mRNA_M-pyrifera_M_contig108418.1786.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108418.1786.1
Unique NamemRNA_M-pyrifera_M_contig108418.1786.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig108418.1786.1 vs. uniprot
Match: A0A8H7RZV9_9FUNG (Glutaredoxin domain-containing protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7RZV9_9FUNG)

HSP 1 Score: 103 bits (258), Expect = 9.920e-27
Identity = 46/78 (58.97%), Postives = 61/78 (78.21%), Query Frame = 1
Query:   64 KFVDDAVNSKQVVVFSKTYCPYCTRAKKELQRQGASDMLVVELDKRGDGGAIQSALQAKTGQRTVPNVFINQEHVGGC 297
            + V+DA+ + ++ VFSK+YCPYCTRAK+ LQ  G  +  V+ELDK  +G AIQ  LQ K+GQRTVPN+FIN+EH+GGC
Sbjct:   22 QIVEDAIKNNKIAVFSKSYCPYCTRAKRLLQELG-QEFFVIELDKEANGAAIQDYLQKKSGQRTVPNIFINEEHIGGC 98          
BLAST of mRNA_M-pyrifera_M_contig108418.1786.1 vs. uniprot
Match: A0A163BDD7_PHYB8 (Glutaredoxin domain-containing protein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A163BDD7_PHYB8)

HSP 1 Score: 100 bits (248), Expect = 1.970e-25
Identity = 47/78 (60.26%), Postives = 60/78 (76.92%), Query Frame = 1
Query:   64 KFVDDAVNSKQVVVFSKTYCPYCTRAKKELQRQGASDMLVVELDKRGDGGAIQSALQAKTGQRTVPNVFINQEHVGGC 297
            KFV+D++ + +VVVFSK+YCPYCT+AKK L      ++ +VELDK  DG AIQ  LQ  TGQRTVPN+FIN +H+GGC
Sbjct:    6 KFVNDSIANNKVVVFSKSYCPYCTKAKKILADLKV-EVFIVELDKHADGAAIQDYLQTLTGQRTVPNIFINTKHIGGC 82          
BLAST of mRNA_M-pyrifera_M_contig108418.1786.1 vs. uniprot
Match: A0A024TXH1_9STRA (Glutaredoxin n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TXH1_9STRA)

HSP 1 Score: 100 bits (248), Expect = 3.090e-25
Identity = 54/93 (58.06%), Postives = 65/93 (69.89%), Query Frame = 1
Query:   22 MGASSSSEATPEAAKFVDDAVNSKQVVVFSKTYCPYCTRAKKELQRQGASDMLVVELDKRGDGGAIQSALQAKTGQRTVPNVFINQEHVGGCT 300
            MG+++SS ATPEAA FV  A+N+  V +FSKTYCPYC  AKK L   GA    V+EL+KR DG AIQS L+  TG+ TVPNVFI    +GG T
Sbjct:    1 MGSNNSSGATPEAAAFVQQAINTNGVTIFSKTYCPYCDMAKKTLTSVGAQ-FEVIELNKRPDGDAIQSVLEELTGRDTVPNVFIKTTTIGGGT 92          
BLAST of mRNA_M-pyrifera_M_contig108418.1786.1 vs. uniprot
Match: A0A367JTR4_RHIAZ (Glutaredoxin domain-containing protein n=5 Tax=Rhizopus TaxID=4842 RepID=A0A367JTR4_RHIAZ)

HSP 1 Score: 99.8 bits (247), Expect = 3.710e-25
Identity = 49/92 (53.26%), Postives = 65/92 (70.65%), Query Frame = 1
Query:   22 MGASSSSEATPEAAKFVDDAVNSKQVVVFSKTYCPYCTRAKKELQRQGASDMLVVELDKRGDGGAIQSALQAKTGQRTVPNVFINQEHVGGC 297
            MG+S S E   +A   V++ + + ++VVFSKTYCPYC RAK+ L++ G     V+ELD    G AIQ  LQ KTGQRTVPN+FIN++H+GGC
Sbjct:    1 MGSSISQEEMTKAQDIVEEIIKTNKIVVFSKTYCPYCHRAKEVLKQHGVQ-FFVMELDVEELGSAIQQYLQEKTGQRTVPNIFINEQHIGGC 91          
BLAST of mRNA_M-pyrifera_M_contig108418.1786.1 vs. uniprot
Match: A0A1C7N993_9FUNG (Glutaredoxin-1 n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7N993_9FUNG)

HSP 1 Score: 99.8 bits (247), Expect = 4.150e-25
Identity = 49/96 (51.04%), Postives = 65/96 (67.71%), Query Frame = 1
Query:   22 MGASSSSEATPEAA----KFVDDAVNSKQVVVFSKTYCPYCTRAKKELQRQGASDMLVVELDKRGDGGAIQSALQAKTGQRTVPNVFINQEHVGGC 297
            MG   S + +PE      + V++ +N+ ++ VFSK+YCPYC +AKK LQ  G  +   +ELD   DG AIQ  LQ KTGQRTVPN+F+NQ+HVGGC
Sbjct:    1 MGGLQSKQLSPEEMSKIQQVVEEIINNNKIAVFSKSYCPYCQKAKKLLQDLGY-EFFAIELDNESDGAAIQQYLQEKTGQRTVPNIFVNQQHVGGC 95          
BLAST of mRNA_M-pyrifera_M_contig108418.1786.1 vs. uniprot
Match: A5DE43_PICGU (Glutaredoxin domain-containing protein n=1 Tax=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) TaxID=294746 RepID=A5DE43_PICGU)

HSP 1 Score: 98.6 bits (244), Expect = 1.220e-24
Identity = 45/86 (52.33%), Postives = 64/86 (74.42%), Query Frame = 1
Query:   37 SSEATPEAAKFVDDAVNSKQVVVFSKTYCPYCTRAKKELQRQGASDMLVVELDKRGDGGAIQSALQAKTGQRTVPNVFINQEHVGG 294
            S  ++PE    V   +N+ ++VVFSK+YCPYC++ K+ L + GASD+ ++EL+   DG A+Q+ALQ  TGQRTVPN FINQ+H+GG
Sbjct:   11 SEPSSPEVISKVQSLINANKIVVFSKSYCPYCSQTKQLLNQVGASDVNIIELNNVSDGAAMQNALQEITGQRTVPNTFINQKHIGG 96          
BLAST of mRNA_M-pyrifera_M_contig108418.1786.1 vs. uniprot
Match: A0A6G0WQ32_9STRA (Glutaredoxin domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WQ32_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.630e-24
Identity = 48/85 (56.47%), Postives = 63/85 (74.12%), Query Frame = 1
Query:   40 SEATPEAAKFVDDAVNSKQVVVFSKTYCPYCTRAKKELQRQGASDMLVVELDKRGDGGAIQSALQAKTGQRTVPNVFINQEHVGG 294
            S++TPEAA FV +A+N+  + +FSKTYCPYC +AK+ L   GA   +V+ELD+R DG AIQSALQ  TG+ TVPNVF+    +GG
Sbjct:    4 SQSTPEAAAFVQNAINTNDITIFSKTYCPYCHQAKQVLTSVGAK-YVVIELDERSDGAAIQSALQELTGRSTVPNVFVKTTTIGG 87          
BLAST of mRNA_M-pyrifera_M_contig108418.1786.1 vs. uniprot
Match: A0A0B7NF85_9FUNG (Glutaredoxin domain-containing protein n=1 Tax=Parasitella parasitica TaxID=35722 RepID=A0A0B7NF85_9FUNG)

HSP 1 Score: 98.2 bits (243), Expect = 1.730e-24
Identity = 51/96 (53.12%), Postives = 65/96 (67.71%), Query Frame = 1
Query:   22 MGASSSSEATPEAAKFVDDAVNS----KQVVVFSKTYCPYCTRAKKELQRQGASDMLVVELDKRGDGGAIQSALQAKTGQRTVPNVFINQEHVGGC 297
            MG+ SS + TPE    + D V       +VVVFSK+YCP+C +AK+ L   G  D  V+ELDK  DG A+Q  L+ KTGQRTVPN+FINQ+H+GGC
Sbjct:    1 MGSLSSKQLTPEEMDLIKDKVEEIIKDNKVVVFSKSYCPFCKKAKQLLTGLGV-DFFVLELDKESDGPAMQDYLKEKTGQRTVPNIFINQKHIGGC 95          
BLAST of mRNA_M-pyrifera_M_contig108418.1786.1 vs. uniprot
Match: A0A162TFB6_MUCCL (Glutaredoxin domain-containing protein n=5 Tax=Mucor TaxID=4830 RepID=A0A162TFB6_MUCCL)

HSP 1 Score: 97.1 bits (240), Expect = 3.330e-24
Identity = 44/78 (56.41%), Postives = 57/78 (73.08%), Query Frame = 1
Query:   64 KFVDDAVNSKQVVVFSKTYCPYCTRAKKELQRQGASDMLVVELDKRGDGGAIQSALQAKTGQRTVPNVFINQEHVGGC 297
            + V+  +N  +V VFSK+YCPYC RAK  L++ G  +  V+ELD   +G AIQ  LQ KTGQRTVPN+FINQ+H+GGC
Sbjct:    6 ELVEKIINENKVAVFSKSYCPYCKRAKDVLKKLGV-EFFVIELDNEANGAAIQDYLQQKTGQRTVPNIFINQKHIGGC 82          
BLAST of mRNA_M-pyrifera_M_contig108418.1786.1 vs. uniprot
Match: A0A397A0K2_9STRA (Glutaredoxin domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397A0K2_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 3.580e-24
Identity = 53/91 (58.24%), Postives = 64/91 (70.33%), Query Frame = 1
Query:   22 MGASSSSEATPEAAKFVDDAVNSKQVVVFSKTYCPYCTRAKKELQRQGASDMLVVELDKRGDGGAIQSALQAKTGQRTVPNVFINQEHVGG 294
            MG+ +S+  TPEAA FV  A+N+  V VFSKTYCPYC +AK  L+  GA+   V+ELDKR DG AIQSAL   TG+ TVPNVFI    +GG
Sbjct:    1 MGSKNSTGTTPEAAAFVQTAINTNGVTVFSKTYCPYCDQAKTALKSAGAT-FEVIELDKRPDGDAIQSALGELTGRFTVPNVFIKTTTIGG 90          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108418.1786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8H7RZV9_9FUNG9.920e-2758.97Glutaredoxin domain-containing protein n=1 Tax=Muc... [more]
A0A163BDD7_PHYB81.970e-2560.26Glutaredoxin domain-containing protein n=1 Tax=Phy... [more]
A0A024TXH1_9STRA3.090e-2558.06Glutaredoxin n=1 Tax=Aphanomyces invadans TaxID=15... [more]
A0A367JTR4_RHIAZ3.710e-2553.26Glutaredoxin domain-containing protein n=5 Tax=Rhi... [more]
A0A1C7N993_9FUNG4.150e-2551.04Glutaredoxin-1 n=1 Tax=Choanephora cucurbitarum Ta... [more]
A5DE43_PICGU1.220e-2452.33Glutaredoxin domain-containing protein n=1 Tax=Mey... [more]
A0A6G0WQ32_9STRA1.630e-2456.47Glutaredoxin domain-containing protein n=1 Tax=Aph... [more]
A0A0B7NF85_9FUNG1.730e-2453.13Glutaredoxin domain-containing protein n=1 Tax=Par... [more]
A0A162TFB6_MUCCL3.330e-2456.41Glutaredoxin domain-containing protein n=5 Tax=Muc... [more]
A0A397A0K2_9STRA3.580e-2458.24Glutaredoxin domain-containing protein n=3 Tax=Aph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108418contigM-pyrifera_M_contig108418:214..571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.1
Seed ortholog evalue1.5e-19
Seed eggNOG ortholog157072.XP_008872881.1
KEGG koko:K03676
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein disulfide oxidoreductase activity
EggNOG OGsCOG0695@1,KOG1752@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110
Exons2
Model size303
Cds size282
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108418.1786.1prot_M-pyrifera_M_contig108418.1786.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108418 235..571 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815594.106345-UTR-M-pyrifera_M_contig108418:213..2341622815594.106345-UTR-M-pyrifera_M_contig108418:213..234Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig108418 214..234 +
1692277479.2246656-UTR-M-pyrifera_M_contig108418:213..2341692277479.2246656-UTR-M-pyrifera_M_contig108418:213..234Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig108418 214..234 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815594.1160784-CDS-M-pyrifera_M_contig108418:234..3441622815594.1160784-CDS-M-pyrifera_M_contig108418:234..344Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108418 235..344 +
1692277479.236855-CDS-M-pyrifera_M_contig108418:234..3441692277479.236855-CDS-M-pyrifera_M_contig108418:234..344Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108418 235..344 +
1622815594.1251626-CDS-M-pyrifera_M_contig108418:399..5711622815594.1251626-CDS-M-pyrifera_M_contig108418:399..571Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108418 400..571 +
1692277479.2467864-CDS-M-pyrifera_M_contig108418:399..5711692277479.2467864-CDS-M-pyrifera_M_contig108418:399..571Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108418 400..571 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108418.1786.1

>prot_M-pyrifera_M_contig108418.1786.1 ID=prot_M-pyrifera_M_contig108418.1786.1|Name=mRNA_M-pyrifera_M_contig108418.1786.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=94bp
MGASSSSEATPEAAKFVDDAVNSKQVVVFSKTYCPYCTRAKKELQRQGAS
DMLVVELDKRGDGGAIQSALQAKTGQRTVPNVFINQEHVGGCT*
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mRNA from alignment at M-pyrifera_M_contig108418:214..571+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108418.1786.1 ID=mRNA_M-pyrifera_M_contig108418.1786.1|Name=mRNA_M-pyrifera_M_contig108418.1786.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=358bp|location=Sequence derived from alignment at M-pyrifera_M_contig108418:214..571+ (Macrocystis pyrifera P11B4 male)
CACCACGCCTTTTCGCGCACAATGGGCGCATCTTCCAGCTCTGAGGCTAC TCCCGAGGCGGCCAAGTTTGTAGATGATGCAGTGAACAGCAAGCAAGTGG TAGTGTTCAGCAAGACATATTGCCCGTACTGGTGCGGCCCGCCAACGCCG CAGCTTGCGCAATCGGCGGCTGACGCGGGTTTGCAGCACACGTGCGAAGA AGGAGTTGCAGCGACAGGGCGCAAGCGATATGCTGGTAGTTGAGCTTGAC AAGCGCGGAGACGGTGGTGCGATTCAGAGCGCGCTGCAGGCGAAAACGGG CCAGCGGACTGTGCCCAACGTGTTCATCAACCAAGAGCACGTCGGCGGAT GTACGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108418:214..571+

>mRNA_M-pyrifera_M_contig108418.1786.1 ID=mRNA_M-pyrifera_M_contig108418.1786.1|Name=mRNA_M-pyrifera_M_contig108418.1786.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=564bp|location=Sequence derived from alignment at M-pyrifera_M_contig108418:214..571+ (Macrocystis pyrifera P11B4 male)
ATGGGCGCATCTTCCAGCTCTGAGGCTACTCCCGAGGCGGCCAAGTTTGT
AGATGATGCAGTGAACAGCAAGCAAGTGGTAGTGTTCAGCAAGACATATT
GCCCGTACTGATGGGCGCATCTTCCAGCTCTGAGGCTACTCCCGAGGCGG
CCAAGTTTGTAGATGATGCAGTGAACAGCAAGCAAGTGGTAGTGTTCAGC
AAGACATATTGCCCGTACTGCACACGTGCGAAGAAGGAGTTGCAGCGACA
GGGCGCAAGCGATATGCTGGTAGTTGAGCTTGACAAGCGCGGAGACGGTG
GTGCGATTCAGAGCGCGCTGCAGGCGAAAACGGGCCAGCGGACTGTGCCC
AACGTGTTCATCAACCAAGAGCACGTCGGCGGATGTACGTGACACACGTG
CGAAGAAGGAGTTGCAGCGACAGGGCGCAAGCGATATGCTGGTAGTTGAG
CTTGACAAGCGCGGAGACGGTGGTGCGATTCAGAGCGCGCTGCAGGCGAA
AACGGGCCAGCGGACTGTGCCCAACGTGTTCATCAACCAAGAGCACGTCG
GCGGATGTACGTGA
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