mRNA_M-pyrifera_M_contig108449.1790.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108449.1790.1
Unique NamemRNA_M-pyrifera_M_contig108449.1790.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig108449.1790.1 vs. uniprot
Match: A9G0T6_SORC5 (Putative_PNPOx domain-containing protein n=3 Tax=Sorangium cellulosum TaxID=56 RepID=A9G0T6_SORC5)

HSP 1 Score: 53.9 bits (128), Expect = 1.310e-7
Identity = 25/34 (73.53%), Postives = 27/34 (79.41%), Query Frame = 1
Query:    1 RDALSRLAESKGPEELITYRRQKNTTSIDGLPAL 102
            RD LS+ AE KGPE L  YRR+KNTTSIDGLP L
Sbjct:  146 RDTLSKWAERKGPEGLSRYRREKNTTSIDGLPGL 179          
BLAST of mRNA_M-pyrifera_M_contig108449.1790.1 vs. uniprot
Match: A0A0Q9TLT8_9MICO (Pyridoxamine 5'-phosphate oxidase n=2 Tax=Intrasporangiaceae TaxID=85021 RepID=A0A0Q9TLT8_9MICO)

HSP 1 Score: 52.4 bits (124), Expect = 5.720e-7
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 1
Query:    1 RDALSRLAESKGPEELITYRRQKNTTSIDGLPALDP 108
            RD L+R A ++G E L TYR +KN TSIDGLPALDP
Sbjct:  146 RDLLTRWAGNRGDEGLATYRAEKNATSIDGLPALDP 181          
BLAST of mRNA_M-pyrifera_M_contig108449.1790.1 vs. uniprot
Match: UPI001E328EE0 (pyridoxamine 5'-phosphate oxidase family protein n=1 Tax=Microbacterium sp. F2E TaxID=2895284 RepID=UPI001E328EE0)

HSP 1 Score: 50.4 bits (119), Expect = 2.620e-6
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = 1
Query:    1 RDALSRLAESKGPEELITYRRQKNTTSIDGLPALDP 108
            R  +   A+ KGP+ L  YRRQKNT S+DGLPALDP
Sbjct:  149 RGIMGPWADKKGPDGLAAYRRQKNTQSLDGLPALDP 184          
BLAST of mRNA_M-pyrifera_M_contig108449.1790.1 vs. uniprot
Match: D1ABB2_THECD (Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein n=1 Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / KCTC 9072 / NBRC 15933 / NCIMB 10081 / Henssen B9) TaxID=471852 RepID=D1ABB2_THECD)

HSP 1 Score: 50.4 bits (119), Expect = 2.650e-6
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = 1
Query:    1 RDALSRLAESKGPEELITYRRQKNTTSIDGLPALDP 108
            R+ L   +  K PE+   YRR+KNTTSIDGLPALDP
Sbjct:  147 REHLKDWSRRKSPEDFAAYRREKNTTSIDGLPALDP 182          
BLAST of mRNA_M-pyrifera_M_contig108449.1790.1 vs. uniprot
Match: UPI001E39A1F8 (pyridoxamine 5'-phosphate oxidase family protein n=2 Tax=unclassified Nocardioides TaxID=2615069 RepID=UPI001E39A1F8)

HSP 1 Score: 49.7 bits (117), Expect = 5.520e-6
Identity = 22/39 (56.41%), Postives = 28/39 (71.79%), Query Frame = 1
Query:    1 RDALSRLAESKGPEELITYRRQKNTTSIDGLPALDPHDD 117
            RD L+   E +GP+ ++ YRR+KN TSIDGLPA D  DD
Sbjct:  147 RDLLTPNMERRGPDGVLAYRRRKNRTSIDGLPAFDDDDD 185          
BLAST of mRNA_M-pyrifera_M_contig108449.1790.1 vs. uniprot
Match: UPI0017858AF0 (pyridoxamine 5'-phosphate oxidase family protein n=1 Tax=Cellulosimicrobium arenosum TaxID=2708133 RepID=UPI0017858AF0)

HSP 1 Score: 49.7 bits (117), Expect = 5.970e-6
Identity = 23/35 (65.71%), Postives = 26/35 (74.29%), Query Frame = 1
Query:    1 RDALSRLAESKGPEELITYRRQKNTTSIDGLPALD 105
            RD L R AE K PE+L  YR  KNT+SIDGLPA+D
Sbjct:  149 RDLLDRWAERKSPEQLDDYRALKNTSSIDGLPAID 183          
BLAST of mRNA_M-pyrifera_M_contig108449.1790.1 vs. uniprot
Match: UPI00096E2FF0 (pyridoxamine 5'-phosphate oxidase family protein n=1 Tax=Intrasporangium flavum TaxID=1428657 RepID=UPI00096E2FF0)

HSP 1 Score: 49.3 bits (116), Expect = 7.130e-6
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = 1
Query:    1 RDALSRLAESKGPEELITYRRQKNTTSIDGLPALDP 108
            RD L+  A  +GPE L  YR +KN TS+DGLPALDP
Sbjct:  147 RDLLTSWAGRRGPEGLAAYRVEKNATSVDGLPALDP 182          
BLAST of mRNA_M-pyrifera_M_contig108449.1790.1 vs. uniprot
Match: UPI001EF950B1 (pyridoxamine 5'-phosphate oxidase family protein n=1 Tax=Microlunatus panaciterrae TaxID=400768 RepID=UPI001EF950B1)

HSP 1 Score: 48.5 bits (114), Expect = 1.240e-5
Identity = 23/35 (65.71%), Postives = 24/35 (68.57%), Query Frame = 1
Query:    1 RDALSRLAESKGPEELITYRRQKNTTSIDGLPALD 105
            RD L    E KGPE +  YRRQKN TSIDGLPA D
Sbjct:  136 RDLLPAHMERKGPEGVAAYRRQKNRTSIDGLPAYD 170          
BLAST of mRNA_M-pyrifera_M_contig108449.1790.1 vs. uniprot
Match: UPI000A068D08 (pyridoxamine 5'-phosphate oxidase family protein n=1 Tax=Demequina sp. NBRC 110056 TaxID=1570345 RepID=UPI000A068D08)

HSP 1 Score: 48.1 bits (113), Expect = 1.920e-5
Identity = 22/38 (57.89%), Postives = 25/38 (65.79%), Query Frame = 1
Query:    1 RDALSRLAESKGPEELITYRRQKNTTSIDGLPALDPHD 114
            RD L R A  KG E L  YR +KN  S+DGLPAL PH+
Sbjct:  145 RDELDRWARGKGDEGLREYRERKNAVSLDGLPALAPHE 182          
BLAST of mRNA_M-pyrifera_M_contig108449.1790.1 vs. uniprot
Match: UPI000A020AFD (pyridoxamine 5'-phosphate oxidase family protein n=2 Tax=Demequina TaxID=577469 RepID=UPI000A020AFD)

HSP 1 Score: 48.1 bits (113), Expect = 1.920e-5
Identity = 21/38 (55.26%), Postives = 28/38 (73.68%), Query Frame = 1
Query:    1 RDALSRLAESKGPEELITYRRQKNTTSIDGLPALDPHD 114
            R+ L+R A  KGP+ L  Y ++KN TS+DGLPAL PH+
Sbjct:  145 REQLNRWARGKGPDGLRDYWQRKNATSLDGLPALAPHE 182          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108449.1790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A9G0T6_SORC51.310e-773.53Putative_PNPOx domain-containing protein n=3 Tax=S... [more]
A0A0Q9TLT8_9MICO5.720e-766.67Pyridoxamine 5'-phosphate oxidase n=2 Tax=Intraspo... [more]
UPI001E328EE02.620e-661.11pyridoxamine 5'-phosphate oxidase family protein n... [more]
D1ABB2_THECD2.650e-661.11Pyridoxamine 5'-phosphate oxidase-related FMN-bind... [more]
UPI001E39A1F85.520e-656.41pyridoxamine 5'-phosphate oxidase family protein n... [more]
UPI0017858AF05.970e-665.71pyridoxamine 5'-phosphate oxidase family protein n... [more]
UPI00096E2FF07.130e-661.11pyridoxamine 5'-phosphate oxidase family protein n... [more]
UPI001EF950B11.240e-565.71pyridoxamine 5'-phosphate oxidase family protein n... [more]
UPI000A068D081.920e-557.89pyridoxamine 5'-phosphate oxidase family protein n... [more]
UPI000A020AFD1.920e-555.26pyridoxamine 5'-phosphate oxidase family protein n... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108449contigM-pyrifera_M_contig108449:1..120 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size120
Cds size120
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815594.3760514-CDS-M-pyrifera_M_contig108449:0..1201622815594.3760514-CDS-M-pyrifera_M_contig108449:0..120Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108449 1..120 +
1692277479.3737-CDS-M-pyrifera_M_contig108449:0..1201692277479.3737-CDS-M-pyrifera_M_contig108449:0..120Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108449 1..120 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108449.1790.1prot_M-pyrifera_M_contig108449.1790.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108449 1..120 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108449.1790.1

>prot_M-pyrifera_M_contig108449.1790.1 ID=prot_M-pyrifera_M_contig108449.1790.1|Name=mRNA_M-pyrifera_M_contig108449.1790.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=40bp
RDALSRLAESKGPEELITYRRQKNTTSIDGLPALDPHDD*
back to top

mRNA from alignment at M-pyrifera_M_contig108449:1..120+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108449.1790.1 ID=mRNA_M-pyrifera_M_contig108449.1790.1|Name=mRNA_M-pyrifera_M_contig108449.1790.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=120bp|location=Sequence derived from alignment at M-pyrifera_M_contig108449:1..120+ (Macrocystis pyrifera P11B4 male)
CGAGACGCACTGTCACGCTTGGCAGAATCCAAAGGGCCAGAGGAATTGAT CACCTACCGCCGACAAAAGAACACCACCAGTATCGACGGCTTACCTGCCC TCGATCCACATGATGACTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig108449:1..120+

>mRNA_M-pyrifera_M_contig108449.1790.1 ID=mRNA_M-pyrifera_M_contig108449.1790.1|Name=mRNA_M-pyrifera_M_contig108449.1790.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=240bp|location=Sequence derived from alignment at M-pyrifera_M_contig108449:1..120+ (Macrocystis pyrifera P11B4 male)
CGAGACGCACTGTCACGCTTGGCAGAATCCAAAGGGCCAGAGGAATTGAT
CACCTACCGCCGACAAAAGAACACCACCAGTATCGACGGCTTACCTGCCC
TCGATCCACATGATGACTGACGAGACGCACTGTCACGCTTGGCAGAATCC
AAAGGGCCAGAGGAATTGATCACCTACCGCCGACAAAAGAACACCACCAG
TATCGACGGCTTACCTGCCCTCGATCCACATGATGACTGA
back to top