mRNA_M-pyrifera_M_contig108421.1788.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108421.1788.1
Unique NamemRNA_M-pyrifera_M_contig108421.1788.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig108421.1788.1 vs. uniprot
Match: A0A7R9XV71_MICPS (Sulfotransferase (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9XV71_MICPS)

HSP 1 Score: 60.8 bits (146), Expect = 1.710e-9
Identity = 28/65 (43.08%), Postives = 41/65 (63.08%), Query Frame = 1 
Query:    1 IARHLGLEEAYVQEGETLEEG-IDRLLPRMGFEYMKSHLELFSPRSVKWRDPNFTFVRRGVVGGH 192
            IA H+ L  +    G  L E  +D +  + GF+ MK+ ++ F PRSV+WRDP + F+R+GVVG H
Sbjct:  136 IADHVLLNASPADRGPRLTEAQLDAIAAKCGFDAMKADVDRFQPRSVRWRDPEYCFIRKGVVGDH 200
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BLAST of mRNA_M-pyrifera_M_contig108421.1788.1 vs. uniprot
Match: C1N7H0_MICPC (Sulfotransferase n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N7H0_MICPC)

HSP 1 Score: 60.8 bits (146), Expect = 2.990e-9
Identity = 28/65 (43.08%), Postives = 41/65 (63.08%), Query Frame = 1 
Query:    1 IARHLGLEEAYVQEGETLEEG-IDRLLPRMGFEYMKSHLELFSPRSVKWRDPNFTFVRRGVVGGH 192
            IA H+ L  +    G  L E  +D +  + GF+ MK+ ++ F PRSV+WRDP + F+R+GVVG H
Sbjct:  192 IADHVLLNASPADRGPRLTEAQLDAIAAKCGFDAMKADVDRFQPRSVRWRDPEYCFIRKGVVGDH 256
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108421.1788.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7R9XV71_MICPS1.710e-943.08Sulfotransferase (Fragment) n=1 Tax=Micromonas pus... [more]
C1N7H0_MICPC2.990e-943.08Sulfotransferase n=1 Tax=Micromonas pusilla (strai... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108421contigM-pyrifera_M_contig108421:403..612 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score63.5
Seed ortholog evalue4.4e-08
Seed eggNOG ortholog38833.XP_003063735.1
KEGG rclassRC00007,RC00883
KEGG koko:K11821,ko:K22312,ko:K22321
KEGG ReactionR03214,R08167,R08662,R08669,R08671,R11887,R11888
KEGG Pathwayko00380,ko00966,ko01110,ko01210,map00380,map00966,map01110,map01210
KEGG ModuleM00370
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0002376,GO:0003674,GO:0003824,GO:0006082,GO:0006790,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0008146,GO:0008150,GO:0008152,GO:0009058,GO:0009605,GO:0009607,GO:0009611,GO:0009719,GO:0009725,GO:0009753,GO:0009814,GO:0009861,GO:0009987,GO:0010033,GO:0016143,GO:0016144,GO:0016740,GO:0016782,GO:0019748,GO:0019757,GO:0019758,GO:0019760,GO:0019761,GO:0032260,GO:0042221,GO:0043207,GO:0043436,GO:0044237,GO:0044249,GO:0044272,GO:0044281,GO:0044550,GO:0045087,GO:0047364,GO:0050896,GO:0051704,GO:0051707,GO:0071704,GO:0080066,GO:0080067,GO:0080068,GO:0080069,GO:0080070,GO:0080071,GO:0098542,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659,GO:1901700
EggNOG free text desc.Belongs to the sulfotransferase 1 family
EggNOG OGs37RMI@33090,KOG1584@1,KOG1584@2759
EC2.8.2.24,2.8.2.38,2.8.2.39
COG Functional cat.S
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815594.3071158-CDS-M-pyrifera_M_contig108421:402..6121622815594.3071158-CDS-M-pyrifera_M_contig108421:402..612Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108421 403..612 -
1692277479.350337-CDS-M-pyrifera_M_contig108421:402..6121692277479.350337-CDS-M-pyrifera_M_contig108421:402..612Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108421 403..612 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108421.1788.1prot_M-pyrifera_M_contig108421.1788.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108421 403..612 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108421.1788.1

>prot_M-pyrifera_M_contig108421.1788.1 ID=prot_M-pyrifera_M_contig108421.1788.1|Name=mRNA_M-pyrifera_M_contig108421.1788.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=70bp
IARHLGLEEAYVQEGETLEEGIDRLLPRMGFEYMKSHLELFSPRSVKWRD
PNFTFVRRGVVGGHGDCFDD
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mRNA from alignment at M-pyrifera_M_contig108421:403..612-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108421.1788.1 ID=mRNA_M-pyrifera_M_contig108421.1788.1|Name=mRNA_M-pyrifera_M_contig108421.1788.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=210bp|location=Sequence derived from alignment at M-pyrifera_M_contig108421:403..612- (Macrocystis pyrifera P11B4 male)
ATAGCGAGGCATCTGGGGCTCGAAGAAGCGTATGTGCAGGAGGGAGAGAC
TCTCGAGGAGGGCATCGACCGTCTCCTGCCGCGCATGGGCTTCGAGTACA
TGAAGAGCCACCTGGAGCTGTTCAGCCCTCGGTCAGTGAAGTGGAGAGAC
CCGAACTTCACTTTCGTGAGGAGAGGTGTTGTGGGAGGCCATGGAGACTG
CTTTGACGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108421:403..612-

>mRNA_M-pyrifera_M_contig108421.1788.1 ID=mRNA_M-pyrifera_M_contig108421.1788.1|Name=mRNA_M-pyrifera_M_contig108421.1788.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig108421:403..612- (Macrocystis pyrifera P11B4 male)
ATAGCGAGGCATCTGGGGCTCGAAGAAGCGTATGTGCAGGAGGGAGAGAC
TCTCGAGGAGGGCATCGACCGTCTCCTGCCGCGCATGGGCTTCGAGTACA
TGAAGAGCCACCTGGAGCTGTTCAGCCCTCGGTCAGTGAAGTGGAGAGAC
CCGAACTTCACTTTCGTGAGGAGAGGTGTTGTGGGAGGCCATGGAGACTG
CTTTGACGACATAGCGAGGCATCTGGGGCTCGAAGAAGCGTATGTGCAGG
AGGGAGAGACTCTCGAGGAGGGCATCGACCGTCTCCTGCCGCGCATGGGC
TTCGAGTACATGAAGAGCCACCTGGAGCTGTTCAGCCCTCGGTCAGTGAA
GTGGAGAGACCCGAACTTCACTTTCGTGAGGAGAGGTGTTGTGGGAGGCC
ATGGAGACTGCTTTGACGAC
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