLRFHIV
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mRNA from alignment at M-pyrifera_M_contig108481:277..612-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108481.1798.1 ID=mRNA_M-pyrifera_M_contig108481.1798.1|Name=mRNA_M-pyrifera_M_contig108481.1798.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig108481:277..612- (Macrocystis pyrifera P11B4 male)
CTGAGCGCGGTGTTCACGATCATTCTCGCAACATTTATCGCCCGGCTGTA
CACGCCCGACCCCGATGTCGTGGCCTTGTCCTCATCGCTGCTGGTGATCG
CCGCGGTACTGCAGATCGGCGACGGTACGCAGGTCACCGCGGGCGGGGCG
TTGCGCGGGCTCAAGGACACGCGGATCCCGTTCCTGATCAACGCCATCGT
CTACTGGGGCATCGGTTTCAGTGTGGCGTATTATTGCGGCGTACATCTCG
GCTATGGCGCGCCCGGGGTGTGGTTCGGGCTGTGCTGTTGTTTGTGGGTT
GCCGCGGTTGTATTGAGCCTGCGCTTTCATATCGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108481:277..612-

>mRNA_M-pyrifera_M_contig108481.1798.1 ID=mRNA_M-pyrifera_M_contig108481.1798.1|Name=mRNA_M-pyrifera_M_contig108481.1798.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig108481:277..612- (Macrocystis pyrifera P11B4 male)
CTGAGCGCGGTGTTCACGATCATTCTCGCAACATTTATCGCCCGGCTGTA
CACGCCCGACCCCGATGTCGTGGCCTTGTCCTCATCGCTGCTGGTGATCG
CCGCGGTACTGCAGATCGGCGACGGTACGCAGGTCACCGCGGGCGGGGCG
TTGCGCGGGCTCAAGGACACGCGGATCCCGTTCCTGATCAACGCCATCGT
CTACTGGGGCATCGGTTTCAGTGTGGCGTATTATTGCGGCGTACATCTCG
GCTATGGCGCGCCCGGGGTGTGGTTCGGGCTGTGCTGTTGTTTGTGGGTT
GCCGCGGTTGTATTGAGCCTGCGCTTTCATATCGTCCTGAGCGCGGTGTT
CACGATCATTCTCGCAACATTTATCGCCCGGCTGTACACGCCCGACCCCG
ATGTCGTGGCCTTGTCCTCATCGCTGCTGGTGATCGCCGCGGTACTGCAG
ATCGGCGACGGTACGCAGGTCACCGCGGGCGGGGCGTTGCGCGGGCTCAA
GGACACGCGGATCCCGTTCCTGATCAACGCCATCGTCTACTGGGGCATCG
GTTTCAGTGTGGCGTATTATTGCGGCGTACATCTCGGCTATGGCGCGCCC
GGGGTGTGGTTCGGGCTGTGCTGTTGTTTGTGGGTTGCCGCGGTTGTATT
GAGCCTGCGCTTTCATATCGTC
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