mRNA_M-pyrifera_M_contig108461.1793.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108461.1793.1
Unique NamemRNA_M-pyrifera_M_contig108461.1793.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig108461.1793.1 vs. uniprot
Match: A0A7S1G7X7_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G7X7_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 9.970e-15
Identity = 54/174 (31.03%), Postives = 88/174 (50.57%), Query Frame = 1 
Query:   22 ACIVSGILLLLVWLLALRNYRRVLVLARRGRWPLVLPNVQIGKAASFIGVALAQTILSFFFTASIIFVVGFLLTWEDSR-------KWLWRAAKDALPSILSASIIITVVEFILLRFLLAHGTDIHHRRLFILGDGFFVFANLFNGAVVAVIRLVTSLLLLAIGFSRPDVSNLP 522
            A  +S +L++L+W +  R YRR ++  RRG++      +    A ++IG      + +     +I+FVV F L W  S        K++     +   S++S S++I + E + L  + + G DI H R F L DGFF+FA    GAVV   R + +  L  + F+R D + LP
Sbjct:  340 AATLSFLLIVLLWYMVFRRYRRNILDMRRGKYFFDKTRISAKGAVNYIGTQGWHAVFAQLVIFAILFVVVFTLNWVVSDGIGAVLLKYVNIDLSEVFWSLVSVSLVIKIAEIVYLGCITSRGQDIFHFRAFALADGFFIFAGWVKGAVVVSARFIVTFFLGLVSFARVDDAQLP 513
[Close]
BLAST of mRNA_M-pyrifera_M_contig108461.1793.1 vs. uniprot
Match: A0A7S1G9F2_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G9F2_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.150e-14
Identity = 54/174 (31.03%), Postives = 88/174 (50.57%), Query Frame = 1 
Query:   22 ACIVSGILLLLVWLLALRNYRRVLVLARRGRWPLVLPNVQIGKAASFIGVALAQTILSFFFTASIIFVVGFLLTWEDSR-------KWLWRAAKDALPSILSASIIITVVEFILLRFLLAHGTDIHHRRLFILGDGFFVFANLFNGAVVAVIRLVTSLLLLAIGFSRPDVSNLP 522
            A  +S +L++L+W +  R YRR ++  RRG++      +    A ++IG      + +     +I+FVV F L W  S        K++     +   S++S S++I + E + L  + + G DI H R F L DGFF+FA    GAVV   R + +  L  + F+R D + LP
Sbjct: 1725 AATLSFLLIVLLWYMVFRRYRRNILDMRRGKYFFDKTRISAKGAVNYIGTQGWHAVFAQLVIFAILFVVVFTLNWVVSDGIGAVLLKYVNIDLSEVFWSLVSVSLVIKIAEIVYLGCITSRGQDIFHFRAFALADGFFIFAGWVKGAVVVSARFIVTFFLGLVSFARVDDAQLP 1898
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108461.1793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S1G7X7_9STRA9.970e-1531.03Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S1G9F2_9STRA1.150e-1431.03Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108461contigM-pyrifera_M_contig108461:1..525 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size525
Cds size525
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815594.5677757-CDS-M-pyrifera_M_contig108461:0..5251622815594.5677757-CDS-M-pyrifera_M_contig108461:0..525Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108461 1..525 -
1692277479.4063244-CDS-M-pyrifera_M_contig108461:0..5251692277479.4063244-CDS-M-pyrifera_M_contig108461:0..525Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108461 1..525 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108461.1793.1prot_M-pyrifera_M_contig108461.1793.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108461 1..525 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108461.1793.1

>prot_M-pyrifera_M_contig108461.1793.1 ID=prot_M-pyrifera_M_contig108461.1793.1|Name=mRNA_M-pyrifera_M_contig108461.1793.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=175bp
MLGIARFACIVSGILLLLVWLLALRNYRRVLVLARRGRWPLVLPNVQIGK
AASFIGVALAQTILSFFFTASIIFVVGFLLTWEDSRKWLWRAAKDALPSI
LSASIIITVVEFILLRFLLAHGTDIHHRRLFILGDGFFVFANLFNGAVVA
VIRLVTSLLLLAIGFSRPDVSNLPR
back to top

mRNA from alignment at M-pyrifera_M_contig108461:1..525-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108461.1793.1 ID=mRNA_M-pyrifera_M_contig108461.1793.1|Name=mRNA_M-pyrifera_M_contig108461.1793.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=525bp|location=Sequence derived from alignment at M-pyrifera_M_contig108461:1..525- (Macrocystis pyrifera P11B4 male)
ATGCTTGGGATTGCACGTTTTGCTTGCATAGTGTCTGGTATCTTATTGTT
GCTCGTGTGGCTGTTGGCGTTACGCAATTACCGTCGCGTCCTTGTTCTTG
CGAGACGAGGTCGCTGGCCGCTTGTCCTTCCAAACGTGCAAATAGGGAAA
GCTGCTTCCTTCATTGGGGTTGCCCTTGCGCAGACTATCTTGTCGTTCTT
CTTCACCGCTAGTATCATTTTTGTTGTTGGATTCTTGCTTACCTGGGAAG
ATTCTCGCAAGTGGTTGTGGAGAGCTGCGAAAGATGCTCTGCCATCAATT
CTTAGTGCGTCAATTATCATCACCGTCGTGGAATTTATCCTTCTTCGTTT
TCTCTTGGCACATGGAACTGATATTCATCACCGTCGTCTCTTTATTCTTG
GAGACGGTTTCTTTGTGTTTGCAAACCTCTTCAATGGTGCAGTTGTGGCA
GTCATTCGTCTTGTCACATCTCTCCTTCTCCTTGCTATTGGATTCTCACG
ACCTGATGTTTCCAACCTTCCTCGT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig108461:1..525-

>mRNA_M-pyrifera_M_contig108461.1793.1 ID=mRNA_M-pyrifera_M_contig108461.1793.1|Name=mRNA_M-pyrifera_M_contig108461.1793.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1050bp|location=Sequence derived from alignment at M-pyrifera_M_contig108461:1..525- (Macrocystis pyrifera P11B4 male)
ATGCTTGGGATTGCACGTTTTGCTTGCATAGTGTCTGGTATCTTATTGTT
GCTCGTGTGGCTGTTGGCGTTACGCAATTACCGTCGCGTCCTTGTTCTTG
CGAGACGAGGTCGCTGGCCGCTTGTCCTTCCAAACGTGCAAATAGGGAAA
GCTGCTTCCTTCATTGGGGTTGCCCTTGCGCAGACTATCTTGTCGTTCTT
CTTCACCGCTAGTATCATTTTTGTTGTTGGATTCTTGCTTACCTGGGAAG
ATTCTCGCAAGTGGTTGTGGAGAGCTGCGAAAGATGCTCTGCCATCAATT
CTTAGTGCGTCAATTATCATCACCGTCGTGGAATTTATCCTTCTTCGTTT
TCTCTTGGCACATGGAACTGATATTCATCACCGTCGTCTCTTTATTCTTG
GAGACGGTTTCTTTGTGTTTGCAAACCTCTTCAATGGTGCAGTTGTGGCA
GTCATTCGTCTTGTCACATCTCTCCTTCTCCTTGCTATTGGATTCTCACG
ACCTGATGTTTCCAACCTTCCTCGTATGCTTGGGATTGCACGTTTTGCTT
GCATAGTGTCTGGTATCTTATTGTTGCTCGTGTGGCTGTTGGCGTTACGC
AATTACCGTCGCGTCCTTGTTCTTGCGAGACGAGGTCGCTGGCCGCTTGT
CCTTCCAAACGTGCAAATAGGGAAAGCTGCTTCCTTCATTGGGGTTGCCC
TTGCGCAGACTATCTTGTCGTTCTTCTTCACCGCTAGTATCATTTTTGTT
GTTGGATTCTTGCTTACCTGGGAAGATTCTCGCAAGTGGTTGTGGAGAGC
TGCGAAAGATGCTCTGCCATCAATTCTTAGTGCGTCAATTATCATCACCG
TCGTGGAATTTATCCTTCTTCGTTTTCTCTTGGCACATGGAACTGATATT
CATCACCGTCGTCTCTTTATTCTTGGAGACGGTTTCTTTGTGTTTGCAAA
CCTCTTCAATGGTGCAGTTGTGGCAGTCATTCGTCTTGTCACATCTCTCC
TTCTCCTTGCTATTGGATTCTCACGACCTGATGTTTCCAACCTTCCTCGT
back to top