mRNA_M-pyrifera_M_contig10848.1797.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10848.1797.1
Unique NamemRNA_M-pyrifera_M_contig10848.1797.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig10848.1797.1 vs. uniprot
Match: A0A6H5KHJ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHJ1_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 6.370e-59
Identity = 109/169 (64.50%), Postives = 135/169 (79.88%), Query Frame = 1 
Query:   13 LNLSDEQQRAFMLKASMKKLSSATTLPSRKRKTPVEEAVDERVFASEMGFLKNSKEFKNRMKVGSGVRFDAQGFPMRGAGDPMIASARKPKVTSCFPSAESVVEGVSFPSLPDCPRCSAPTMEDELSQFGMCSQCKADEISAVAYSGPAVASKYTYDNGDAPFSSSWTT 519
            LN+SDEQQRAFML+ASMKKLS+A+ LP R     V+E ++ERVFASE GFL+NS +FKN+MKVGS V FD+ G P+    DP+I +AR+    +   + +S VEG++FPSLPDCPRCS PT EDELS+F MCSQCKA +IS+ AY+GP +ASKYTYDNGDAPFSSSWT+
Sbjct:  178 LNMSDEQQRAFMLQASMKKLSAASRLPKRPPPDRVKEVLNERVFASEKGFLQNSADFKNKMKVGSRVNFDSYGLPVADERDPVIQAARETTKANQRAAEKSGVEGITFPSLPDCPRCSMPTTEDELSRFDMCSQCKAQDISSKAYAGPQMASKYTYDNGDAPFSSSWTS 346
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BLAST of mRNA_M-pyrifera_M_contig10848.1797.1 vs. uniprot
Match: D7FVK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVK9_ECTSI)

HSP 1 Score: 207 bits (528), Expect = 1.940e-58
Identity = 178/522 (34.10%), Postives = 226/522 (43.30%), Query Frame = 1 
Query:   19 LSDEQQRAFMLKASMKKLSSATTLPSRKRKTPVEEAVDERVFASEMGFLKNSKEFKNRMKVGSGVRFDAQGFPMRGAGDPMIASARKPKVTSCFPSAESVVEGVSFPSLPDCPRCSAPTMEDELSQFGMCSQCKADEISAVAYSGPAVASKYTYDNGDAPFSSSWTT---------------------------------------------------------STXXXXXXXXPDKXXXXXXXXXRIRNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGD-------------------------------------------------------ISGDRVSGG-----------EGSE----AVQKLSLEVAELRSLVGATRAALGKRGTEHPGVVG----TTAAAAAASAKDGQRDAAVRKLARDVAELRADXXXXXXXXXXXXXXX-----GGTEAVXXXXXXXXXXRSQLEQSRKEHAMTRTTLRRLKDGVDGLVERDAQR 1176
            +SDEQQRAFML+ASMKKLS+A+ LP R     V+E ++ERVFASE GFL+NS +FKN+MKVGS V FD+ G P+    DP+I +AR+    +   + +S VE ++FPSLPDCPRCS PT EDELS+F MCSQCKA EI++ AY+GP +ASKYTYDNGDAPFSSSWT+                                                         ST                     +R G                                           RGD                                                       +S DR  GG           +G++    AV+KLSLEVAELR+L+G  R+AL +  T           T    AA++ +D +RD AVRKLARDVAELRA                     G +E V          RSQL+ +RKE  +TR+ LRRL+  VD L ++ A R
Sbjct:    1 MSDEQQRAFMLQASMKKLSAASRLPKRPPPDRVKEVLNERVFASEKGFLQNSADFKNKMKVGSRVNFDSHGLPVADERDPIIQAARETTKANQRAAEKSGVEAITFPSLPDCPRCSMPTTEDELSRFEMCSQCKAQEITSKAYAGPQMASKYTYDNGDAPFSSSWTSPVPPKTNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPIDTRRAGAPSTWSYGDNDNDRGESPTGASAGPLRKGNGNLRSTTGSGSHRNLGNSAPDTVSPPSATATGSTVAAASF--RGDGVPGAFPRAAATAAAPADNTVVDTKRSSNAKVGGGSDNFSRAPGPFAARASKGGAVSRDRPRGGGSDGGVSSGETKGNDRAEVAVRKLSLEVAELRTLLGINRSALARVETMSKSAKAPQPTTEGRGAASNNEDQRRDTAVRKLARDVAELRAQLSTVVDKVSDSAVTPPSGRGGDSEVVQTMKREMAELRSQLDNARKETTLTRSALRRLQGEVDVLQKKFAGR 520
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10848.1797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KHJ1_9PHAE6.370e-5964.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVK9_ECTSI1.940e-5834.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10848contigM-pyrifera_M_contig10848:5108..8525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_003680.1
Exons4
Model size1179
Cds size1179
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10848.1797.1prot_M-pyrifera_M_contig10848.1797.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10848 5108..8525 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815595.1522515-CDS-M-pyrifera_M_contig10848:5107..52841622815595.1522515-CDS-M-pyrifera_M_contig10848:5107..5284Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10848 5108..5284 +
1692277479.4663265-CDS-M-pyrifera_M_contig10848:5107..52841692277479.4663265-CDS-M-pyrifera_M_contig10848:5107..5284Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10848 5108..5284 +
1622815595.1628406-CDS-M-pyrifera_M_contig10848:6429..65521622815595.1628406-CDS-M-pyrifera_M_contig10848:6429..6552Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10848 6430..6552 +
1692277479.4761362-CDS-M-pyrifera_M_contig10848:6429..65521692277479.4761362-CDS-M-pyrifera_M_contig10848:6429..6552Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10848 6430..6552 +
1622815595.178358-CDS-M-pyrifera_M_contig10848:6734..68541622815595.178358-CDS-M-pyrifera_M_contig10848:6734..6854Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10848 6735..6854 +
1692277479.4845834-CDS-M-pyrifera_M_contig10848:6734..68541692277479.4845834-CDS-M-pyrifera_M_contig10848:6734..6854Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10848 6735..6854 +
1622815595.1910532-CDS-M-pyrifera_M_contig10848:7766..85251622815595.1910532-CDS-M-pyrifera_M_contig10848:7766..8525Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10848 7767..8525 +
1692277479.4935625-CDS-M-pyrifera_M_contig10848:7766..85251692277479.4935625-CDS-M-pyrifera_M_contig10848:7766..8525Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10848 7767..8525 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10848.1797.1

>prot_M-pyrifera_M_contig10848.1797.1 ID=prot_M-pyrifera_M_contig10848.1797.1|Name=mRNA_M-pyrifera_M_contig10848.1797.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=393bp
MARGLNLSDEQQRAFMLKASMKKLSSATTLPSRKRKTPVEEAVDERVFAS
EMGFLKNSKEFKNRMKVGSGVRFDAQGFPMRGAGDPMIASARKPKVTSCF
PSAESVVEGVSFPSLPDCPRCSAPTMEDELSQFGMCSQCKADEISAVAYS
GPAVASKYTYDNGDAPFSSSWTTSTSTKGRGTPPDKPDPEISTATRIRNG
ARAAAAAAAAAAASNGGGSAAANRDGTPFATAAATGSGGGGGGRGDISGD
RVSGGEGSEAVQKLSLEVAELRSLVGATRAALGKRGTEHPGVVGTTAAAA
AASAKDGQRDAAVRKLARDVAELRADLASVAARDGAVGAREGGTEAVQRL
SREVTELRSQLEQSRKEHAMTRTTLRRLKDGVDGLVERDAQR*
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mRNA from alignment at M-pyrifera_M_contig10848:5108..8525+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10848.1797.1 ID=mRNA_M-pyrifera_M_contig10848.1797.1|Name=mRNA_M-pyrifera_M_contig10848.1797.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3418bp|location=Sequence derived from alignment at M-pyrifera_M_contig10848:5108..8525+ (Macrocystis pyrifera P11B4 male)
ATGGCTCGAGGGCTCAACTTGTCCGACGAGCAGCAGCGAGCGTTCATGCT
CAAGGCCAGCATGAAGAAACTGTCCTCCGCGACAACTCTCCCCAGTCGAA
AGCGGAAAACCCCAGTGGAAGAAGCGGTGGACGAGCGAGTGTTTGCCTCG
GAAATGGGTTTTCTAAAGAACAGCAAGGTGACTTTGACGGGGAGGGGGTT
CAAGCGCTGATGACAACGGAAGCATGTGCCCGAGATGTTGCCCTACGCAC
CTGGAAGATGTTGGCCGCACGGAGATAACGAGACGCTACATTTTTTTTCG
GTTGCGCGTGGTATTAAATATTCCAAGACATTTAGCAGTGTGTGCGCTTT
TTATCGATGGAGAGGGAGGTACGGAGGGCGGCCGTTGTGTCTGTTTTGGT
GTTGCGTGCTGAGGCGGACGGCGATTACAAGCTGGGGCTGGTAGCGGGAT
ATGTATACACCTGGTATATATATTATGTTGGGGTGGCAACGTCAACGTGG
CGCCGAGCGCCGCGATGAGTACTGTGCACGGCTGTCCCGGTTCCAACTTT
TTTCTTGACACCATCTCATGGCATTCGGTTTTTTAAAAAATGCCTATGTG
TAATAGAACACCCGGGCGAGAGAATGTAACCTGTCTCGTAGAGTGCTTCT
ACGTATACTCATACATGACGAAAGATGGCGGGACCCATCCGAACGGAGAT
CGCGACACACCTTTCATATGGTGCTCTTTGAATGTGTACCCCTGTGTGCA
TGTGTGTGCGTGAATGAGTGCGTGAATGCGTGTGTGTGCTTGGAACCCTC
TCGGTTGCTGCTGCTCGGTACGGCACCCGTCCTGCTTCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTACAGCTGCTGCCACTACAGCGTTTAGTCCAAACA
TTTTCATGGAGCGAGAAGAGCCTTGATATTAATTTTATCTTTCGGTTTCC
GTCGCCGCCGATACTGCCCCCGGCGCCGCCGCCTTGCCGACACCTCGGCC
CCACCTTGAACAGTTTTACCACAGCTACCATCGACAAGAAGGGGAGAAAA
AAAACGTGATACAACGTACTTTTGACGGAGCCGAAACATTCCTCGACCGT
TTTTTATTACATTCGTGCGCGGCGGAAGACTCCCAGAAATGTATTCCCTC
AGATCTGCTCCGTCCCGTGTAGAATTACGGGGGTCTATGGTCTTACAACT
ACGGTCATGCGTGACATGTGTACCCCCCCCCGCTCTCCCCTCCTTCACCC
TCCCCTCGTCGTTGTCTCCCCCCCCCTCTGTGCTCGATTGTTGCTCCATT
GTGTCACCCACCACCGGAACAGGAATTCAAGAACAGGATGAAGGTGGGCT
CGGGGGTCCGCTTCGACGCTCAAGGCTTTCCGATGAGGGGTGCAGGGGAC
CCAATGATTGCAAGTGCCAGGAAGCCTAAGGTGACATCATGTTTTGTATT
GTTCCCCGCATTCGTACAGTGTATACGTTTGGAGGCGTGATCAAACCGGG
AACTTTTCGTGAAAAACCCCAGAAAATCGATTCAAAAGACTAAGGTAAGC
AGCAAATAAATACACCCCTGTCGCCCCCCCCCCCCCACGCACGCCACCCA
CGGTTTCCCATCGTTTTTGCGAGGTAGCCTTCAGCGGAGTCGGTGGTCGA
GGGCGTTTCTTTCCCGTCCCTGCCTGACTGTCCGCGCTGCTCCGCGCCGA
CGATGGAGGACGAGCTGTCTCAGTTCGGGATGTGCTCTCAGTGCAAGGTT
CGGCATGCGTATAGATAACCGTTTGCGGTCGCCAAGCTCCCTAGATTTAG
CCGTTGTGACCACCAAGCTTGCTAGATATATAGTCGCCGCGACCGCCAAG
ATTGCTATTAATAGATGTATAGTCACTGCGACCGCCAATATTGCTAGATA
TAGCCGTTGCGGCACCCGAGCTTGCTAGATTTAGCCAAAGCAGCACCCAA
TCTTGCTACCAGGGTAGATATTAGCCGTTGTCACCGCCAAGCTTGCTGGA
TACCTGGTATAGCCATTGCGGCGGCCGGGCTTACTGGAAGTATAGCCTTC
GTGGCGGCCAAACTTTAGTTTGAAGGCAACCGTTAGCTCTTGCGATTTTT
TTACGATTTGTCGCGATCCGAGTCGCGCAGTGATGATTCTGGCTCCGAAA
TCTCGAGATTGAGTGTTGCACAGAGGATGAAATTTACCCTGGTGTTGTTG
GTGTTGGTGTTGTGGTCATGTTACCTCATCGCCAACATGGTCCGCGTCCA
CGAGAAGGTGTCATTTCGCTTGGGCTGAAACGACTGAAGCACAACGCCTT
CAAGGTTACTTTTCTTACGCCCACCGCCCCCACCACTTTAACGCTAGATC
AGTGCTCGTCCTTGCTTGTCTCGGAAGGCGTTTGTGTTTTGCTGGTTCTT
CGCCGCAGTGGCTACGTTTTCCACCGAGCTGAAGACAGAGGCTTTTTCGC
ATTTTTTCGCGCGGCGAGCTGTTGCGAGATTTTCACAGGTCCAGCCAGCA
GCCGGAGACCCCTAACAAAAGCAAGCCGAATATTTTCAGCGGATCGTAGC
AACCGAAATTAAGTTCCTCGTACATTTTCCGTTGCTGCTTATCACTTGAG
CGCGTCATTTTTGCCTTTCTTTTACCGATCTGCTCAACAACAAAAAAATG
TATTTTCAGGCGGACGAAATTTCGGCCGTGGCTTACAGCGGGCCGGCGGT
GGCAAGCAAGTACACGTACGACAATGGCGACGCGCCCTTCAGCTCCTCGT
GGACAACGTCCACCTCTACGAAAGGCAGAGGGACTCCTCCCGATAAGCCA
GACCCTGAAATCTCAACGGCGACCCGCATACGTAACGGGGCCCGCGCTGC
TGCTGCTGCTGCAGCTGCGGCTGCTGCTTCTAATGGCGGTGGTAGTGCTG
CTGCTAACCGTGATGGTACTCCTTTTGCTACTGCTGCTGCTACTGGTAGT
GGTGGCGGCGGCGGTGGGAGGGGTGACATTTCTGGGGATAGGGTTAGCGG
CGGAGAGGGCAGCGAAGCGGTGCAGAAATTGTCGTTGGAGGTGGCTGAGC
TCCGCTCGCTAGTGGGAGCGACTCGTGCGGCGCTCGGGAAGAGGGGAACG
GAGCACCCAGGGGTGGTGGGGACAACGGCGGCGGCGGCGGCGGCCAGCGC
GAAAGACGGACAGCGGGATGCCGCCGTTAGAAAGCTGGCTCGAGATGTCG
CCGAGTTGCGCGCGGACCTCGCAAGCGTGGCGGCCAGGGATGGCGCGGTC
GGGGCTCGGGAAGGAGGCACGGAGGCGGTGCAGAGGCTGTCGAGGGAGGT
CACGGAGCTACGCTCGCAGCTGGAGCAATCGCGCAAGGAGCACGCCATGA
CACGAACGACTCTTCGGAGGCTGAAGGACGGGGTAGACGGCTTGGTCGAG
CGAGACGCGCAGCGGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10848:5108..8525+

>mRNA_M-pyrifera_M_contig10848.1797.1 ID=mRNA_M-pyrifera_M_contig10848.1797.1|Name=mRNA_M-pyrifera_M_contig10848.1797.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2358bp|location=Sequence derived from alignment at M-pyrifera_M_contig10848:5108..8525+ (Macrocystis pyrifera P11B4 male)
ATGGCTCGAGGGCTCAACTTGTCCGACGAGCAGCAGCGAGCGTTCATGCT
CAAGGCCAGCATGAAGAAACTGTCCTCCGCGACAACTCTCCCCAGTCGAA
AGCGGAAAACCCCAGTGGAAGAAGCGGTGGACGAGCGAGTGTTTGCCTCG
GAAATGGGTTTTCTAAAGAACAGCAAGATGGCTCGAGGGCTCAACTTGTC
CGACGAGCAGCAGCGAGCGTTCATGCTCAAGGCCAGCATGAAGAAACTGT
CCTCCGCGACAACTCTCCCCAGTCGAAAGCGGAAAACCCCAGTGGAAGAA
GCGGTGGACGAGCGAGTGTTTGCCTCGGAAATGGGTTTTCTAAAGAACAG
CAAGGAATTCAAGAACAGGATGAAGGTGGGCTCGGGGGTCCGCTTCGACG
CTCAAGGCTTTCCGATGAGGGGTGCAGGGGACCCAATGATTGCAAGTGCC
AGGAAGCCTAAGGTGACATCATGTTTTGAATTCAAGAACAGGATGAAGGT
GGGCTCGGGGGTCCGCTTCGACGCTCAAGGCTTTCCGATGAGGGGTGCAG
GGGACCCAATGATTGCAAGTGCCAGGAAGCCTAAGGTGACATCATGTTTT
CCTTCAGCGGAGTCGGTGGTCGAGGGCGTTTCTTTCCCGTCCCTGCCTGA
CTGTCCGCGCTGCTCCGCGCCGACGATGGAGGACGAGCTGTCTCAGTTCG
GGATGTGCTCTCAGTGCAAGCCTTCAGCGGAGTCGGTGGTCGAGGGCGTT
TCTTTCCCGTCCCTGCCTGACTGTCCGCGCTGCTCCGCGCCGACGATGGA
GGACGAGCTGTCTCAGTTCGGGATGTGCTCTCAGTGCAAGGCGGACGAAA
TTTCGGCCGTGGCTTACAGCGGGCCGGCGGTGGCAAGCAAGTACACGTAC
GACAATGGCGACGCGCCCTTCAGCTCCTCGTGGACAACGTCCACCTCTAC
GAAAGGCAGAGGGACTCCTCCCGATAAGCCAGACCCTGAAATCTCAACGG
CGACCCGCATACGTAACGGGGCCCGCGCTGCTGCTGCTGCTGCAGCTGCG
GCTGCTGCTTCTAATGGCGGTGGTAGTGCTGCTGCTAACCGTGATGGTAC
TCCTTTTGCTACTGCTGCTGCTACTGGTAGTGGTGGCGGCGGCGGTGGGA
GGGGTGACATTTCTGGGGATAGGGTTAGCGGCGGAGAGGGCAGCGAAGCG
GTGCAGAAATTGTCGTTGGAGGTGGCTGAGCTCCGCTCGCTAGTGGGAGC
GACTCGTGCGGCGCTCGGGAAGAGGGGAACGGAGCACCCAGGGGTGGTGG
GGACAACGGCGGCGGCGGCGGCGGCCAGCGCGAAAGACGGACAGCGGGAT
GCCGCCGTTAGAAAGCTGGCTCGAGATGTCGCCGAGTTGCGCGCGGACCT
CGCAAGCGTGGCGGCCAGGGATGGCGCGGTCGGGGCTCGGGAAGGAGGCA
CGGAGGCGGTGCAGAGGCTGTCGAGGGAGGTCACGGAGCTACGCTCGCAG
CTGGAGCAATCGCGCAAGGAGCACGCCATGACACGAACGACTCTTCGGAG
GCTGAAGGACGGGGTAGACGGCTTGGTCGAGCGAGACGCGCAGCGGTAGG
CGGACGAAATTTCGGCCGTGGCTTACAGCGGGCCGGCGGTGGCAAGCAAG
TACACGTACGACAATGGCGACGCGCCCTTCAGCTCCTCGTGGACAACGTC
CACCTCTACGAAAGGCAGAGGGACTCCTCCCGATAAGCCAGACCCTGAAA
TCTCAACGGCGACCCGCATACGTAACGGGGCCCGCGCTGCTGCTGCTGCT
GCAGCTGCGGCTGCTGCTTCTAATGGCGGTGGTAGTGCTGCTGCTAACCG
TGATGGTACTCCTTTTGCTACTGCTGCTGCTACTGGTAGTGGTGGCGGCG
GCGGTGGGAGGGGTGACATTTCTGGGGATAGGGTTAGCGGCGGAGAGGGC
AGCGAAGCGGTGCAGAAATTGTCGTTGGAGGTGGCTGAGCTCCGCTCGCT
AGTGGGAGCGACTCGTGCGGCGCTCGGGAAGAGGGGAACGGAGCACCCAG
GGGTGGTGGGGACAACGGCGGCGGCGGCGGCGGCCAGCGCGAAAGACGGA
CAGCGGGATGCCGCCGTTAGAAAGCTGGCTCGAGATGTCGCCGAGTTGCG
CGCGGACCTCGCAAGCGTGGCGGCCAGGGATGGCGCGGTCGGGGCTCGGG
AAGGAGGCACGGAGGCGGTGCAGAGGCTGTCGAGGGAGGTCACGGAGCTA
CGCTCGCAGCTGGAGCAATCGCGCAAGGAGCACGCCATGACACGAACGAC
TCTTCGGAGGCTGAAGGACGGGGTAGACGGCTTGGTCGAGCGAGACGCGC
AGCGGTAG
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