mRNA_M-pyrifera_M_contig108402.1782.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108402.1782.1
Unique NamemRNA_M-pyrifera_M_contig108402.1782.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig108402.1782.1 vs. uniprot
Match: A0A6A8Q9W9_9BACT (Uncharacterized protein n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A6A8Q9W9_9BACT)

HSP 1 Score: 95.1 bits (235), Expect = 2.740e-20
Identity = 50/133 (37.59%), Postives = 84/133 (63.16%), Query Frame = 1 
Query:    1 KKIIFLSSFVFFGNLLAGGLLINSWPFAVYPTFASIEKETVPSILIVALDNEQNRIQEIE-PFFDQSFRDVFVNTSKLRAHLNELLGNRNLTSTDFKTLKKIL----IESSIQNPSAIEKIEYYKIEIPLDPE 384
            +K  ++ +F+  G L++G LLINSWPFAVYPTFASIE +TVP++ I A++ +   ++    P  + +F D F +TS+LR ++ E++ ++N  S  F TL+KI     +  + Q   +I  I +Y+I +  +P+
Sbjct:  374 RKFTWVGTFLITGYLISGSLLINSWPFAVYPTFASIESDTVPTLYIEAINEKSGHVEASTIPLLNDTFTDQFSSTSRLRGYIREIINSQNQNSAYFGTLEKIFSKEYLSENNQTTDSI-NIHFYQIRLNTNPD 505
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BLAST of mRNA_M-pyrifera_M_contig108402.1782.1 vs. uniprot
Match: A0A2D9FW18_9BACT (Uncharacterized protein n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A2D9FW18_9BACT)

HSP 1 Score: 87.4 bits (215), Expect = 1.480e-17
Identity = 42/117 (35.90%), Postives = 70/117 (59.83%), Query Frame = 1 
Query:   37 GNLLAGGLLINSWPFAVYPTFASIEKETVPSILIVALDNEQNRIQEIEPFFDQSFRDVFVNT-SKLRAHLNELLGNRNLTSTDFKTLKKILIESSIQNPSAIEKIEYYKIEIPLDPE 384
            G L+ G LLI +WPFA+YPTFAS+E  T+PSILI   DNE   +    P  ++ F++ F ++ ++LR ++  ++ + N  ST ++ L    +    Q+P  I +I +Y+I +   P+
Sbjct:  408 GYLITGSLLIKTWPFALYPTFASLESSTIPSILIKGYDNEGTLVASTIPLLNEHFKEEFGSSGARLRGYMQNIINSSNRDSTKYQPLIAAFLSDFEQSPQDIAEITFYQIRLSTHPD 524
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BLAST of mRNA_M-pyrifera_M_contig108402.1782.1 vs. uniprot
Match: A0A846FDQ2_9CYAN (HTTM domain-containing protein n=1 Tax=Cyanothece sp. SIO1E1 TaxID=2607788 RepID=A0A846FDQ2_9CYAN)

HSP 1 Score: 71.2 bits (173), Expect = 6.890e-12
Identity = 44/128 (34.38%), Postives = 71/128 (55.47%), Query Frame = 1 
Query:    1 KKIIFLSSFVFFGNLLAGGLLINSWPFAVYPTFASIEKETVPSILIVALDNEQNRIQEIEPFFDQSFRDVFVNTSKLRAHLNELLGNRNLTSTDFKTLKKILIESSIQNPSAIEKIEYYKIEIPLDPE 384
            K +I + +F+   N++ GGLLIN+WP+AVYP FASI  +T+PSILI    +  +R + + P     F+    N  KL  +LN L     L+  D      +L+  S+   + + ++  YKI + +DP+
Sbjct:  394 KLLIGVGAFIILCNIIVGGLLINTWPYAVYPAFASIATDTIPSILIEKNYSNDDR-KVVIPLVSDHFKSELGN--KLFPYLNNLYYQDGLSEEDVN----VLVGHSLYEDN-LNEVRIYKIRLSIDPD 513
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108402.1782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6A8Q9W9_9BACT2.740e-2037.59Uncharacterized protein n=1 Tax=Balneolaceae bacte... [more]
A0A2D9FW18_9BACT1.480e-1735.90Uncharacterized protein n=1 Tax=Balneola sp. TaxID... [more]
A0A846FDQ2_9CYAN6.890e-1234.38HTTM domain-containing protein n=1 Tax=Cyanothece ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108402contigM-pyrifera_M_contig108402:225..608 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size384
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815593.9252214-CDS-M-pyrifera_M_contig108402:224..6081622815593.9252214-CDS-M-pyrifera_M_contig108402:224..608Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108402 225..608 -
1692277479.1503804-CDS-M-pyrifera_M_contig108402:224..6081692277479.1503804-CDS-M-pyrifera_M_contig108402:224..608Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108402 225..608 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108402.1782.1prot_M-pyrifera_M_contig108402.1782.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108402 225..608 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108402.1782.1

>prot_M-pyrifera_M_contig108402.1782.1 ID=prot_M-pyrifera_M_contig108402.1782.1|Name=mRNA_M-pyrifera_M_contig108402.1782.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=128bp
KKIIFLSSFVFFGNLLAGGLLINSWPFAVYPTFASIEKETVPSILIVALD
NEQNRIQEIEPFFDQSFRDVFVNTSKLRAHLNELLGNRNLTSTDFKTLKK
ILIESSIQNPSAIEKIEYYKIEIPLDPE
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mRNA from alignment at M-pyrifera_M_contig108402:225..608-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108402.1782.1 ID=mRNA_M-pyrifera_M_contig108402.1782.1|Name=mRNA_M-pyrifera_M_contig108402.1782.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig108402:225..608- (Macrocystis pyrifera P11B4 male)
AAAAAGATAATTTTTTTATCCAGTTTTGTTTTTTTTGGAAACCTTTTAGC
AGGAGGGTTATTGATAAATAGTTGGCCTTTTGCTGTTTATCCGACTTTTG
CTTCTATAGAAAAAGAGACTGTTCCTAGTATTCTCATTGTAGCATTAGAT
AACGAGCAGAATAGAATTCAAGAAATAGAACCTTTTTTTGATCAATCTTT
TCGAGATGTATTCGTTAATACCAGTAAATTACGAGCACATTTAAACGAAC
TTTTAGGCAATAGAAATCTCACTTCTACCGATTTCAAAACATTAAAAAAG
ATACTTATAGAGTCATCCATTCAAAACCCATCTGCAATCGAAAAGATTGA
ATATTATAAAATAGAAATCCCTCTTGATCCAGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108402:225..608-

>mRNA_M-pyrifera_M_contig108402.1782.1 ID=mRNA_M-pyrifera_M_contig108402.1782.1|Name=mRNA_M-pyrifera_M_contig108402.1782.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig108402:225..608- (Macrocystis pyrifera P11B4 male)
AAAAAGATAATTTTTTTATCCAGTTTTGTTTTTTTTGGAAACCTTTTAGC
AGGAGGGTTATTGATAAATAGTTGGCCTTTTGCTGTTTATCCGACTTTTG
CTTCTATAGAAAAAGAGACTGTTCCTAGTATTCTCATTGTAGCATTAGAT
AACGAGCAGAATAGAATTCAAGAAATAGAACCTTTTTTTGATCAATCTTT
TCGAGATGTATTCGTTAATACCAGTAAATTACGAGCACATTTAAACGAAC
TTTTAGGCAATAGAAATCTCACTTCTACCGATTTCAAAACATTAAAAAAG
ATACTTATAGAGTCATCCATTCAAAACCCATCTGCAATCGAAAAGATTGA
ATATTATAAAATAGAAATCCCTCTTGATCCAGAGAAAAAGATAATTTTTT
TATCCAGTTTTGTTTTTTTTGGAAACCTTTTAGCAGGAGGGTTATTGATA
AATAGTTGGCCTTTTGCTGTTTATCCGACTTTTGCTTCTATAGAAAAAGA
GACTGTTCCTAGTATTCTCATTGTAGCATTAGATAACGAGCAGAATAGAA
TTCAAGAAATAGAACCTTTTTTTGATCAATCTTTTCGAGATGTATTCGTT
AATACCAGTAAATTACGAGCACATTTAAACGAACTTTTAGGCAATAGAAA
TCTCACTTCTACCGATTTCAAAACATTAAAAAAGATACTTATAGAGTCAT
CCATTCAAAACCCATCTGCAATCGAAAAGATTGAATATTATAAAATAGAA
ATCCCTCTTGATCCAGAG
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