mRNA_M-pyrifera_M_contig108412.1784.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108412.1784.1
Unique NamemRNA_M-pyrifera_M_contig108412.1784.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig108412.1784.1 vs. uniprot
Match: L8H3D1_ACACA (Nucleotidesugar transporter n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H3D1_ACACA)

HSP 1 Score: 102 bits (254), Expect = 1.880e-23
Identity = 59/139 (42.45%), Postives = 85/139 (61.15%), Query Frame = 1
Query:   10 IGFQALMSSFGGVYSEWLLKKDVSLSLHIKNSYLYAFSVVLNLSFYFA-----LGATEDTPSGFFAGFSPIVALIIAVGSIAGISTALFLRYLDVILKEYAHSMEMFCTAVAVYFLFDEWRGARTLLSVGLACISVTLY 411
            I  QAL SS  G ++EWLLK+D+ + ++ KN YLY FS+  NL+         L +TE     FF G++    +++ +G+  G +TALFLRYL++ILKEYAH  EMF TA A   LFD     +T +S+ +  +SV +Y
Sbjct:  180 ITIQALASSGAGAFNEWLLKRDIKMGINQKNIYLYFFSLCFNLTLILLNRPQILSSTEL----FFNGWTHATVVLVVLGAFCGFTTALFLRYLNIILKEYAHGGEMFATAFASRMLFDVPLTPQTFVSIFVTAVSVVMY 314          
BLAST of mRNA_M-pyrifera_M_contig108412.1784.1 vs. uniprot
Match: A0A836IBQ1_9TRYP (Uncharacterized protein n=1 Tax=Porcisia hertigi TaxID=2761500 RepID=A0A836IBQ1_9TRYP)

HSP 1 Score: 73.2 bits (178), Expect = 1.730e-12
Identity = 45/152 (29.61%), Postives = 81/152 (53.29%), Query Frame = 1
Query:   19 QALMSSFGGVYSEWLLKKDVSLSLHIKNSYLYAFSVVLN---------------------LSFYFALGATEDTPSGFFAGFSPIVALIIAVGSIAGISTALFLRYLDVILKEYAHSMEMFCTAVAVYFLFDEWRGARTLLSVGLACISVTLY 411
            QAL+SS  GVY+E++LKK++ LS+H +N ++Y +S++ N                     +S+  A     DT    +   +P+V L+I  G++ G+S A  L++++VI+K  A ++E+   A+    L  E   A  +++  +  ISV +Y
Sbjct:  239 QALLSSVAGVYNEYVLKKELLLSIHQQNFFMYLYSILFNAVFGLIGNSVIVTNLLGTKTLVSYATAHPMETDTSVSVYQTGTPLVMLLIFFGAVTGLSAAFILKFINVIVKALASAVEVVLAAICAALLLGEALTAHDIIAACIVMISVYMY 390          
BLAST of mRNA_M-pyrifera_M_contig108412.1784.1 vs. uniprot
Match: UPI001F03FCB7 (UDP-galactose transporter senju-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F03FCB7)

HSP 1 Score: 72.8 bits (177), Expect = 1.830e-12
Identity = 51/140 (36.43%), Postives = 80/140 (57.14%), Query Frame = 1
Query:    1 LLLIGFQALMSSFGGVYSEWLLK-KDVSLSLHIKNSYLYAFSVVLNLSFYFALGATED--TPSGFFAGFSPIVALIIAVGSIAGISTALFLRYLDVILKEYAHSMEMFCTAVAVYFLFDEWRGARTLLSVGLACISVTLY 411
            L+L+  Q L S F  VY+E+LLK K   +   I++ ++Y  S++  L + +  G      +P G  A   PIV  II    IAGI TAL L+ L+ ILK++A S+E+  TA+ V+ LF +   + T L++ + C S+ +Y
Sbjct:  174 LMLMLVQILSSCFASVYNEYLLKGKAGDVPFLIQSFFMYLDSIICGLCYMYFNGTFSKAISPEGITAVKQPIVVAIIVNNIIAGIVTALLLKKLNSILKQFAASLEIILTAIFVWLLFGKAITSYTFLAILIVCSSIYVY 313          
BLAST of mRNA_M-pyrifera_M_contig108412.1784.1 vs. uniprot
Match: A0A564Z056_HYMDI (Uncharacterized protein n=1 Tax=Hymenolepis diminuta TaxID=6216 RepID=A0A564Z056_HYMDI)

HSP 1 Score: 67.4 bits (163), Expect = 3.660e-11
Identity = 40/137 (29.20%), Postives = 70/137 (51.09%), Query Frame = 1
Query:    1 LLLIGFQALMSSFGGVYSEWLLKKDVSLSLHIKNSYLYAFSVVLNLSFYFALGATEDTPSGFFAGFSPIVALIIAVGSIAGISTALFLRYLDVILKEYAHSMEMFCTAVAVYFLFDEWRGARTLLSVGLACISVTLY 411
            +++I     +S F  VY+E++LKK V +SL+I+N  LY F +++N + Y    A          GF+ +  L++   +I+GI     ++Y + IL+ +  S  M  T V   F+FD       ++S  L   ++ LY
Sbjct:   54 IIMISIYCTISGFASVYTEYVLKKRVHMSLNIQNGTLYIFGIIINATLYVFQKAIATDDFNLLRGFTFLTWLLVVTQAISGIFIGFVMKYANSILRLFIISSAMIVTTVLSIFIFDLVLKISFIISAALVICALILY 190          
BLAST of mRNA_M-pyrifera_M_contig108412.1784.1 vs. uniprot
Match: A0A7D9IC49_PARCT (CMP-sialic acid transporter 1-like n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IC49_PARCT)

HSP 1 Score: 68.6 bits (166), Expect = 6.430e-11
Identity = 47/140 (33.57%), Postives = 79/140 (56.43%), Query Frame = 1
Query:    1 LLLIGFQALMSSFGGVYSEWLLK-KDVSLSLHIKNSYLYAFSVVLNLSFYFALGATED--TPSGFFAGFSPIVALIIAVGSIAGISTALFLRYLDVILKEYAHSMEMFCTAVAVYFLFDEWRGARTLLSVGLACISVTLY 411
            LLL+  Q   S   GVY+E+LLK K   +    ++ ++Y  S++ N  + +  G+     +P G  A   PIV  II   +IAG+ TA+ L+ L+ ILK++  S+E+  TA+ V+ LF +   + TL ++ + C S+ +Y
Sbjct:  185 LLLMLVQIFSSCIAGVYNEYLLKGKAGDVPFLTQSFFMYLDSIICNFGYMYFNGSFSKAVSPEGLAALKEPIVLAIILNNTIAGLVTAILLKKLNSILKQFGASLEIIFTALLVWLLFGKAITSYTLFAILIVCTSIYIY 324          
BLAST of mRNA_M-pyrifera_M_contig108412.1784.1 vs. uniprot
Match: A0A833RID4_9POAL (CMP-sialic acid transporter 1-like isoform X1 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833RID4_9POAL)

HSP 1 Score: 67.8 bits (164), Expect = 1.090e-10
Identity = 48/135 (35.56%), Postives = 73/135 (54.07%), Query Frame = 1
Query:   22 ALMSSFGGVYSEWLLKKDVSLSLHIKNSYLYAFSVVLNLSFYFALGATEDTPSGF-----FAGFSPIVALIIAVGSIAGISTALFLRYLDVILKEYAHSMEMFCTAVAVYFLFDEWRGARTLLSVGLACISVTLY 411
            A +S+FGGVY+E+LLKK+   SL+ +N  LY   V +N+ +            GF     F G++    L++A  + +G+  +  ++Y D I+K YA SM M  TAV   FLFD     + LL + +  IS+ LY
Sbjct:  172 AFLSAFGGVYTEYLLKKNND-SLYWQNIQLYTCGVFINMGWLIVGDFQSGFEKGFWWQRLFHGYTLTAWLVVANLASSGLLVSWLMKYADNIVKVYATSMAMLLTAVLSQFLFDVKATIQLLLGIIICMISLHLY 305          
BLAST of mRNA_M-pyrifera_M_contig108412.1784.1 vs. uniprot
Match: A0A158QG27_HYMDI (Uncharacterized protein n=2 Tax=Hymenolepis diminuta TaxID=6216 RepID=A0A158QG27_HYMDI)

HSP 1 Score: 67.4 bits (163), Expect = 1.590e-10
Identity = 40/137 (29.20%), Postives = 70/137 (51.09%), Query Frame = 1
Query:    1 LLLIGFQALMSSFGGVYSEWLLKKDVSLSLHIKNSYLYAFSVVLNLSFYFALGATEDTPSGFFAGFSPIVALIIAVGSIAGISTALFLRYLDVILKEYAHSMEMFCTAVAVYFLFDEWRGARTLLSVGLACISVTLY 411
            +++I     +S F  VY+E++LKK V +SL+I+N  LY F +++N + Y    A          GF+ +  L++   +I+GI     ++Y + IL+ +  S  M  T V   F+FD       ++S  L   ++ LY
Sbjct:  203 IIMISIYCTISGFASVYTEYVLKKRVHMSLNIQNGTLYIFGIIINATLYVFQKAIATDDFNLLRGFTFLTWLLVVTQAISGIFIGFVMKYANSILRLFIISSAMIVTTVLSIFIFDLVLKISFIISAALVICALILY 339          
BLAST of mRNA_M-pyrifera_M_contig108412.1784.1 vs. uniprot
Match: W6L344_9TRYP (Uncharacterized protein n=1 Tax=Phytomonas sp. isolate Hart1 TaxID=134013 RepID=W6L344_9TRYP)

HSP 1 Score: 67.4 bits (163), Expect = 1.800e-10
Identity = 39/133 (29.32%), Postives = 73/133 (54.89%), Query Frame = 1
Query:   19 QALMSSFGGVYSEWLLKKDVSLSLHIKNSYLYAFSVVLNLSFYFALGATEDTPSGFFAGFSP--IVALIIAVGSIAGISTALFLRYLDVILKEYAHSMEMFCTAVAVYFLFDEWRGARTLLSVGLACISVTLY 411
            QA +SSF GVY+E++ K D   S+H++N ++Y + ++ N  F F + +  D       G     I  L++ +G+  GIS +  L+++DVI+K  A ++E+  TA+    L  E    + +L+  +   ++ +Y
Sbjct:  220 QAFISSFSGVYNEYMFKSDPGFSIHMQNFFMYLYGILFN--FIFGVLSVPDFYHEVLIGIGQTRIFILLVLIGATTGISASFILKFIDVIVKALASAVEVPLTAILAAVLLGESLYKQDILAAIIVMFAIYMY 350          
BLAST of mRNA_M-pyrifera_M_contig108412.1784.1 vs. uniprot
Match: A0A1V9ZWP5_9STRA (J domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZWP5_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 3.980e-10
Identity = 40/132 (30.30%), Postives = 66/132 (50.00%), Query Frame = 1
Query:   28 MSSFGGVYSEWLLKKDVSLSLHIKNSYLYAFSVVLNLSFYFALGATED----TPSGFFAGFSPIVALIIAVGSIAGISTALFLRYLDVILKEYAHSMEMFCTAVAVYFLFDEWRGARTLLSVGLACISVTLY 411
            +SSFGG+ SE+ LKK+  +S  I+N+Y+Y F ++ N      +G   +      SGFF G++    L++ + ++AG+      +YLD I+  Y H + M  T +     F            G+  IS+ LY
Sbjct:  171 ISSFGGIMSEYALKKNPEMSFFIQNAYMYIFGIIFN-----GIGVISNYSTIASSGFFNGYNSWTWLVVFIQALAGLMMGFIFKYLDNIVCVYTHVIAMMLTTIISILFFAFELTLEFACGFGVCIISMYLY 297          
BLAST of mRNA_M-pyrifera_M_contig108412.1784.1 vs. uniprot
Match: A0A422NRC3_TRYRA (Putative nucleotide sugar transporter n=1 Tax=Trypanosoma rangeli TaxID=5698 RepID=A0A422NRC3_TRYRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.480e-9
Identity = 36/117 (30.77%), Postives = 64/117 (54.70%), Query Frame = 1
Query:    1 LLLIGFQALMSSFGGVYSEWLLKKDVSLSLHIKNSYLYAFSVVLNLSFYFALGATEDTPSGFFAGFSPIVALIIAVGSIAGISTALFLRYLDVILKEYAHSMEMFCTAVAVYFLFDE 351
            LL I  QA +SS  GVY+E   K++   S+H++N ++Y + ++ NL     +   +      F     I+  II +G+I G++ A  L++++VI+K +A S+E+  T V    +  E
Sbjct:  197 LLAIQLQAFLSSLAGVYNEVAFKREAGTSIHLQNFFMYLYGILFNLMLGLLVAPQKYLHESIFCNSHVILIPIILLGTINGLTAAFMLKFINVIVKAFAASVEVILTPVVAAAVLGE 313          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108412.1784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
L8H3D1_ACACA1.880e-2342.45Nucleotidesugar transporter n=1 Tax=Acanthamoeba c... [more]
A0A836IBQ1_9TRYP1.730e-1229.61Uncharacterized protein n=1 Tax=Porcisia hertigi T... [more]
UPI001F03FCB71.830e-1236.43UDP-galactose transporter senju-like n=1 Tax=Xenia... [more]
A0A564Z056_HYMDI3.660e-1129.20Uncharacterized protein n=1 Tax=Hymenolepis diminu... [more]
A0A7D9IC49_PARCT6.430e-1133.57CMP-sialic acid transporter 1-like n=2 Tax=Paramur... [more]
A0A833RID4_9POAL1.090e-1035.56CMP-sialic acid transporter 1-like isoform X1 n=1 ... [more]
A0A158QG27_HYMDI1.590e-1029.20Uncharacterized protein n=2 Tax=Hymenolepis diminu... [more]
W6L344_9TRYP1.800e-1029.32Uncharacterized protein n=1 Tax=Phytomonas sp. iso... [more]
A0A1V9ZWP5_9STRA3.980e-1030.30J domain-containing protein n=1 Tax=Thraustotheca ... [more]
A0A422NRC3_TRYRA1.480e-930.77Putative nucleotide sugar transporter n=1 Tax=Tryp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108412contigM-pyrifera_M_contig108412:1..411 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score71.6
Seed ortholog evalue2.9e-10
Seed eggNOG ortholog4558.Sb07g009540.1
KEGG koko:K15272,ko:K16290
KEGG TC2.A.7.12
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0008509,GO:0008514,GO:0012505,GO:0015075,GO:0015136,GO:0015318,GO:0015711,GO:0015739,GO:0015849,GO:0022857,GO:0031410,GO:0031982,GO:0031984,GO:0034220,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0097708,GO:0098656,GO:0098791,GO:1901264,GO:1901505,GO:1903825,GO:1905039
EggNOG free text desc.Nucleotide-sugar transporter
EggNOG OGs37TCE@33090,3GC1J@35493,3IMPF@38820,3KRTF@4447,COG0697@1,KOG2234@2759
COG Functional cat.G
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko02000
Exons1
Model size411
Cds size384
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815594.011854-UTR-M-pyrifera_M_contig108412:0..271622815594.011854-UTR-M-pyrifera_M_contig108412:0..27Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig108412 1..27 +
1692277479.1805441-UTR-M-pyrifera_M_contig108412:0..271692277479.1805441-UTR-M-pyrifera_M_contig108412:0..27Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig108412 1..27 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815594.0283642-CDS-M-pyrifera_M_contig108412:27..4111622815594.0283642-CDS-M-pyrifera_M_contig108412:27..411Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108412 28..411 +
1692277479.190984-CDS-M-pyrifera_M_contig108412:27..4111692277479.190984-CDS-M-pyrifera_M_contig108412:27..411Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108412 28..411 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108412.1784.1prot_M-pyrifera_M_contig108412.1784.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108412 28..411 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108412.1784.1

>prot_M-pyrifera_M_contig108412.1784.1 ID=prot_M-pyrifera_M_contig108412.1784.1|Name=mRNA_M-pyrifera_M_contig108412.1784.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=128bp
MSSFGGVYSEWLLKKDVSLSLHIKNSYLYAFSVVLNLSFYFALGATEDTP
SGFFAGFSPIVALIIAVGSIAGISTALFLRYLDVILKEYAHSMEMFCTAV
AVYFLFDEWRGARTLLSVGLACISVTLY
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mRNA from alignment at M-pyrifera_M_contig108412:1..411+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108412.1784.1 ID=mRNA_M-pyrifera_M_contig108412.1784.1|Name=mRNA_M-pyrifera_M_contig108412.1784.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=411bp|location=Sequence derived from alignment at M-pyrifera_M_contig108412:1..411+ (Macrocystis pyrifera P11B4 male)
CTCCTACTCATTGGCTTCCAGGCGCTCATGAGTAGCTTTGGAGGAGTCTA CTCTGAATGGCTGCTGAAGAAGGATGTGTCCCTCTCTCTGCACATCAAGA ACTCGTACTTGTACGCGTTTTCGGTGGTTCTCAACCTATCCTTCTACTTT GCCTTGGGCGCGACGGAGGACACCCCCTCAGGCTTCTTCGCAGGCTTCTC ACCCATTGTGGCCCTCATCATTGCTGTGGGCTCCATCGCTGGCATATCTA CGGCACTCTTCCTGCGATACCTCGACGTCATCTTGAAGGAGTACGCGCAC AGCATGGAGATGTTCTGCACTGCGGTGGCCGTCTACTTCCTCTTCGACGA GTGGAGAGGGGCGAGGACGCTCCTATCCGTGGGGCTTGCATGCATATCTG TGACCCTCTAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108412:1..411+

>mRNA_M-pyrifera_M_contig108412.1784.1 ID=mRNA_M-pyrifera_M_contig108412.1784.1|Name=mRNA_M-pyrifera_M_contig108412.1784.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig108412:1..411+ (Macrocystis pyrifera P11B4 male)
ATGAGTAGCTTTGGAGGAGTCTACTCTGAATGGCTGCTGAAGAAGGATGT
GTCCCTCTCTCTGCACATCAAGAACTCGTACTTGTACGCGTTTTCGGTGG
TTCTCAACCTATCCTTCTACTTTGCCTTGGGCGCGACGGAGGACACCCCC
TCAGGCTTCTTCGCAGGCTTCTCACCCATTGTGGCCCTCATCATTGCTGT
GGGCTCCATCGCTGGCATATCTACGGCACTCTTCCTGCGATACCTCGACG
TCATCTTGAAGGAGTACGCGCACAGCATGGAGATGTTCTGCACTGCGGTG
GCCGTCTACTTCCTCTTCGACGAGTGGAGAGGGGCGAGGACGCTCCTATC
CGTGGGGCTTGCATGCATATCTGTGACCCTCTACATGAGTAGCTTTGGAG
GAGTCTACTCTGAATGGCTGCTGAAGAAGGATGTGTCCCTCTCTCTGCAC
ATCAAGAACTCGTACTTGTACGCGTTTTCGGTGGTTCTCAACCTATCCTT
CTACTTTGCCTTGGGCGCGACGGAGGACACCCCCTCAGGCTTCTTCGCAG
GCTTCTCACCCATTGTGGCCCTCATCATTGCTGTGGGCTCCATCGCTGGC
ATATCTACGGCACTCTTCCTGCGATACCTCGACGTCATCTTGAAGGAGTA
CGCGCACAGCATGGAGATGTTCTGCACTGCGGTGGCCGTCTACTTCCTCT
TCGACGAGTGGAGAGGGGCGAGGACGCTCCTATCCGTGGGGCTTGCATGC
ATATCTGTGACCCTCTAC
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