mRNA_M-pyrifera_M_contig108323.1772.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig108323.1772.1 vs. uniprot
Match: A0A6I6A8D8_9PLAN (Succinate dehydrogenase cytochrome b subunit n=7 Tax=Gimesia TaxID=1649453 RepID=A0A6I6A8D8_9PLAN) HSP 1 Score: 392 bits (1006), Expect = 6.080e-137 Identity = 201/204 (98.53%), Postives = 202/204 (99.02%), Query Frame = 1 Query: 1 SSSIGQKFVMGITGLLLCGFLVVHLAGNLLVYVGADAYNNYAKELHSMMLLPVAETGLFLLLFAHIALAFKLTSDNRKARQITYHEKQSKIQEPPSIFGRTPMGRTSSWMFISGSIILIFLIMHMIDMKLHLNPTVDYKDQSPFGIIVQVLGSGLSAPIYIVGTLVLGFHLSHGFWSAFQSLGLNHPKYTPLIKKLAILFAIVI 612 SSSIGQKFVMGITGLLLCGFLVVHLAGNLLVYVGADAYNNYAKELHSMMLLPVAETGLFLLLFAHIALAFKLTSDNRKARQITYHEKQSKIQEPPSIFGRTPMGRTSSWMFISGSIILIFLIMHMIDMKLHLNPTVDYKDQSP+GIIVQVLGS LSAPIYIVGTLVLGFHLSHGFWSAFQSLGLNHPKYTP IKKLAILFAIVI Sbjct: 29 SSSIGQKFVMGITGLLLCGFLVVHLAGNLLVYVGADAYNNYAKELHSMMLLPVAETGLFLLLFAHIALAFKLTSDNRKARQITYHEKQSKIQEPPSIFGRTPMGRTSSWMFISGSIILIFLIMHMIDMKLHLNPTVDYKDQSPYGIIVQVLGSVLSAPIYIVGTLVLGFHLSHGFWSAFQSLGLNHPKYTPWIKKLAILFAIVI 232
BLAST of mRNA_M-pyrifera_M_contig108323.1772.1 vs. uniprot
Match: A0A518I8B5_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518I8B5_9PLAN) HSP 1 Score: 363 bits (933), Expect = 8.060e-126 Identity = 184/204 (90.20%), Postives = 192/204 (94.12%), Query Frame = 1 Query: 1 SSSIGQKFVMGITGLLLCGFLVVHLAGNLLVYVGADAYNNYAKELHSMMLLPVAETGLFLLLFAHIALAFKLTSDNRKARQITYHEKQSKIQEPPSIFGRTPMGRTSSWMFISGSIILIFLIMHMIDMKLHLNPTVDYKDQSPFGIIVQVLGSGLSAPIYIVGTLVLGFHLSHGFWSAFQSLGLNHPKYTPLIKKLAILFAIVI 612 SSSIGQKFVMGITGLLLC FLVVHLAGNLLVYVGAD+YNNYA ELHSMMLLPVAETGLFLLLF HIALAFKLT DNR+AR I+Y E QSKI+EPPSIFGRTPMGRTSSWMFISGSIIL FL+MHMIDMKLH NPTVDYKD +P+GIIVQVLGS LSAPIYIVGT+VLGFHLSHGFWSAFQSLGLNHPKY PLIKKLAILFAIVI Sbjct: 29 SSSIGQKFVMGITGLLLCSFLVVHLAGNLLVYVGADSYNNYAHELHSMMLLPVAETGLFLLLFVHIALAFKLTRDNREARHISYQETQSKIEEPPSIFGRTPMGRTSSWMFISGSIILAFLVMHMIDMKLHANPTVDYKDATPYGIIVQVLGSSLSAPIYIVGTIVLGFHLSHGFWSAFQSLGLNHPKYMPLIKKLAILFAIVI 232
BLAST of mRNA_M-pyrifera_M_contig108323.1772.1 vs. uniprot
Match: A0A2E2CBF9_9PLAN (Succinate dehydrogenase n=10 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2CBF9_9PLAN) HSP 1 Score: 335 bits (859), Expect = 1.910e-114 Identity = 172/212 (81.13%), Postives = 187/212 (88.21%), Query Frame = 1 Query: 1 SSSIGQKFVMGITGLLLCGFLVVHLAGNLLVYVGADAYNNYAKELHSMMLLPVAETGLFLLLFAHIALAFKLTSDNRKARQITYHEKQSKIQEPPSIFGRTPMGRTSSWMFISGSIILIFLIMHMIDMKLHLNPTVDYK--------DQSPFGIIVQVLGSGLSAPIYIVGTLVLGFHLSHGFWSAFQSLGLNHPKYTPLIKKLAILFAIVI 612 SSS+GQKFVMGITGLLLCGFLVVHLAGNLLVYVGADAYN YA +LHSM+LLPVAE GLFLLLFAHIALAFKLTSDNRKAR I+YHEKQSKI+EPPS FG+TPMGRTSSWMF+SGSIILIFLI+HMIDMKLHLNP V Y + P+ IIVQVLGS SA +YI+GT++LGFHLSHGFWSAFQSLGLNHPKYTP I+K AILFA VI Sbjct: 29 SSSLGQKFVMGITGLLLCGFLVVHLAGNLLVYVGADAYNTYAHDLHSMLLLPVAEVGLFLLLFAHIALAFKLTSDNRKARHISYHEKQSKIEEPPSFFGKTPMGRTSSWMFLSGSIILIFLIVHMIDMKLHLNPAVTYTVETPEGVIEADPYSIIVQVLGSW-SAAVYIIGTIILGFHLSHGFWSAFQSLGLNHPKYTPWIRKFAILFAAVI 239
BLAST of mRNA_M-pyrifera_M_contig108323.1772.1 vs. uniprot
Match: A0A517X288_9PLAN (Uncharacterized protein n=4 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517X288_9PLAN) HSP 1 Score: 319 bits (818), Expect = 7.240e-109 Identity = 162/195 (83.08%), Postives = 172/195 (88.21%), Query Frame = 1 Query: 28 MGITGLLLCGFLVVHLAGNLLVYVGADAYNNYAKELHSMMLLPVAETGLFLLLFAHIALAFKLTSDNRKARQITYHEKQSKIQEPPSIFGRTPMGRTSSWMFISGSIILIFLIMHMIDMKLHLNPTVDYKDQSPFGIIVQVLGSGLSAPIYIVGTLVLGFHLSHGFWSAFQSLGLNHPKYTPLIKKLAILFAIVI 612 MGITGLLLCGFLVVHLAGNLLVYVGA AYNNYA ELHSMMLLPVAE GLFLLLF HIALAFKLT DN++AR I+Y E Q+KIQE PS+F RTPMG TSSWMFISGSIIL FL++HMIDMKL NPTVDY D P+ IIVQVLGS LSAP YIVGT+VLGFHLSHGFWSAFQSLGLNHPKY P IKKLAI+FA VI Sbjct: 1 MGITGLLLCGFLVVHLAGNLLVYVGAKAYNNYAHELHSMMLLPVAEVGLFLLLFVHIALAFKLTRDNQRARHISYRETQTKIQEKPSLFSRTPMGETSSWMFISGSIILGFLVIHMIDMKLQANPTVDYTDAKPYDIIVQVLGSSLSAPFYIVGTIVLGFHLSHGFWSAFQSLGLNHPKYMPWIKKLAIIFAFVI 195
BLAST of mRNA_M-pyrifera_M_contig108323.1772.1 vs. uniprot
Match: A0A7C4LR57_9PLAN (Succinate dehydrogenase cytochrome b subunit n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=A0A7C4LR57_9PLAN) HSP 1 Score: 213 bits (542), Expect = 2.820e-66 Identity = 110/204 (53.92%), Postives = 144/204 (70.59%), Query Frame = 1 Query: 1 SSSIGQKFVMGITGLLLCGFLVVHLAGNLLVYVGADAYNNYAKELHSMMLLPVAETGLFLLLFAHIALAFKLTSDNRKARQITYHEKQSKIQEPPSIFGRTPMGRTSSWMFISGSIILIFLIMHMIDMKLHLNPTVDYKDQSPFGIIVQVLGSGLSAPIYIVGTLVLGFHLSHGFWSAFQSLGLNHPKYTPLIKKLAILFAIVI 612 +SSIG+KFVMG+TGL LCGFLVVHLAGNLL+Y G ++++ YA LH LP+AE GLF L HI LAF ++NR AR Y KQSK ++ + P +WMF+SG+++L FLI+H++DMK P VDY + P+ + V VL + SA +Y++GT +LGFHL+HGF SAFQSLGL+HPKYTPLIK +FA+VI Sbjct: 26 TSSIGRKFVMGLTGLGLCGFLVVHLAGNLLLYAGPESFDRYAHALHEQEWLPLAEAGLFALFLLHIYLAFVTAAENRAARHTGYALKQSKRRD---LVWEWP---AHNWMFLSGAVVLGFLILHLVDMKFEARPDVDYAGKGPYAVTVSVLRNPYSAAVYLLGTAILGFHLAHGFASAFQSLGLSHPKYTPLIKSFGYVFAVVI 223
BLAST of mRNA_M-pyrifera_M_contig108323.1772.1 vs. uniprot
Match: A0A7C2JYZ2_9PLAN (Succinate dehydrogenase cytochrome b subunit n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=A0A7C2JYZ2_9PLAN) HSP 1 Score: 203 bits (516), Expect = 2.080e-62 Identity = 115/204 (56.37%), Postives = 142/204 (69.61%), Query Frame = 1 Query: 4 SSIGQKFVMGITGLLLCGFLVVHLAGNLLVYVGADAYNNYAKELHSMMLLPVAETGLFLLLFAHIALAFKLTSDNRKARQITYHEKQSKIQEPPSIFGRTPMGRTSSWMFISGSIILIFLIMHMIDMKLHLNPTVDYK-DQSPFGIIVQVLGSGLSAPIYIVGTLVLGFHLSHGFWSAFQSLGLNHPKYTPLIKKLAILFAIVI 612 SSIG+K VM TGLLLCGFLVVHLAGNL +Y G A+++YA LH LP+AE GLF+L HI LAF T++NR+ARQ Y +KQSK + T +WMFISG+++L FLI+H+IDMKL L V Y + F V VL + LS +Y++GT+ LGFHL+HGF SAFQSLGL HPKYTPLIK + ILFA+VI Sbjct: 26 SSIGRKAVMAATGLLLCGFLVVHLAGNLKLYAGKTAFDSYAHWLHEQEFLPLAEAGLFVLFLLHIYLAFVTTAENRRARQQAYAQKQSKRTDGVLY--------TWNWMFISGAVVLGFLILHIIDMKLGLRSDVAYGGEHESFKNTVAVLSTPLSRGVYMLGTVFLGFHLAHGFSSAFQSLGLAHPKYTPLIKLVGILFAVVI 221
BLAST of mRNA_M-pyrifera_M_contig108323.1772.1 vs. uniprot
Match: UPI0019BF1E9B (Succinate dehydrogenase cytochrome b subunit n=1 Tax=Candidatus Saccharimonas sp. TaxID=1917697 RepID=UPI0019BF1E9B) HSP 1 Score: 199 bits (507), Expect = 8.490e-61 Identity = 119/209 (56.94%), Postives = 142/209 (67.94%), Query Frame = 1 Query: 1 SSSIGQKFVMGITGLLLCGFLVVHLAGNLLVYVGADAYNNYAKELHSMM-LLPVAETGLFLLLFAHIALAFKLTSDNRKARQITYHEKQSKIQEPPSIFGRTPMGRTSSWMFISGSIILIFLIMHMIDMKLHLNPTVDYKDQ----SPFGIIVQVLGSGLSAPIYIVGTLVLGFHLSHGFWSAFQSLGLNHPKYTPLIKKLAILFAIVI 612 SSSIGQKFVM ITGLLLCGFLVVHL GNLL+++ A+ YN YA LHS LL VAETGLFLL AH+ LAF N ++R Y KQSK +P +P S+WMF SG+I+L F+I+H+IDMK P + Y D+ +P+ V VL + +S YIVG +VLGFHLSHG SAFQSLGLNHPKYTPLIK +FA VI Sbjct: 51 SSSIGQKFVMAITGLLLCGFLVVHLEGNLLLFLSAEKYNAYAHFLHSQEELLMVAETGLFLLFLAHLYLAFATAWGNSQSRLDQYAMKQSK--QPRGNLATSP----SAWMFGSGAIVLGFVILHLIDMKFMARPDIKYLDEHDPNAPYANAVAVLSNPISWVAYIVGAIVLGFHLSHGVSSAFQSLGLNHPKYTPLIKWAGRIFAFVI 253
BLAST of mRNA_M-pyrifera_M_contig108323.1772.1 vs. uniprot
Match: A0A3B1DGK2_9ZZZZ (Succinate dehydrogenase cytochrome b subunit n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1DGK2_9ZZZZ) HSP 1 Score: 189 bits (480), Expect = 3.660e-57 Identity = 100/195 (51.28%), Postives = 131/195 (67.18%), Query Frame = 1 Query: 28 MGITGLLLCGFLVVHLAGNLLVYVGADAYNNYAKELHSM-MLLPVAETGLFLLLFAHIALAFKLTSDNRKARQITYHEKQSKIQEPPSIFGRTPMGRTSSWMFISGSIILIFLIMHMIDMKLHLNPTVDYKDQSPFGIIVQVLGSGLSAPIYIVGTLVLGFHLSHGFWSAFQSLGLNHPKYTPLIKKLAILFAIV 609 MG+TGLLLCGFL VH AGNLL++VGADAYN YA LHS L+ +AE GL +L AH+ LA+ TSDNR AR+ Y EK+SK + I+ P +WMF +GS++L+FLI+H+ D L L P DY+ P+ + +L + +S +Y VGT+ L +HL HG SAFQSLG+NHPKY IK L +FA+V Sbjct: 1 MGLTGLLLCGFLKVHFAGNLLLFVGADAYNQYAHTLHSQEWLIKIAEGGLVILFMAHLYLAYATTSDNRAARKKEYEEKESKQESGTLIYALKP----HNWMFFTGSVVLLFLILHLADFALELRPDFDYEGLQPYDKALMILRNPISFTVYCVGTIALCWHLLHGVASAFQSLGINHPKYNKPIKILGTIFAVV 191
BLAST of mRNA_M-pyrifera_M_contig108323.1772.1 vs. uniprot
Match: A0A518GRS8_9PLAN (Succinate dehydrogenase/Fumarate reductase transmembrane subunit n=3 Tax=Planctopirus TaxID=1649480 RepID=A0A518GRS8_9PLAN) HSP 1 Score: 189 bits (479), Expect = 1.200e-56 Identity = 104/204 (50.98%), Postives = 137/204 (67.16%), Query Frame = 1 Query: 1 SSSIGQKFVMGITGLLLCGFLVVHLAGNLLVYVGADAYNNYAKELHSMMLLPVAETGLFLLLFAHIALAFKLTSDNRKARQITYHEKQSKIQEPPSIFGRTPMGRTSSWMFISGSIILIFLIMHMIDMKLHLNPTVDYKDQSPFGIIVQVLGSGLSAPIYIVGTLVLGFHLSHGFWSAFQSLGLNHPKYTPLIKKLAILFAIVI 612 +SSIG+KF+MG+TGLLLCGFLV HLAGN L++ G +N YA+ +H LLP+ E GL LL AHI LAF T +NRKAR Y K+SK + T +WMFISGSIIL FL++H++D+++ + P Y D S + +Q + + + YIVG ++LGFHL+HGF SAFQSLGL HPKY+ LI K +I+F I I Sbjct: 26 TSSIGRKFIMGVTGLLLCGFLVGHLAGNFLLFKGEKDFNEYAEWIHHQKLLPLIELGLLLLFLAHIYLAFVTTFENRKARDQKYVVKESKQ------YDLTLPIPAHNWMFISGSIILGFLLLHLVDLRIGIRPDFVYTD-SAYANTMQAISNPIGRIAYIVGPIILGFHLAHGFASAFQSLGLTHPKYSGLIYKFSIVFGIAI 222
BLAST of mRNA_M-pyrifera_M_contig108323.1772.1 vs. uniprot
Match: UPI0012F7C32B (succinate dehydrogenase cytochrome b subunit n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=UPI0012F7C32B) HSP 1 Score: 187 bits (476), Expect = 1.820e-56 Identity = 109/209 (52.15%), Postives = 138/209 (66.03%), Query Frame = 1 Query: 1 SSSIGQKFVMGITGLLLCGFLVVHLAGNLLVYVGADAYNNYAKELHSMM-LLPVAETGLFLLLFAHIALAFKLTSDNRKARQITYHEKQSKIQEPPSIFGRTPMGRTSSWMFISGSIILIFLIMHMIDMKLHLNPTVDYKDQS----PFGIIVQVLGSGLSAPIYIVGTLVLGFHLSHGFWSAFQSLGLNHPKYTPLIKKLAILFAIVI 612 SSSIGQKFVMG+TGL L GF+V HLAGNLL++VGAD YN YA LH+ LL +AE GL +L AH+ LA + N +R Y KQ+KI P + G +SWMF SG+++L FLI+H+IDM+ L + Y +S P+ + VL S +S IY VG +VLG HLSHGF SAFQS+GLNHPKY PLIK + + A+VI Sbjct: 26 SSSIGQKFVMGVTGLFLTGFVVAHLAGNLLLFVGADEYNEYAHALHNQKELLIIAEVGLLVLFVAHVYLAVATSIGNTTSRNSQYVMKQTKI--PGRVIG------ANSWMFASGAVVLGFLILHLIDMRFGLRGDLKYLAESDPNAPYHNTMVVLNSPISRVIYFVGVVVLGVHLSHGFQSAFQSIGLNHPKYMPLIKVIGKILAVVI 226 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108323.1772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig108323.1772.1 >prot_M-pyrifera_M_contig108323.1772.1 ID=prot_M-pyrifera_M_contig108323.1772.1|Name=mRNA_M-pyrifera_M_contig108323.1772.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=195bp MGITGLLLCGFLVVHLAGNLLVYVGADAYNNYAKELHSMMLLPVAETGLFback to top mRNA from alignment at M-pyrifera_M_contig108323:2..613+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig108323.1772.1 ID=mRNA_M-pyrifera_M_contig108323.1772.1|Name=mRNA_M-pyrifera_M_contig108323.1772.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig108323:2..613+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig108323:2..613+ >mRNA_M-pyrifera_M_contig108323.1772.1 ID=mRNA_M-pyrifera_M_contig108323.1772.1|Name=mRNA_M-pyrifera_M_contig108323.1772.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1170bp|location=Sequence derived from alignment at M-pyrifera_M_contig108323:2..613+ (Macrocystis pyrifera P11B4 male)back to top |