mRNA_M-pyrifera_M_contig108344.1775.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108344.1775.1
Unique NamemRNA_M-pyrifera_M_contig108344.1775.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig108344.1775.1 vs. uniprot
Match: A0A5A8E2Z4_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E2Z4_CAFRO)

HSP 1 Score: 182 bits (462), Expect = 3.200e-53
Identity = 83/153 (54.25%), Postives = 109/153 (71.24%), Query Frame = 1
Query:    1 PFATIDPFKATVAVPDSRFDWLVEQYHPKSKVPATLSVTDIAGLIQGASKGEGLGNDFLSHIQSVNGIYHVVRGFPSERIPHVMGGVDAVRDLEVIQRELILKDLGFIQSYLTKHRKTAAAGRGGRTFLLEFMAVEKCYRWLRYGDVDGGPKE 459
            PF TIDP  A V VPD RFDWLV+ + PKS+VPA LS TDIAGL++GA++G+GLGN FLSHI +V+GI+H+ RGFP E++ HV G VD VRDLE+I REL+LKD+  +++Y+ KH +      GG+T   EFM   K   W+ +G+  G   E
Sbjct:   29 PFCTIDPTDARVPVPDDRFDWLVDHFKPKSEVPAVLSTTDIAGLVKGAAEGKGLGNAFLSHIAAVDGIFHLCRGFPGEKVGHVEGSVDPVRDLEIIHRELLLKDIAALRAYIVKHARNVGRNLGGKTAKAEFMVCVKALNWVLHGEFTGSADE 181          
BLAST of mRNA_M-pyrifera_M_contig108344.1775.1 vs. uniprot
Match: A0A812JYP2_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812JYP2_9DINO)

HSP 1 Score: 182 bits (462), Expect = 1.470e-50
Identity = 83/153 (54.25%), Postives = 109/153 (71.24%), Query Frame = 1
Query:    1 PFATIDPFKATVAVPDSRFDWLVEQYHPKSKVPATLSVTDIAGLIQGASKGEGLGNDFLSHIQSVNGIYHVVRGFPSERIPHVMGGVDAVRDLEVIQRELILKDLGFIQSYLTKHRKTAAAGRGGRTFLLEFMAVEKCYRWLRYGDVDGGPKE 459
            PF TIDP  A V VPD RFDWLV+ + PKS+VPA LS TDIAGL++GA++G+GLGN FLSHI +V+GI+H+ RGFP E++ HV G VD VRDLE+I REL+LKD+  +++Y+ KH +      GG+T   EFM   K   W+ +G+  G   E
Sbjct:   29 PFCTIDPTDARVPVPDDRFDWLVDHFKPKSEVPAVLSTTDIAGLVKGAAEGKGLGNAFLSHIAAVDGIFHLCRGFPGEKVGHVEGSVDPVRDLEIIHRELLLKDIAALRAYIVKHARNVGRNLGGKTAKAEFMVCVKALNWVLHGEFTGSADE 181          
BLAST of mRNA_M-pyrifera_M_contig108344.1775.1 vs. uniprot
Match: A0A7S0JRS4_CAFRO (Hypothetical protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0JRS4_CAFRO)

HSP 1 Score: 164 bits (415), Expect = 4.420e-46
Identity = 73/138 (52.90%), Postives = 99/138 (71.74%), Query Frame = 1
Query:   46 DSRFDWLVEQYHPKSKVPATLSVTDIAGLIQGASKGEGLGNDFLSHIQSVNGIYHVVRGFPSERIPHVMGGVDAVRDLEVIQRELILKDLGFIQSYLTKHRKTAAAGRGGRTFLLEFMAVEKCYRWLRYGDVDGGPKE 459
            D RFDWLV+ + PKS+VPA LS TDIAGL++GA++G+GLGN FLSHI +V+GI+H+ RGFP E++ HV G VD VRDLE+I REL+LKD+  +++Y+ KH +      GG+T   EFM   K   W+ +G+  G   E
Sbjct:   61 DDRFDWLVDHFKPKSEVPAVLSTTDIAGLVKGAAEGKGLGNAFLSHIAAVDGIFHLCRGFPGEKVGHVEGSVDPVRDLEIIHRELLLKDIAALRAYIVKHARNVGRNLGGKTAKAEFMVCVKALNWVLHGEFTGSADE 198          
BLAST of mRNA_M-pyrifera_M_contig108344.1775.1 vs. uniprot
Match: W2MY09_PHYPR (Obg-like ATPase 1 n=7 Tax=Phytophthora parasitica TaxID=4792 RepID=W2MY09_PHYPR)

HSP 1 Score: 155 bits (392), Expect = 1.070e-42
Identity = 79/151 (52.32%), Postives = 102/151 (67.55%), Query Frame = 1
Query:    1 PFATIDPFKATVAVPDSRFDWLVEQYHPKSKVPATLSVTDIAGLIQGASKGEGLGNDFLSHIQSVNGIYHVVRGFPSERIPHVMGGVDAVRDLEVIQRELILKDLGFIQSYLTKHRKTAAAGRGGRTFLLEFMAVEKCYRWLRYG-DVDGG 450
            PF TIDP  A V +PD RF+WLVE+Y P S VP  +S+TDIAGL++GA++G GLGN FLSHIQ+V+ IYH+VR F S  + HV G VD VRD+++IQ EL LKD+  ++      +K A  G GG+   LE+ A+ K   WL  G DV  G
Sbjct:   53 PFCTIDPNDAVVPLPDQRFNWLVEKYQPASVVPPVISITDIAGLVRGAAEGAGLGNAFLSHIQAVDAIYHMVRAFDSTEVTHVEGNVDPVRDMKIIQEELRLKDIERVKKESVGVKKLAERGVGGKEKKLEYEALCKIQEWLESGKDVSFG 203          
BLAST of mRNA_M-pyrifera_M_contig108344.1775.1 vs. uniprot
Match: A0A067BWC1_SAPPC (Obg-like ATPase 1 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BWC1_SAPPC)

HSP 1 Score: 154 bits (389), Expect = 1.450e-42
Identity = 74/151 (49.01%), Postives = 104/151 (68.87%), Query Frame = 1
Query:    1 PFATIDPFKATVAVPDSRFDWLVEQYHPKSKVPATLSVTDIAGLIQGASKGEGLGNDFLSHIQSVNGIYHVVRGFPSERIPHVMGGVDAVRDLEVIQRELILKDLGFIQSYLTKHRKTAAAGRGGRTFLLEFMAVEKCYRWLRYG-DVDGG 450
            PF TI+P +A + VPD RF+WL  +Y P S+VP  + VTDIAGL++GA++G GLGN+FLSHIQ+V+ IYH+VRGF S+ + HV G VD VRD+++IQ+EL LKD+  +       +K    G GG+   +E+ A+ K   WL+ G D+  G
Sbjct:   51 PFCTIEPNQAIIPVPDQRFNWLCNKYKPASEVPPVIHVTDIAGLVKGAAEGAGLGNNFLSHIQAVDAIYHMVRGFDSKDVTHVEGNVDPVRDIQIIQQELRLKDIDRVSKQADGMKKNVERGIGGKEKKMEYEALVKALEWLQDGKDISFG 201          
BLAST of mRNA_M-pyrifera_M_contig108344.1775.1 vs. uniprot
Match: A0A8K1FJC3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FJC3_PYTOL)

HSP 1 Score: 159 bits (402), Expect = 2.860e-42
Identity = 78/151 (51.66%), Postives = 103/151 (68.21%), Query Frame = 1
Query:    1 PFATIDPFKATVAVPDSRFDWLVEQYHPKSKVPATLSVTDIAGLIQGASKGEGLGNDFLSHIQSVNGIYHVVRGFPSERIPHVMGGVDAVRDLEVIQRELILKDLGFIQSYLTKHRKTAAAGRGGRTFLLEFMAVEKCYRWLRYG-DVDGG 450
            PF TI+P +A V VPD RF W+VE+Y P S VP  +++TDIAGL++GAS+G GLGN FLSHIQ+V+ IYH+VRGF S  + HV G +D VRD+++IQ EL LKDL  ++  +   RK    G GG+   +EF A+ +   WL  G DV  G
Sbjct:  665 PFCTIEPNEAVVPVPDQRFQWMVEKYKPASVVPPVMAITDIAGLVKGASEGAGLGNAFLSHIQAVDAIYHMVRGFDSAEVTHVEGNIDPVRDIQIIQGELRLKDLDRVKKLVDAQRKNVERGIGGKEKKMEFEALVRVKEWLEAGKDVSFG 815          
BLAST of mRNA_M-pyrifera_M_contig108344.1775.1 vs. uniprot
Match: H3G8X2_PHYRM (Obg-like ATPase 1 n=21 Tax=Peronosporaceae TaxID=4777 RepID=H3G8X2_PHYRM)

HSP 1 Score: 153 bits (387), Expect = 3.000e-42
Identity = 77/156 (49.36%), Postives = 103/156 (66.03%), Query Frame = 1
Query:    1 PFATIDPFKATVAVPDSRFDWLVEQYHPKSKVPATLSVTDIAGLIQGASKGEGLGNDFLSHIQSVNGIYHVVRGFPSERIPHVMGGVDAVRDLEVIQRELILKDLGFIQSYLTKHRKTAAAGRGGRTFLLEFMAVEKCYRWLRYG-DVDGGPKEEP 465
            PF TIDP  A V +PD RF+WLV++Y P S VP  +S+TDIAGL++GA++G GLGN FLSHIQ+V+ IYH+VR F S  + HV G VD VRD+++IQ EL LKD+  ++      +K A  G GG+   +E+ ++ K   WL  G DV  G    P
Sbjct:   53 PFCTIDPNDAVVPLPDQRFNWLVDKYQPASVVPPVMSITDIAGLVRGAAEGAGLGNAFLSHIQAVDAIYHMVRAFDSTEVTHVEGNVDPVRDMQIIQEELRLKDIERVKKESQGVKKLAERGVGGKEKKVEYESLVKIQEWLESGKDVSFGTWSAP 208          
BLAST of mRNA_M-pyrifera_M_contig108344.1775.1 vs. uniprot
Match: A0A418AS85_9STRA (OBG-type G domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AS85_9STRA)

HSP 1 Score: 152 bits (385), Expect = 4.060e-42
Identity = 75/151 (49.67%), Postives = 101/151 (66.89%), Query Frame = 1
Query:    1 PFATIDPFKATVAVPDSRFDWLVEQYHPKSKVPATLSVTDIAGLIQGASKGEGLGNDFLSHIQSVNGIYHVVRGFPSERIPHVMGGVDAVRDLEVIQRELILKDLGFIQSYLTKHRKTAAAGRGGRTFLLEFMAVEKCYRWLRYG-DVDGG 450
            PF TI+P +A + VPD RF WL E+Y P S+VP  L++TDIAGL++GA++G GLGN FLSHIQ+V+ IYH+VR F S+ + HV G VD VRD+E+I  EL LKD+  +       RK    G GG+   +E+ A+ K   WL+ G D+  G
Sbjct:   52 PFCTIEPNQAMIPVPDQRFTWLCEKYKPASEVPPVLAITDIAGLVKGAAEGAGLGNAFLSHIQAVDAIYHMVRAFDSKDVTHVEGNVDPVRDMEIILHELRLKDIDRVSKQAEGMRKNVERGLGGKEKKMEYEALLKALEWLQSGKDISFG 202          
BLAST of mRNA_M-pyrifera_M_contig108344.1775.1 vs. uniprot
Match: A0A024UWN4_9STRA (Obg-like ATPase 1 n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024UWN4_9STRA)

HSP 1 Score: 152 bits (385), Expect = 5.690e-42
Identity = 75/151 (49.67%), Postives = 101/151 (66.89%), Query Frame = 1
Query:    1 PFATIDPFKATVAVPDSRFDWLVEQYHPKSKVPATLSVTDIAGLIQGASKGEGLGNDFLSHIQSVNGIYHVVRGFPSERIPHVMGGVDAVRDLEVIQRELILKDLGFIQSYLTKHRKTAAAGRGGRTFLLEFMAVEKCYRWLRYG-DVDGG 450
            PF TI+P +A + VPD RF WL E+Y P S+VP  L++TDIAGL++GA++G GLGN FLSHIQ+V+ IYH+VR F S+ + HV G VD VRD+E+I  EL LKD+  +       RK    G GG+   +E+ A+ K   WL+ G D+  G
Sbjct:   51 PFCTIEPNQAMIPVPDQRFTWLCEKYKPASEVPPVLAITDIAGLVKGAAEGAGLGNAFLSHIQAVDAIYHMVRAFDSKDVTHVEGNVDPVRDMEIILHELRLKDIDRVSKQAEGMRKNVERGLGGKEKKMEYEALLKALEWLQSGKDISFG 201          
BLAST of mRNA_M-pyrifera_M_contig108344.1775.1 vs. uniprot
Match: A0A5D6YE79_9STRA (Obg-like ATPase 1 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YE79_9STRA)

HSP 1 Score: 155 bits (391), Expect = 7.010e-42
Identity = 76/151 (50.33%), Postives = 101/151 (66.89%), Query Frame = 1
Query:    1 PFATIDPFKATVAVPDSRFDWLVEQYHPKSKVPATLSVTDIAGLIQGASKGEGLGNDFLSHIQSVNGIYHVVRGFPSERIPHVMGGVDAVRDLEVIQRELILKDLGFIQSYLTKHRKTAAAGRGGRTFLLEFMAVEKCYRWLRYG-DVDGG 450
            PF TI+P +A V +PD RF+WLVE   P S +P  +++TDIAGL++GA++G GLGN FLSHIQ+V+ IYH+VRGF S  + HV G VD VRD+++IQ EL LKDL  +   +   RK    G GG+   LEF A+ +   W+  G DV  G
Sbjct:  179 PFCTIEPNEAVVPLPDQRFNWLVEMVKPASVMPPVIAITDIAGLVKGAAEGAGLGNAFLSHIQAVDAIYHMVRGFDSTEVTHVEGNVDPVRDMKIIQEELRLKDLALVTKLIDSMRKNVERGLGGKEKKLEFEALIRIKEWMESGKDVSFG 329          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108344.1775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8E2Z4_CAFRO3.200e-5354.25Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A812JYP2_9DINO1.470e-5054.25Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A7S0JRS4_CAFRO4.420e-4652.90Hypothetical protein n=1 Tax=Cafeteria roenbergens... [more]
W2MY09_PHYPR1.070e-4252.32Obg-like ATPase 1 n=7 Tax=Phytophthora parasitica ... [more]
A0A067BWC1_SAPPC1.450e-4249.01Obg-like ATPase 1 n=4 Tax=Saprolegniaceae TaxID=47... [more]
A0A8K1FJC3_PYTOL2.860e-4251.66Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
H3G8X2_PHYRM3.000e-4249.36Obg-like ATPase 1 n=21 Tax=Peronosporaceae TaxID=4... [more]
A0A418AS85_9STRA4.060e-4249.67OBG-type G domain-containing protein n=1 Tax=Aphan... [more]
A0A024UWN4_9STRA5.690e-4249.67Obg-like ATPase 1 n=4 Tax=Aphanomyces TaxID=100860... [more]
A0A5D6YE79_9STRA7.010e-4250.33Obg-like ATPase 1 n=1 Tax=Pythium brassicum TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108344contigM-pyrifera_M_contig108344:96..560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.8
Seed ortholog evalue8.4e-36
Seed eggNOG ortholog65071.PYU1_T000771
KEGG koko:K19788
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GTPase. Source PGD
EggNOG OGs1MCTT@121069,COG0012@1,KOG1491@2759
COG Functional cat.J
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons1
Model size465
Cds size465
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815593.263084-CDS-M-pyrifera_M_contig108344:95..5601622815593.263084-CDS-M-pyrifera_M_contig108344:95..560Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108344 96..560 -
1692277478.735803-CDS-M-pyrifera_M_contig108344:95..5601692277478.735803-CDS-M-pyrifera_M_contig108344:95..560Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108344 96..560 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108344.1775.1prot_M-pyrifera_M_contig108344.1775.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108344 96..560 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108344.1775.1

>prot_M-pyrifera_M_contig108344.1775.1 ID=prot_M-pyrifera_M_contig108344.1775.1|Name=mRNA_M-pyrifera_M_contig108344.1775.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=155bp
PFATIDPFKATVAVPDSRFDWLVEQYHPKSKVPATLSVTDIAGLIQGASK
GEGLGNDFLSHIQSVNGIYHVVRGFPSERIPHVMGGVDAVRDLEVIQREL
ILKDLGFIQSYLTKHRKTAAAGRGGRTFLLEFMAVEKCYRWLRYGDVDGG
PKEEP
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mRNA from alignment at M-pyrifera_M_contig108344:96..560-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108344.1775.1 ID=mRNA_M-pyrifera_M_contig108344.1775.1|Name=mRNA_M-pyrifera_M_contig108344.1775.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=465bp|location=Sequence derived from alignment at M-pyrifera_M_contig108344:96..560- (Macrocystis pyrifera P11B4 male)
CCTTTCGCCACGATTGACCCGTTCAAGGCGACTGTTGCGGTTCCCGACAG CCGTTTCGACTGGCTGGTGGAGCAGTACCACCCGAAGAGCAAGGTTCCGG CGACGTTGAGTGTGACTGACATTGCGGGTTTGATCCAGGGCGCGAGCAAA GGGGAGGGTCTTGGGAACGACTTTTTGTCGCACATCCAGAGCGTGAACGG AATCTATCACGTGGTGCGAGGGTTTCCTTCGGAGCGAATTCCACACGTGA TGGGGGGTGTGGATGCGGTGCGTGACTTGGAGGTGATCCAGCGCGAGCTC ATTCTCAAGGACCTGGGCTTTATCCAGTCCTACCTCACCAAGCACCGAAA GACTGCAGCTGCAGGGAGAGGGGGGAGGACGTTCTTGCTCGAGTTTATGG CTGTGGAGAAATGCTACCGTTGGTTGCGCTATGGCGATGTGGACGGTGGG CCGAAGGAAGAGCCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108344:96..560-

>mRNA_M-pyrifera_M_contig108344.1775.1 ID=mRNA_M-pyrifera_M_contig108344.1775.1|Name=mRNA_M-pyrifera_M_contig108344.1775.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=930bp|location=Sequence derived from alignment at M-pyrifera_M_contig108344:96..560- (Macrocystis pyrifera P11B4 male)
CCTTTCGCCACGATTGACCCGTTCAAGGCGACTGTTGCGGTTCCCGACAG
CCGTTTCGACTGGCTGGTGGAGCAGTACCACCCGAAGAGCAAGGTTCCGG
CGACGTTGAGTGTGACTGACATTGCGGGTTTGATCCAGGGCGCGAGCAAA
GGGGAGGGTCTTGGGAACGACTTTTTGTCGCACATCCAGAGCGTGAACGG
AATCTATCACGTGGTGCGAGGGTTTCCTTCGGAGCGAATTCCACACGTGA
TGGGGGGTGTGGATGCGGTGCGTGACTTGGAGGTGATCCAGCGCGAGCTC
ATTCTCAAGGACCTGGGCTTTATCCAGTCCTACCTCACCAAGCACCGAAA
GACTGCAGCTGCAGGGAGAGGGGGGAGGACGTTCTTGCTCGAGTTTATGG
CTGTGGAGAAATGCTACCGTTGGTTGCGCTATGGCGATGTGGACGGTGGG
CCGAAGGAAGAGCCACCTTTCGCCACGATTGACCCGTTCAAGGCGACTGT
TGCGGTTCCCGACAGCCGTTTCGACTGGCTGGTGGAGCAGTACCACCCGA
AGAGCAAGGTTCCGGCGACGTTGAGTGTGACTGACATTGCGGGTTTGATC
CAGGGCGCGAGCAAAGGGGAGGGTCTTGGGAACGACTTTTTGTCGCACAT
CCAGAGCGTGAACGGAATCTATCACGTGGTGCGAGGGTTTCCTTCGGAGC
GAATTCCACACGTGATGGGGGGTGTGGATGCGGTGCGTGACTTGGAGGTG
ATCCAGCGCGAGCTCATTCTCAAGGACCTGGGCTTTATCCAGTCCTACCT
CACCAAGCACCGAAAGACTGCAGCTGCAGGGAGAGGGGGGAGGACGTTCT
TGCTCGAGTTTATGGCTGTGGAGAAATGCTACCGTTGGTTGCGCTATGGC
GATGTGGACGGTGGGCCGAAGGAAGAGCCA
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