mRNA_M-pyrifera_M_contig108403.1783.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108403.1783.1
Unique NamemRNA_M-pyrifera_M_contig108403.1783.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig108403.1783.1 vs. uniprot
Match: UPI001ADE0C39 (LOW QUALITY PROTEIN: multiple epidermal growth factor-like domains protein 8 n=1 Tax=Falco naumanni TaxID=148594 RepID=UPI001ADE0C39)

HSP 1 Score: 70.5 bits (171), Expect = 8.640e-12
Identity = 43/111 (38.74%), Postives = 64/111 (57.66%), Query Frame = 1
Query:    1 GFVYFGGTNGSVSFNDVFYWNLSSHPTHWRRGP-APLPAPRHLHAVMPTETGFLVHGGHLGAGVAFADDLWEFDFNTKIWAKVAYMGTTVPPPRAAHAAALIEDAFWIYGG 330
            GF  FGG + + +  D+  +N S++  HW R   +P PAPRH H  +      ++ GG L AG A A+D+W +D     W ++  +  T PP  AAHAAAL++D  +I+GG
Sbjct:  239 GFYIFGGLDLNRALGDLVVYNFSTN--HWARLELSPAPAPRHSHVAVCWRDMLVLSGGEL-AGGALANDVWLYDPVGGGWQELHPLNGTRPPGLAAHAAALVDDWLYIFGG 346          
BLAST of mRNA_M-pyrifera_M_contig108403.1783.1 vs. uniprot
Match: UPI0018867CC1 (LOW QUALITY PROTEIN: multiple epidermal growth factor-like domains protein 8 n=1 Tax=Falco rusticolus TaxID=120794 RepID=UPI0018867CC1)

HSP 1 Score: 70.5 bits (171), Expect = 8.760e-12
Identity = 43/111 (38.74%), Postives = 64/111 (57.66%), Query Frame = 1
Query:    1 GFVYFGGTNGSVSFNDVFYWNLSSHPTHWRRGP-APLPAPRHLHAVMPTETGFLVHGGHLGAGVAFADDLWEFDFNTKIWAKVAYMGTTVPPPRAAHAAALIEDAFWIYGG 330
            GF  FGG + + +  D+  +N S++  HW R   +P PAPRH H  +      ++ GG L AG A A+D+W +D     W ++  +  T PP  AAHAAAL++D  +I+GG
Sbjct:  239 GFYIFGGLDLNRALGDLVVYNFSTN--HWARLELSPAPAPRHSHVAVCWRDMLVLSGGEL-AGGALANDVWLYDPVGGGWQELHPLNGTRPPGLAAHAAALVDDWLYIFGG 346          
BLAST of mRNA_M-pyrifera_M_contig108403.1783.1 vs. uniprot
Match: UPI001CFA790D (multiple epidermal growth factor-like domains protein 8 n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFA790D)

HSP 1 Score: 64.7 bits (156), Expect = 9.260e-10
Identity = 36/107 (33.64%), Postives = 60/107 (56.07%), Query Frame = 1
Query:   13 FGGTNGSVSFNDVFYWNLSSHPTHWRRGP-APLPAPRHLHAVMPTETGFLVHGGHLGAGVAFADDLWEFDFNTKIWAKVAYMGTTVPPPRAAHAAALIEDAFWIYGG 330
            FGG + + +  D+  +N +++   W R   +P PAPRH H  +      +V+GG L  G + A+D+W ++     W ++A   +  PP  A+HAAAL+ D  +I+GG
Sbjct:   97 FGGFDLNTALGDLVLYNFTTNS--WERKVLSPSPAPRHSHVAVEWRGNLVVYGGELANG-SLANDVWLYNPLNNRWRELALSNSQSPPRLASHAAALVSDWMYIFGG 200          
BLAST of mRNA_M-pyrifera_M_contig108403.1783.1 vs. uniprot
Match: A0A371DEX2_9APHY (Galactose oxidase n=2 Tax=Polyporus TaxID=5637 RepID=A0A371DEX2_9APHY)

HSP 1 Score: 62.4 bits (150), Expect = 5.360e-9
Identity = 44/116 (37.93%), Postives = 59/116 (50.86%), Query Frame = 1
Query:   13 FGGTNGSVSFNDVFYWNLS---SHPTHWR-----RGPAPLPAPRHLHAVMPTETGFLVHGGHLGAGVAFADDLWEFDFNTKIWAKVAYMGTTVPPPRAAHAAALIEDAFWIYGGTG 336
            FGG      FNDV+ ++LS   S P  W      +G    P+ R  H  +P +   LV GG    G    +D W FD  TK W++V+  G  +P PR  HAAAL+ D  +I+GG G
Sbjct:  270 FGGEANGEYFNDVWCFDLSTLVSKPA-WEQIELPKGCVVKPSKRSGHTCVPWKEHLLVFGGT--DGKYHYNDTWAFDTATKTWSEVSSTGY-IPSPREGHAAALVGDVMYIFGGRG 381          
BLAST of mRNA_M-pyrifera_M_contig108403.1783.1 vs. uniprot
Match: A0A409VLF5_PSICY (Uncharacterized protein n=1 Tax=Psilocybe cyanescens TaxID=93625 RepID=A0A409VLF5_PSICY)

HSP 1 Score: 62.4 bits (150), Expect = 5.940e-9
Identity = 41/117 (35.04%), Postives = 63/117 (53.85%), Query Frame = 1
Query:    7 VYFGGTNGSVSFNDVFYWNLS---SHPT-HWRRGPAPL--PAPRHLHA-VMPTETGFLVHGGHLGAGVAFADDLWEFDFNTKIWAKVAYMGTTVPPPRAAHAAALIEDAFWIYGGTG 336
            + FGG + +  FND++ + L+   S P   WR  PA    PAPR  H  V   E   ++ GG    G  + +D W F+  T++W ++   G  +P PR +HAAA++ D  +I+GG G
Sbjct:  214 IMFGGQSNADFFNDLWAFELNTLKSKPAWDWRLEPATQERPAPRTSHVCVAYGEDQLIIFGGT--DGKFYYNDTWTFNLQTRVWTELRCSGY-IPAPRESHAAAIVNDIMYIFGGRG 327          
BLAST of mRNA_M-pyrifera_M_contig108403.1783.1 vs. uniprot
Match: UPI000462C332 (LOW QUALITY PROTEIN: multiple epidermal growth factor-like domains protein 8 n=1 Tax=Anolis carolinensis TaxID=28377 RepID=UPI000462C332)

HSP 1 Score: 62.0 bits (149), Expect = 8.170e-9
Identity = 34/109 (31.19%), Postives = 60/109 (55.05%), Query Frame = 1
Query:   13 FGGTNGSVSFNDVFYWNLSSHPTHWRRGPAPLPAPRHLHAVMPTETGFLVHGGHLGAGVAFADDLWEFDFNTKIWAKVAYMGTTVPPPR---AAHAAALIEDAFWIYGG 330
            FGG + + +  D+ ++N +++  H RR  +P P+ RH H+ +  E   ++ GG L +G   A D+W F      W ++     + PPP    A HAAA+++D  +++GG
Sbjct:  249 FGGLDLNTALGDLAFYNFTTNLWH-RRVLSPSPSARHSHSAVSWEGSLVLFGGELASG-RLASDVWAFSAREGRWREMRPSNASGPPPPGGLAGHAAAVVDDWLYVFGG 355          
BLAST of mRNA_M-pyrifera_M_contig108403.1783.1 vs. uniprot
Match: A0A8H6W9L5_9AGAR (Cell polarity protein n=1 Tax=Mycena indigotica TaxID=2126181 RepID=A0A8H6W9L5_9AGAR)

HSP 1 Score: 61.6 bits (148), Expect = 1.090e-8
Identity = 42/116 (36.21%), Postives = 59/116 (50.86%), Query Frame = 1
Query:    4 FVYFGGTNGSVSFNDVFYWNLSSHPTH--WRR---GPAPLPAPRHLHAVMPTETGFLVHGGHLGAGVAFADDLWEFDFNTKIWAKVAYMGTTVPPPRAAHAAALIEDAFWIYGGTG 336
            F  FGG       ND++ ++L+S  T   W       A  PA R  H  +  E   LV GG    G    +D W FD NT+ W+++  +G  +P PR  HAAAL++D  +I+GG G
Sbjct:  254 FFVFGGQVDGEFLNDLWSFDLNSLRTRATWELVEPASAEKPAQRTGHICVTYENRILVFGGT--DGQYHYNDTWAFDLNTRKWSELQCIGF-IPSPREGHAAALVDDVVYIFGGRG 366          
BLAST of mRNA_M-pyrifera_M_contig108403.1783.1 vs. uniprot
Match: A0A443S1V5_9ACAR (Leucine-zipper-like transcriptional regulator 1 (Fragment) n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443S1V5_9ACAR)

HSP 1 Score: 61.2 bits (147), Expect = 1.390e-8
Identity = 41/115 (35.65%), Postives = 55/115 (47.83%), Query Frame = 1
Query:   13 FGGTNGSVSFNDVF-------YWNLSSHPTHWRRGPAPLPAPRHLHAVMPTETGFLVHGGHLGAGVAFADDLWEFDFNTKIWAKVAYMGTT-VPPPRAAHAAALIEDAFWIYGGT 333
            F G +G+   ND+F       YW   S   H  RG  P P  R+ H ++  +    V GG   A     +DL  FD N+K W+ +     + VP  R  HAAA+I D  +IYGGT
Sbjct:  218 FSGQSGAKMTNDLFMFHFKTKYWTRISTTEHILRGAPPPPTRRYGHTMVAFDRHLYVFGG--AADSTLPNDLHAFDLNSKTWSVIQTAPESEVPSGRLFHAAAVIGDVMYIYGGT 330          
BLAST of mRNA_M-pyrifera_M_contig108403.1783.1 vs. uniprot
Match: A0A137QHP8_9AGAR (Tip elongation aberrant protein 1 n=1 Tax=Leucoagaricus sp. SymC.cos TaxID=1714833 RepID=A0A137QHP8_9AGAR)

HSP 1 Score: 61.2 bits (147), Expect = 1.490e-8
Identity = 36/116 (31.03%), Postives = 60/116 (51.72%), Query Frame = 1
Query:    4 FVYFGGTNGSVSFNDVFYWNLSSHPTH--WRR---GPAPLPAPRHLHAVMPTETGFLVHGGHLGAGVAFADDLWEFDFNTKIWAKVAYMGTTVPPPRAAHAAALIEDAFWIYGGTG 336
            F  FGG    +  ND++ ++L++  T   W      P   PAPR  H  +P +   ++ GG    G    +D+W FD   + W ++  +G  +P PR  HAAA+++D  +++GG G
Sbjct:  222 FFVFGGQVDGMFLNDLWAFDLNTLRTKAVWEVVECSPQDRPAPRTGHICVPYQDRLIIFGGT--DGQYHYNDIWSFDLKARRWTELQCIGH-IPSPREGHAAAIVDDVVYVFGGRG 334          
BLAST of mRNA_M-pyrifera_M_contig108403.1783.1 vs. uniprot
Match: A0A6A4HR54_9AGAR (Galactose oxidase n=1 Tax=Gymnopus androsaceus JB14 TaxID=1447944 RepID=A0A6A4HR54_9AGAR)

HSP 1 Score: 59.3 bits (142), Expect = 2.040e-8
Identity = 39/121 (32.23%), Postives = 59/121 (48.76%), Query Frame = 1
Query:    4 FVYFGGTNGSVSFNDVFYWNLSS----------HPTHWRRGPAPLPAPRHLHAVMPTETGFLVHGGHLGAGVAFADDLWEFDFNTKIWAKVAYMGTTVPPPRAAHAAALIEDAFWIYGGTG 336
            F+ FGG      FND++ ++L+S           PT   R     PA R  H  +      ++ GG    G    +D W FD  TK W+++  +G  +P PR  HAAAL++D  +++GG G
Sbjct:    7 FIVFGGQVDGQFFNDLWSFDLNSLRSRPQWELMEPTSPER-----PAQRMGHVCINHGDRIIIFGG--SNGQYHYNDTWSFDLTTKKWSELTCIGF-IPAPREGHAAALVDDVMYVFGGRG 119          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108403.1783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001ADE0C398.640e-1238.74LOW QUALITY PROTEIN: multiple epidermal growth fac... [more]
UPI0018867CC18.760e-1238.74LOW QUALITY PROTEIN: multiple epidermal growth fac... [more]
UPI001CFA790D9.260e-1033.64multiple epidermal growth factor-like domains prot... [more]
A0A371DEX2_9APHY5.360e-937.93Galactose oxidase n=2 Tax=Polyporus TaxID=5637 Rep... [more]
A0A409VLF5_PSICY5.940e-935.04Uncharacterized protein n=1 Tax=Psilocybe cyanesce... [more]
UPI000462C3328.170e-931.19LOW QUALITY PROTEIN: multiple epidermal growth fac... [more]
A0A8H6W9L5_9AGAR1.090e-836.21Cell polarity protein n=1 Tax=Mycena indigotica Ta... [more]
A0A443S1V5_9ACAR1.390e-835.65Leucine-zipper-like transcriptional regulator 1 (F... [more]
A0A137QHP8_9AGAR1.490e-831.03Tip elongation aberrant protein 1 n=1 Tax=Leucoaga... [more]
A0A6A4HR54_9AGAR2.040e-832.23Galactose oxidase n=1 Tax=Gymnopus androsaceus JB1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108403contigM-pyrifera_M_contig108403:172..574 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.0
Seed ortholog evalue2e-10
Seed eggNOG ortholog529818.AMSG_10909T0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.nitrile biosynthetic process
EggNOG OGsKOG0379@1,KOG0379@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size342
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815593.9588647-CDS-M-pyrifera_M_contig108403:171..2691622815593.9588647-CDS-M-pyrifera_M_contig108403:171..269Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108403 172..269 +
1692277479.1597455-CDS-M-pyrifera_M_contig108403:171..2691692277479.1597455-CDS-M-pyrifera_M_contig108403:171..269Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108403 172..269 +
1622815593.968905-CDS-M-pyrifera_M_contig108403:330..5741622815593.968905-CDS-M-pyrifera_M_contig108403:330..574Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108403 331..574 +
1692277479.1715896-CDS-M-pyrifera_M_contig108403:330..5741692277479.1715896-CDS-M-pyrifera_M_contig108403:330..574Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108403 331..574 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108403.1783.1prot_M-pyrifera_M_contig108403.1783.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108403 172..574 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108403.1783.1

>prot_M-pyrifera_M_contig108403.1783.1 ID=prot_M-pyrifera_M_contig108403.1783.1|Name=mRNA_M-pyrifera_M_contig108403.1783.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=114bp
GFVYFGGTNGSVSFNDVFYWNLSSHPTHWRRGPAPLPAPRHLHAVMPTET
GFLVHGGHLGAGVAFADDLWEFDFNTKIWAKVAYMGTTVPPPRAAHAAAL
IEDAFWIYGGTGAI
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mRNA from alignment at M-pyrifera_M_contig108403:172..574+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108403.1783.1 ID=mRNA_M-pyrifera_M_contig108403.1783.1|Name=mRNA_M-pyrifera_M_contig108403.1783.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=403bp|location=Sequence derived from alignment at M-pyrifera_M_contig108403:172..574+ (Macrocystis pyrifera P11B4 male)
GGCTTCGTCTACTTCGGAGGCACGAACGGCAGTGTCAGCTTCAACGACGT GTTCTACTGGAACTTGAGTTCGCATCCCACCCACTGGAGAAGAGGGCCGT TGCTGACGTAAATGCCCAGGCGACAACTCCGTTTCTAGCTGGACTGCCTC TGATCCGAGCGCCCCCTTGCCTGCCCCTCGCCACCTCCACGCTGTTATGC CAACAGAGACTGGCTTCCTGGTGCACGGGGGCCACCTTGGCGCTGGTGTT GCGTTTGCTGATGACCTGTGGGAGTTCGACTTCAACACCAAGATCTGGGC AAAGGTTGCGTACATGGGCACCACTGTGCCACCCCCTCGTGCCGCTCACG CCGCTGCCCTGATCGAAGACGCGTTTTGGATCTATGGGGGCACTGGGGCC ATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108403:172..574+

>mRNA_M-pyrifera_M_contig108403.1783.1 ID=mRNA_M-pyrifera_M_contig108403.1783.1|Name=mRNA_M-pyrifera_M_contig108403.1783.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig108403:172..574+ (Macrocystis pyrifera P11B4 male)
GGCTTCGTCTACTTCGGAGGCACGAACGGCAGTGTCAGCTTCAACGACGT
GTTCTACTGGAACTTGAGTTCGCATCCCACCCACTGGAGAAGAGGGCCGG
CTTCGTCTACTTCGGAGGCACGAACGGCAGTGTCAGCTTCAACGACGTGT
TCTACTGGAACTTGAGTTCGCATCCCACCCACTGGAGAAGAGGGCCCGCC
CCCTTGCCTGCCCCTCGCCACCTCCACGCTGTTATGCCAACAGAGACTGG
CTTCCTGGTGCACGGGGGCCACCTTGGCGCTGGTGTTGCGTTTGCTGATG
ACCTGTGGGAGTTCGACTTCAACACCAAGATCTGGGCAAAGGTTGCGTAC
ATGGGCACCACTGTGCCACCCCCTCGTGCCGCTCACGCCGCTGCCCTGAT
CGAAGACGCGTTTTGGATCTATGGGGGCACTGGGGCCATCCGCCCCCTTG
CCTGCCCCTCGCCACCTCCACGCTGTTATGCCAACAGAGACTGGCTTCCT
GGTGCACGGGGGCCACCTTGGCGCTGGTGTTGCGTTTGCTGATGACCTGT
GGGAGTTCGACTTCAACACCAAGATCTGGGCAAAGGTTGCGTACATGGGC
ACCACTGTGCCACCCCCTCGTGCCGCTCACGCCGCTGCCCTGATCGAAGA
CGCGTTTTGGATCTATGGGGGCACTGGGGCCATC
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