mRNA_M-pyrifera_M_contig108327.1773.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108327.1773.1
Unique NamemRNA_M-pyrifera_M_contig108327.1773.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig108327.1773.1 vs. uniprot
Match: A0A6J6Y388_9ZZZZ (Unannotated protein n=1 Tax=freshwater metagenome TaxID=449393 RepID=A0A6J6Y388_9ZZZZ)

HSP 1 Score: 155 bits (392), Expect = 4.560e-46
Identity = 78/104 (75.00%), Postives = 87/104 (83.65%), Query Frame = 1 
Query:    1 YIPPVYEKWGGQDLLDGKRIVRPRESLEWTRRLTE-IGVFAGISAGAALAGAVRTAEKIGDADPEAEATIVFIVCDGGWKYLSTGAWTDDLDEVTERAKKIIYF 309
            YIPPVYEKWGG +LLDGKRIVRPRES+E+TR L E  G+F+GISAGAALAGAVR A +I         TIVFIVCDGGWKYLSTGAWTDD+D+VT+RA KIIYF
Sbjct:   94 YIPPVYEKWGGPELLDGKRIVRPRESIEYTRLLAEKCGIFSGISAGAALAGAVRVASQI------ESGTIVFIVCDGGWKYLSTGAWTDDIDDVTDRASKIIYF 191
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BLAST of mRNA_M-pyrifera_M_contig108327.1773.1 vs. uniprot
Match: A0A349BBM0_9ACTN (Cysteine synthase B n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349BBM0_9ACTN)

HSP 1 Score: 157 bits (398), Expect = 1.720e-45
Identity = 76/103 (73.79%), Postives = 88/103 (85.44%), Query Frame = 1 
Query:    1 YIPPVYEKWGGQDLLDGKRIVRPRESLEWTRRLTEIGVFAGISAGAALAGAVRTAEKIGDADPEAEATIVFIVCDGGWKYLSTGAWTDDLDEVTERAKKIIYF 309
            YIPPV+EKWGG +LLD KRIVRPRES+EWTRRL+EIG+F+GISAGAALAGAV+ A +I         TIVF+VCD GWKY+STGAWTDDLDEV ERA++IIYF
Sbjct:  219 YIPPVFEKWGGAELLDRKRIVRPRESIEWTRRLSEIGIFSGISAGAALAGAVKVAGEI------ESGTIVFVVCDYGWKYISTGAWTDDLDEVVERAERIIYF 315
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BLAST of mRNA_M-pyrifera_M_contig108327.1773.1 vs. uniprot
Match: A0A6I2YEA6_9ACTN (Pyridoxal-phosphate dependent enzyme n=3 Tax=root TaxID=1 RepID=A0A6I2YEA6_9ACTN)

HSP 1 Score: 157 bits (397), Expect = 2.480e-45
Identity = 79/104 (75.96%), Postives = 86/104 (82.69%), Query Frame = 1 
Query:    1 YIPPVYEKWGGQDLLDGKRIVRPRESLEWTRRL-TEIGVFAGISAGAALAGAVRTAEKIGDADPEAEATIVFIVCDGGWKYLSTGAWTDDLDEVTERAKKIIYF 309
            YIPPV+E WGG +LLDGKRIVRPRESLEWTRRL  E G+FAGISAGAALAGA R AE+I       E  IVF+VCDGGWKYLSTGAWTDDLD V +RA+KIIYF
Sbjct:  219 YIPPVFENWGGLELLDGKRIVRPRESLEWTRRLLAECGIFAGISAGAALAGAARVAERID------EGVIVFVVCDGGWKYLSTGAWTDDLDVVVKRAEKIIYF 316
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BLAST of mRNA_M-pyrifera_M_contig108327.1773.1 vs. uniprot
Match: A0A6L6A321_9ACTN (Cysteine synthase n=14 Tax=root TaxID=1 RepID=A0A6L6A321_9ACTN)

HSP 1 Score: 155 bits (392), Expect = 1.400e-44
Identity = 78/104 (75.00%), Postives = 87/104 (83.65%), Query Frame = 1 
Query:    1 YIPPVYEKWGGQDLLDGKRIVRPRESLEWTRRLTE-IGVFAGISAGAALAGAVRTAEKIGDADPEAEATIVFIVCDGGWKYLSTGAWTDDLDEVTERAKKIIYF 309
            YIPPVYEKWGG +LLDGKRIVRPRES+E+TR L E  G+F+GISAGAALAGAVR A +I         TIVFIVCDGGWKYLSTGAWTDD+D+VT+RA KIIYF
Sbjct:  219 YIPPVYEKWGGPELLDGKRIVRPRESIEYTRLLAEKCGIFSGISAGAALAGAVRVASQI------ESGTIVFIVCDGGWKYLSTGAWTDDIDDVTDRASKIIYF 316
[Close]
BLAST of mRNA_M-pyrifera_M_contig108327.1773.1 vs. uniprot
Match: UPI001AA087B4 (cysteine synthase n=1 Tax=Rhabdothermincola sediminis TaxID=2751370 RepID=UPI001AA087B4)

HSP 1 Score: 155 bits (391), Expect = 1.970e-44
Identity = 78/104 (75.00%), Postives = 88/104 (84.62%), Query Frame = 1 
Query:    1 YIPPVYEKWGGQDLLDGKRIVRPRESLEWTRRL-TEIGVFAGISAGAALAGAVRTAEKIGDADPEAEATIVFIVCDGGWKYLSTGAWTDDLDEVTERAKKIIYF 309
            YIPPVYEKWGG +LLDGKRIVRP ES+EWTRRL TE GVFAGIS+GAALAGA++ AE++       + TIVFIV DGGWKYLSTGA+TDDLDEV E+A KIIYF
Sbjct:  219 YIPPVYEKWGGPELLDGKRIVRPLESIEWTRRLVTECGVFAGISSGAALAGAIKVAERLD------QGTIVFIVADGGWKYLSTGAYTDDLDEVAEKASKIIYF 316
[Close]
BLAST of mRNA_M-pyrifera_M_contig108327.1773.1 vs. uniprot
Match: A0A5Q2RG11_9ACTN (Pyridoxal-phosphate dependent enzyme n=1 Tax=Actinomarinicola tropica TaxID=2789776 RepID=A0A5Q2RG11_9ACTN)

HSP 1 Score: 154 bits (390), Expect = 2.720e-44
Identity = 74/103 (71.84%), Postives = 85/103 (82.52%), Query Frame = 1 
Query:    1 YIPPVYEKWGGQDLLDGKRIVRPRESLEWTRRLTEIGVFAGISAGAALAGAVRTAEKIGDADPEAEATIVFIVCDGGWKYLSTGAWTDDLDEVTERAKKIIYF 309
            YIPP+Y+KWGG +LLDGKRIVRP+ES+EW RRL EIG+FAGISAGAALAGA + AEKI D        IV IV DGGWKY+STGAWTD +DEV ERA++IIYF
Sbjct:  219 YIPPIYDKWGGAELLDGKRIVRPKESIEWLRRLGEIGIFAGISAGAALAGAAKVAEKIDDG------VIVVIVADGGWKYMSTGAWTDPIDEVVERAERIIYF 315
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BLAST of mRNA_M-pyrifera_M_contig108327.1773.1 vs. uniprot
Match: UPI001C6329EC (cysteine synthase family protein n=1 Tax=Iamia sp. SCSIO 61187 TaxID=2722752 RepID=UPI001C6329EC)

HSP 1 Score: 154 bits (390), Expect = 2.790e-44
Identity = 79/104 (75.96%), Postives = 86/104 (82.69%), Query Frame = 1 
Query:    1 YIPPVYEKWGGQDLLDGKRIVRPRESLEWTRRLT-EIGVFAGISAGAALAGAVRTAEKIGDADPEAEATIVFIVCDGGWKYLSTGAWTDDLDEVTERAKKIIYF 309
            YIPPV+EKWGG DLLDGKRIVRPRESLEWTRRL  E G+FAGIS+GAALAGAV+ AEKI       E TIVFIVCDGGWKYLSTGA+TDDLD    +A+ IIYF
Sbjct:  219 YIPPVFEKWGGLDLLDGKRIVRPRESLEWTRRLVAEAGIFAGISSGAALAGAVKVAEKID------EGTIVFIVCDGGWKYLSTGAYTDDLDAAEAKAESIIYF 316
[Close]
BLAST of mRNA_M-pyrifera_M_contig108327.1773.1 vs. uniprot
Match: A0A7K1ZDI8_9ACTN (Cysteine synthase family protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1ZDI8_9ACTN)

HSP 1 Score: 154 bits (389), Expect = 3.840e-44
Identity = 75/103 (72.82%), Postives = 84/103 (81.55%), Query Frame = 1 
Query:    1 YIPPVYEKWGGQDLLDGKRIVRPRESLEWTRRLTEIGVFAGISAGAALAGAVRTAEKIGDADPEAEATIVFIVCDGGWKYLSTGAWTDDLDEVTERAKKIIYF 309
            YIPPV+E+WGG +LLDGKRIVRPRESLEWTRRL ++GVFAG+S GAA+AGAVRTA+KI         TIV I  DGGWKYLS GAWTDDLDEV E+AK  IYF
Sbjct:  219 YIPPVFERWGGLELLDGKRIVRPRESLEWTRRLADLGVFAGVSTGAAMAGAVRTADKID------RGTIVTIAADGGWKYLSLGAWTDDLDEVVEKAKHTIYF 315
[Close]
BLAST of mRNA_M-pyrifera_M_contig108327.1773.1 vs. uniprot
Match: UPI001E3680E8 (PLP-dependent cysteine synthase family protein n=1 Tax=Rhabdothermincola sp. EGI L10124 TaxID=2903142 RepID=UPI001E3680E8)

HSP 1 Score: 153 bits (387), Expect = 7.850e-44
Identity = 78/104 (75.00%), Postives = 86/104 (82.69%), Query Frame = 1 
Query:    1 YIPPVYEKWGGQDLLDGKRIVRPRESLEWTRRLTE-IGVFAGISAGAALAGAVRTAEKIGDADPEAEATIVFIVCDGGWKYLSTGAWTDDLDEVTERAKKIIYF 309
            YIPPVYEKWGG +LLD KRIVRP+ES+ +TRRL E  G+F+GISAGAALAGA + AE I       E TIVFIVCDGGWKYLSTGAWTDD+DEV ERAKKIIYF
Sbjct:  219 YIPPVYEKWGGPELLDRKRIVRPKESIVYTRRLAEECGIFSGISAGAALAGACKVAEAID------EGTIVFIVCDGGWKYLSTGAWTDDIDEVVERAKKIIYF 316
[Close]
BLAST of mRNA_M-pyrifera_M_contig108327.1773.1 vs. uniprot
Match: A0A2E5ZJF8_9ACTN (Cysteine synthase B n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E5ZJF8_9ACTN)

HSP 1 Score: 151 bits (382), Expect = 4.970e-43
Identity = 75/104 (72.12%), Postives = 86/104 (82.69%), Query Frame = 1 
Query:    1 YIPPVYEKWGGQDLLDGKRIVRPRESLEWTRRLT-EIGVFAGISAGAALAGAVRTAEKIGDADPEAEATIVFIVCDGGWKYLSTGAWTDDLDEVTERAKKIIYF 309
            Y+PPV+E WGG DLLDGKRIVRPRES+E+ RRL  E G+FAG+SAGAALAGAVR AEK+ D D + EATIVF+VCDGGWKYLSTGAWT DLDEV    + +I F
Sbjct:  219 YVPPVFENWGGYDLLDGKRIVRPRESIEYARRLADECGIFAGLSAGAALAGAVRVAEKL-DVDLDGEATIVFVVCDGGWKYLSTGAWTADLDEVAADVEGLIVF 321
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108327.1773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6J6Y388_9ZZZZ4.560e-4675.00Unannotated protein n=1 Tax=freshwater metagenome ... [more]
A0A349BBM0_9ACTN1.720e-4573.79Cysteine synthase B n=1 Tax=Acidimicrobiaceae bact... [more]
A0A6I2YEA6_9ACTN2.480e-4575.96Pyridoxal-phosphate dependent enzyme n=3 Tax=root ... [more]
A0A6L6A321_9ACTN1.400e-4475.00Cysteine synthase n=14 Tax=root TaxID=1 RepID=A0A6... [more]
UPI001AA087B41.970e-4475.00cysteine synthase n=1 Tax=Rhabdothermincola sedimi... [more]
A0A5Q2RG11_9ACTN2.720e-4471.84Pyridoxal-phosphate dependent enzyme n=1 Tax=Actin... [more]
UPI001C6329EC2.790e-4475.96cysteine synthase family protein n=1 Tax=Iamia sp.... [more]
A0A7K1ZDI8_9ACTN3.840e-4472.82Cysteine synthase family protein n=2 Tax=Acidimicr... [more]
UPI001E3680E87.850e-4475.00PLP-dependent cysteine synthase family protein n=1... [more]
A0A2E5ZJF8_9ACTN4.970e-4372.12Cysteine synthase B n=1 Tax=Acidimicrobiaceae bact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108327contigM-pyrifera_M_contig108327:3..314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score140.6
Seed ortholog evalue4.2e-31
Seed eggNOG ortholog1313172.YM304_27740
Preferred namecysM
KEGG rclassRC00020,RC00055,RC00523,RC02814,RC02821,RC02876,RC03225
KEGG koko:K01883,ko:K12339,ko:K21148
KEGG ReactionR00897,R03132,R03601,R03650,R04859,R10610
KEGG Pathwayko00270,ko00920,ko00970,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04122,map00270,map00920,map00970,map01100,map01110,map01120,map01130,map01200,map01230,map04122
KEGG ModuleM00021,M00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004124,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006563,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0016829,GO:0016846,GO:0019344,GO:0019752,GO:0019842,GO:0030170,GO:0032991,GO:0033847,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0080146,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.Pyridoxal-phosphate dependent enzyme
EggNOG OGs2GIXE@201174,4CMZT@84992,COG0031@1,COG0031@2
EC2.5.1.113,2.5.1.47,6.1.1.16
COG Functional cat.E
Best tax levelAcidimicrobiia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Exons1
Model size312
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815593.183579-CDS-M-pyrifera_M_contig108327:2..3141622815593.183579-CDS-M-pyrifera_M_contig108327:2..314Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108327 3..314 +
1692277478.6938827-CDS-M-pyrifera_M_contig108327:2..3141692277478.6938827-CDS-M-pyrifera_M_contig108327:2..314Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108327 3..314 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108327.1773.1prot_M-pyrifera_M_contig108327.1773.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108327 3..314 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108327.1773.1

>prot_M-pyrifera_M_contig108327.1773.1 ID=prot_M-pyrifera_M_contig108327.1773.1|Name=mRNA_M-pyrifera_M_contig108327.1773.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
YIPPVYEKWGGQDLLDGKRIVRPRESLEWTRRLTEIGVFAGISAGAALAG
AVRTAEKIGDADPEAEATIVFIVCDGGWKYLSTGAWTDDLDEVTERAKKI
IYF*
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mRNA from alignment at M-pyrifera_M_contig108327:3..314+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108327.1773.1 ID=mRNA_M-pyrifera_M_contig108327.1773.1|Name=mRNA_M-pyrifera_M_contig108327.1773.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig108327:3..314+ (Macrocystis pyrifera P11B4 male)
TACATCCCGCCGGTCTACGAGAAGTGGGGTGGGCAGGACCTGCTCGACGG
CAAGCGCATCGTGCGGCCACGAGAGTCGCTCGAATGGACACGCAGGCTGA
CCGAGATCGGTGTGTTCGCCGGGATCTCGGCCGGTGCGGCGCTCGCCGGC
GCGGTGCGCACGGCGGAGAAGATCGGCGATGCCGACCCGGAGGCCGAAGC
CACGATCGTGTTCATCGTGTGTGACGGCGGGTGGAAGTACCTCTCCACCG
GCGCGTGGACCGACGATCTCGACGAGGTCACCGAGCGGGCCAAGAAGATC
ATCTACTTCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108327:3..314+

>mRNA_M-pyrifera_M_contig108327.1773.1 ID=mRNA_M-pyrifera_M_contig108327.1773.1|Name=mRNA_M-pyrifera_M_contig108327.1773.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig108327:3..314+ (Macrocystis pyrifera P11B4 male)
TACATCCCGCCGGTCTACGAGAAGTGGGGTGGGCAGGACCTGCTCGACGG
CAAGCGCATCGTGCGGCCACGAGAGTCGCTCGAATGGACACGCAGGCTGA
CCGAGATCGGTGTGTTCGCCGGGATCTCGGCCGGTGCGGCGCTCGCCGGC
GCGGTGCGCACGGCGGAGAAGATCGGCGATGCCGACCCGGAGGCCGAAGC
CACGATCGTGTTCATCGTGTGTGACGGCGGGTGGAAGTACCTCTCCACCG
GCGCGTGGACCGACGATCTCGACGAGGTCACCGAGCGGGCCAAGAAGATC
ATCTACTTCTAGTACATCCCGCCGGTCTACGAGAAGTGGGGTGGGCAGGA
CCTGCTCGACGGCAAGCGCATCGTGCGGCCACGAGAGTCGCTCGAATGGA
CACGCAGGCTGACCGAGATCGGTGTGTTCGCCGGGATCTCGGCCGGTGCG
GCGCTCGCCGGCGCGGTGCGCACGGCGGAGAAGATCGGCGATGCCGACCC
GGAGGCCGAAGCCACGATCGTGTTCATCGTGTGTGACGGCGGGTGGAAGT
ACCTCTCCACCGGCGCGTGGACCGACGATCTCGACGAGGTCACCGAGCGG
GCCAAGAAGATCATCTACTTCTAG
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