mRNA_M-pyrifera_M_contig108400.1781.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108400.1781.1
Unique NamemRNA_M-pyrifera_M_contig108400.1781.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig108400.1781.1 vs. uniprot
Match: A0A6N9YKB9_9ACTN (Peptidoglycan-binding protein n=1 Tax=Phytoactinopolyspora alkaliphila TaxID=1783498 RepID=A0A6N9YKB9_9ACTN)

HSP 1 Score: 67.8 bits (164), Expect = 4.980e-10
Identity = 53/180 (29.44%), Postives = 88/180 (48.89%), Query Frame = 1
Query:    1 GYTPNLPSFDAVSALEAAQDRVRGAQESLRIAEDAVANSGVGQSTIARTEAAAAVATAQNQYNLEPTAENAAALRTAEATEIVVNREQDLAIGNAAGQVEIARALRAEGLENDNAEGAGRQRDDAREELADAIDDLDRLDSQIGVIFPATELVFLPSLPREVQVLTIAPGRTVDGPVMAV 540
            GY P  P  +  +AL+AA D VR A++ +  AE  +A++  G     +  A       QN  +           + A A +         A+ +A  Q+++A+A + + L+  +  G     + AR+ LADA  D D   ++ G   PA+E+VF+PSLPR V  + +  G+  DG VM++
Sbjct:  160 GYEPPAPDPEIQAALDAADDAVRSAEDDVANAEAMLASASAGPGNAEKIAA-------QNDVD-----------QAARALQQAKEDGDRPAVADAEAQLKLAKANQEDLLKGPDTSGERAALNAARKRLADAQSDRDAAAAEAGTPLPASEVVFVPSLPRRVDAVNVKRGQEADGAVMSI 321          
BLAST of mRNA_M-pyrifera_M_contig108400.1781.1 vs. uniprot
Match: A0A511FGC2_9CELL (Uncharacterized protein n=3 Tax=Cellulomonas hominis TaxID=156981 RepID=A0A511FGC2_9CELL)

HSP 1 Score: 58.5 bits (140), Expect = 7.970e-7
Identity = 62/190 (32.63%), Postives = 95/190 (50.00%), Query Frame = 1
Query:    1 GYTPNLPSFDAVSALEAAQDRVRGAQESLRIAEDAVANSGVGQSTIARTEAAAAVATAQNQYNLEPTAENAAALRTAE----------ATEIVVNREQDLAIGNAAGQVEIARALRAEGLENDNAEGAGRQRDDAREELADAIDDLDRLDSQIGVIFPATELVFLPSLPREVQVLTIAPGRTVDGPVMAV 540
            GY+    S +A   L+ A+  VR AQ  +  ++ A++++       A    A ++A A         A +AAAL  A           A+E V  R  DLA  +A  QV +ARA+RA+  +  +   A      A++ LADA + L +    +  I PA+E+VFL +LPR V  +++  G TVDG VM+V
Sbjct:  198 GYSAPAASDEAAETLKMAERGVREAQAEVTRSQGALSSN-------AGAPGAGSIAEADATIRSRERARDAAALAVARLADTCAADQSASECVAARN-DLA--DAEDQVAVARAMRADLDKAPDTSDARAGVTAAQQALADAREALTQAQQDVLTILPASEVVFLETLPRRVDAVSVKRGGTVDGAVMSV 377          
BLAST of mRNA_M-pyrifera_M_contig108400.1781.1 vs. uniprot
Match: UPI001C2071FC (hypothetical protein n=1 Tax=Phytoactinopolyspora halotolerans TaxID=1981512 RepID=UPI001C2071FC)

HSP 1 Score: 57.8 bits (138), Expect = 1.470e-6
Identity = 53/180 (29.44%), Postives = 82/180 (45.56%), Query Frame = 1
Query:    1 GYTPNLPSFDAVSALEAAQDRVRGAQESLRIAEDAVANSGVGQSTIARTEAAAAVATAQNQYNLEPTAENAAALRTAEATEIVVNREQDLAIGNAAGQVEIARALRAEGLENDNAEGAGRQRDDAREELADAIDDLDRLDSQIGVIFPATELVFLPSLPREVQVLTIAPGRTVDGPVMAV 540
            GY P     D  +AL+AA + +  A++ +R AE A+  +  G S   + +A   V TA+ Q     T  +A A+  AE                   Q+++AR    E     +        D AR  L +A  + D+   + G   PA+E+VF+PSLPR V  + +  G  VDG VM++
Sbjct:  171 GYEPPAVDPDIQAALDAADENLDAAEDEVRNAESALQAASKGASEAEKLQAQHDVDTAERQLEQAKTDGDADAIADAEL------------------QLKLARTNLDEVEAGPDVSAERAALDAARSRLTEAQQERDQAAVRAGTPLPASEVVFVPSLPRRVDEVNVGRGDEVDGAVMSI 332          
BLAST of mRNA_M-pyrifera_M_contig108400.1781.1 vs. uniprot
Match: UPI00047DB056 (hypothetical protein n=1 Tax=Jiangella gansuensis TaxID=281473 RepID=UPI00047DB056)

HSP 1 Score: 55.8 bits (133), Expect = 6.470e-6
Identity = 57/180 (31.67%), Postives = 80/180 (44.44%), Query Frame = 1
Query:    1 GYTPNLPSFDAVSALEAAQDRVRGAQESLRIAEDAVANSGVGQSTIARTEAAAAVATAQNQYNLEPTAENAAALRTAEATEIVVNREQDLAIGNAAGQVEIARALRAEGLENDNAEGAGRQRDDAREELADAIDDLDRLDSQIGVIFPATELVFLPSLPREVQVLTIAPGRTVDGPVMAV 540
            GY P  P   A + LEAAQD V            A+  +G G +   R  A  AVA A+           AAA +  + T           I  A  QV +A A   + L+  +        D A+++LA A +D D   +  G   PA+E+VF+PSLPR V  + +  G  V+G VM+V
Sbjct:  172 GYEPPEPDPQAAAELEAAQDAVDXXXXXXXXXXXALDAAGAGPADAERVAAENAVAQAKRDL--------AAAKKQGDRT----------LIAQAEDQVRLAEAQLDDLLDGRDTSVEEAALDTAKDQLAAAREDRDTAAASAGTPLPASEVVFVPSLPRRVDEVHVRRGGQVNGAVMSV 333          
BLAST of mRNA_M-pyrifera_M_contig108400.1781.1 vs. uniprot
Match: UPI0018F1E405 (hypothetical protein n=1 Tax=Actinotalea solisilvae TaxID=2072922 RepID=UPI0018F1E405)

HSP 1 Score: 53.1 bits (126), Expect = 5.540e-5
Identity = 66/186 (35.48%), Postives = 92/186 (49.46%), Query Frame = 1
Query:    1 GYTPNLPSFDAVSALEAAQDRVRGAQESLRIAEDAVANSGVGQSTIARTEAAAAVATAQNQYNLEPTAENAAALRTAEATEIVVNREQDLAIG----NAAGQVEIARALRAEGLEN-DNAE------GAGRQRDDAREELADAIDDLDRLDSQIGVIFPATELVFLPSLPREVQVLTIAPGRTVDG 525
            GY       ++  A++AA+D VR A+E +  A+ A+  +  G S   R    A V +A   Y LE     AA    AEAT      +Q  A G     A G++++A A +AEGL   D AE       A R  DDARE+LA+A +D       +    PA+E+V+L SLPR V  + +  G TV G
Sbjct:  172 GYEAPTGGEESDLAVQAARDGVRSAEEQVGSAQRALTTARAGLSDKDRVALQAEVDSAT--YALE-----AARHECAEATG---TPDQARACGPSVVEADGRLKVAVAAQAEGLAAPDTAEEQAAVASAQRALDDAREQLAEAQED-------VLTPLPASEVVYLSSLPRRVDDVAVRRGSTVSG 340          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108400.1781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6N9YKB9_9ACTN4.980e-1029.44Peptidoglycan-binding protein n=1 Tax=Phytoactinop... [more]
A0A511FGC2_9CELL7.970e-732.63Uncharacterized protein n=3 Tax=Cellulomonas homin... [more]
UPI001C2071FC1.470e-629.44hypothetical protein n=1 Tax=Phytoactinopolyspora ... [more]
UPI00047DB0566.470e-631.67hypothetical protein n=1 Tax=Jiangella gansuensis ... [more]
UPI0018F1E4055.540e-535.48hypothetical protein n=1 Tax=Actinotalea solisilva... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108400contigM-pyrifera_M_contig108400:4..612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size540
Cds size540
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815593.8427415-CDS-M-pyrifera_M_contig108400:3..1251622815593.8427415-CDS-M-pyrifera_M_contig108400:3..125Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108400 4..125 +
1692277479.1333559-CDS-M-pyrifera_M_contig108400:3..1251692277479.1333559-CDS-M-pyrifera_M_contig108400:3..125Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108400 4..125 +
1622815593.8567903-CDS-M-pyrifera_M_contig108400:194..6121622815593.8567903-CDS-M-pyrifera_M_contig108400:194..612Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108400 195..612 +
1692277479.1419768-CDS-M-pyrifera_M_contig108400:194..6121692277479.1419768-CDS-M-pyrifera_M_contig108400:194..612Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108400 195..612 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108400.1781.1prot_M-pyrifera_M_contig108400.1781.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108400 4..612 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108400.1781.1

>prot_M-pyrifera_M_contig108400.1781.1 ID=prot_M-pyrifera_M_contig108400.1781.1|Name=mRNA_M-pyrifera_M_contig108400.1781.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=180bp
GYTPNLPSFDAVSALEAAQDRVRGAQESLRIAEDAVANSGVGQSTIARTE
AAAAVATAQNQYNLEPTAENAAALRTAEATEIVVNREQDLAIGNAAGQVE
IARALRAEGLENDNAEGAGRQRDDAREELADAIDDLDRLDSQIGVIFPAT
ELVFLPSLPREVQVLTIAPGRTVDGPVMAV
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mRNA from alignment at M-pyrifera_M_contig108400:4..612+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108400.1781.1 ID=mRNA_M-pyrifera_M_contig108400.1781.1|Name=mRNA_M-pyrifera_M_contig108400.1781.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=609bp|location=Sequence derived from alignment at M-pyrifera_M_contig108400:4..612+ (Macrocystis pyrifera P11B4 male)
GGCTACACGCCGAACCTTCCGTCGTTCGATGCCGTGTCCGCGCTCGAGGC GGCCCAGGACCGTGTTCGCGGCGCTCAGGAGAGTCTGCGGATCGCCGAAG ATGCGGTTGCGAACTCCGGGGTGTCGACCTCGACCAAGCTCCAACTCGAC CAGGCGGTCGCCAACGCCGAGCAGGCACTCGCCATCGTCAGCGGTCAGTC GACCATCGCCAGAACCGAAGCGGCCGCAGCGGTCGCCACGGCGCAGAACC AGTACAACCTCGAACCGACGGCGGAGAACGCCGCAGCGCTACGGACCGCC GAAGCGACCGAGATCGTCGTCAACCGCGAACAGGATCTCGCCATCGGCAA TGCCGCAGGCCAGGTCGAGATCGCTCGGGCGCTGCGCGCCGAAGGGCTCG AGAACGACAACGCCGAAGGCGCCGGACGCCAGCGAGACGATGCCCGTGAG GAACTCGCCGACGCCATCGACGACCTCGATCGGCTCGACAGCCAGATCGG TGTCATCTTCCCGGCGACCGAACTCGTCTTCCTGCCCTCGCTCCCCCGGG AGGTCCAGGTGCTGACCATCGCCCCGGGCCGGACCGTCGACGGTCCGGTC ATGGCCGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108400:4..612+

>mRNA_M-pyrifera_M_contig108400.1781.1 ID=mRNA_M-pyrifera_M_contig108400.1781.1|Name=mRNA_M-pyrifera_M_contig108400.1781.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1080bp|location=Sequence derived from alignment at M-pyrifera_M_contig108400:4..612+ (Macrocystis pyrifera P11B4 male)
GGCTACACGCCGAACCTTCCGTCGTTCGATGCCGTGTCCGCGCTCGAGGC
GGCCCAGGACCGTGTTCGCGGCGCTCAGGAGAGTCTGCGGATCGCCGAAG
ATGCGGTTGCGAACTCCGGGGTGGCTACACGCCGAACCTTCCGTCGTTCG
ATGCCGTGTCCGCGCTCGAGGCGGCCCAGGACCGTGTTCGCGGCGCTCAG
GAGAGTCTGCGGATCGCCGAAGATGCGGTTGCGAACTCCGGGGTCGGTCA
GTCGACCATCGCCAGAACCGAAGCGGCCGCAGCGGTCGCCACGGCGCAGA
ACCAGTACAACCTCGAACCGACGGCGGAGAACGCCGCAGCGCTACGGACC
GCCGAAGCGACCGAGATCGTCGTCAACCGCGAACAGGATCTCGCCATCGG
CAATGCCGCAGGCCAGGTCGAGATCGCTCGGGCGCTGCGCGCCGAAGGGC
TCGAGAACGACAACGCCGAAGGCGCCGGACGCCAGCGAGACGATGCCCGT
GAGGAACTCGCCGACGCCATCGACGACCTCGATCGGCTCGACAGCCAGAT
CGGTGTCATCTTCCCGGCGACCGAACTCGTCTTCCTGCCCTCGCTCCCCC
GGGAGGTCCAGGTGCTGACCATCGCCCCGGGCCGGACCGTCGACGGTCCG
GTCATGGCCGTGCGGTCAGTCGACCATCGCCAGAACCGAAGCGGCCGCAG
CGGTCGCCACGGCGCAGAACCAGTACAACCTCGAACCGACGGCGGAGAAC
GCCGCAGCGCTACGGACCGCCGAAGCGACCGAGATCGTCGTCAACCGCGA
ACAGGATCTCGCCATCGGCAATGCCGCAGGCCAGGTCGAGATCGCTCGGG
CGCTGCGCGCCGAAGGGCTCGAGAACGACAACGCCGAAGGCGCCGGACGC
CAGCGAGACGATGCCCGTGAGGAACTCGCCGACGCCATCGACGACCTCGA
TCGGCTCGACAGCCAGATCGGTGTCATCTTCCCGGCGACCGAACTCGTCT
TCCTGCCCTCGCTCCCCCGGGAGGTCCAGGTGCTGACCATCGCCCCGGGC
CGGACCGTCGACGGTCCGGTCATGGCCGTG
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