mRNA_M-pyrifera_M_contig108316.1771.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108316.1771.1
Unique NamemRNA_M-pyrifera_M_contig108316.1771.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig108316.1771.1 vs. uniprot
Match: M7XXH5_9BACT (OMP_b-brl_2 domain-containing protein n=2 Tax=Mariniradius TaxID=1245590 RepID=M7XXH5_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 7.240e-8
Identity = 45/126 (35.71%), Postives = 64/126 (50.79%), Query Frame = 1
Query:   10 VEVEVSTDELNNLSKTPEFDLRKNNIFLEEIVIGEKSLLMHIDKNSKPLFYYQDGTEAKLLYYKKYKENKS----TSFKVLYNEAFIQQLSSYLEIDQASMEYDVNSMTTAYLNYYETNSLSPLFQ 375
            VE EVS+   N L  T   +  +  +FL+ ++ GEKSL ++++  SK  FY +DG    LL YKKY   K     T   V  N+ +  QLS YL+ D  SM+    S+       Y+  SL  LF+
Sbjct:   90 VETEVSSSNTNQLDNTARLETIQEQVFLQTLIKGEKSLYLNVNSFSKENFYIKDGDRFLLLTYKKYNAEKLEGGYTRSYVAENKMYQGQLSVYLQ-DCPSMKKATQSVL------YKKESLKRLFE 208          
BLAST of mRNA_M-pyrifera_M_contig108316.1771.1 vs. uniprot
Match: A0A1M7NNS9_9FLAO (Outer membrane protein beta-barrel domain-containing protein n=1 Tax=Polaribacter sp. KT 15 TaxID=1896175 RepID=A0A1M7NNS9_9FLAO)

HSP 1 Score: 58.5 bits (140), Expect = 1.820e-7
Identity = 39/131 (29.77%), Postives = 66/131 (50.38%), Query Frame = 1
Query:   10 VEVEVSTDELNNLSKTPEFDLRKNNIFLEEIVIGEKSLLMHIDKNSKPLFYYQDGTEAKLLYYKKYKENKSTSFKVLYNEAFIQQL------SSYLEIDQASMEYDVNSMTTAYLNYYETNSLSPLFQKKE 384
            V+++ S+D L NLSK     L K  +FL+ +V GE +L  +++KN K  FY ++ ++ +LL YK YK       ++  N  F QQ+      SS+       ++Y+   +   ++ Y   N+ SP     E
Sbjct:   86 VDIDKSSDNLENLSKNKRAILEKETLFLKVLVEGETTLYQYLNKNLKRYFYSKNNSKIELLIYKTYKVGS----RLAENNRFKQQIWKDLKCSSFKLNKIEKLKYEQKELIDYFIEYNNCNNSSPAINYNE 212          
BLAST of mRNA_M-pyrifera_M_contig108316.1771.1 vs. uniprot
Match: A0A2R7NI48_9FLAO (Uncharacterized protein (Fragment) n=1 Tax=Chryseobacterium sp. HMWF028 TaxID=2056862 RepID=A0A2R7NI48_9FLAO)

HSP 1 Score: 55.5 bits (132), Expect = 2.020e-6
Identity = 38/120 (31.67%), Postives = 65/120 (54.17%), Query Frame = 1
Query:   13 EVEVSTDELNNLSKTPEFDLRKNNIFLEEIVIGEKSLLMHIDKNSKPLFYYQDGTEAKLLYYKKYKENKSTSFKVLYNEAFIQQLSSYLEIDQASMEYDVNSMTTAYLNYYETNSLSPLF 372
            +++ S+D L++LS + E +L+K+ +FL+E+V G+K+L  +  +N +  FY    +    L YKKY  N S+S +V  N+ +I QL +    D        N+   A    Y T+ L  +F
Sbjct:    9 DIDYSSDNLDDLSNSKEPELKKDIVFLKELVNGKKNLYFYQKQNFERYFYSDSDSSIHPLTYKKYYFNGSSS-QVATNDEYINQLKTIFSDD-------ANAKVLAAKTKYTTSDLKKIF 120          
BLAST of mRNA_M-pyrifera_M_contig108316.1771.1 vs. uniprot
Match: A0A0H4PKP0_9BACT (N-acetylmuramoyl-L-alanine amidase n=3 Tax=Cyclobacterium TaxID=68288 RepID=A0A0H4PKP0_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 2.200e-6
Identity = 42/131 (32.06%), Postives = 69/131 (52.67%), Query Frame = 1
Query:   10 VEVEVSTDELNNLSKTPEFDLRKNNIFLEEIVIGEKSLLMHIDKNSKPLFYYQDGTEAKLLYYKKYKENKSTSFKVLYNEAFIQQLSSYL--------EIDQASMEYDVNSMTTAYLNYYETNSLSPLFQK 378
            VE EV+ + +   S++    +R + IFL+ +V+GEKSLL  +  + K  +Y ++G    LL YK Y   ++       NE + +QL+SYL         ++ AS  YD  S+ + ++ YYE     P F+K
Sbjct:  101 VEKEVTKNTVYVHSESSALQVRMDTIFLQTLVLGEKSLL-GMKSSGKENYYIKEGNSYTLLKYKWYLVEQNGKELKAENETYKRQLASYLGDCLYMTATLEGAS--YDSKSLESIFMKYYECKDGLPAFKK 228          
BLAST of mRNA_M-pyrifera_M_contig108316.1771.1 vs. uniprot
Match: UPI001F32EBCD (PorT family protein n=1 Tax=Aequorivita sp. F47161 TaxID=2874475 RepID=UPI001F32EBCD)

HSP 1 Score: 53.5 bits (127), Expect = 1.020e-5
Identity = 41/132 (31.06%), Postives = 67/132 (50.76%), Query Frame = 1
Query:   10 VEVEVSTDELNNLSKTPEFDLRKNNIFLEEIVIGEKSLLMHIDKNSKPLFYYQDGTEAKLLYYKKYKENKSTSFKVLYNEAFIQQLSSYLEIDQAS------MEYDVNSMTTAYLNYYET-NSLSPLFQKKE 384
            VE++ STD +NNL      DL++  IFL+ +V G+ SL   ++ ++   FY +D    + L YK+Y     T  K+  N+ + QQL++ L     +      +EY  NS+      Y    NS S +F+K +
Sbjct:   86 VEIDQSTDVVNNLKFDRNPDLKEETIFLKTLVEGKASLYFTLNSDTPRYFYSKDNGTIEQLIYKRY---LVTRLKMGTNDRYKQQLATNLNCSDLTEKSFENLEYKTNSLINIITKYNSCHNSESVVFKKNK 214          
BLAST of mRNA_M-pyrifera_M_contig108316.1771.1 vs. uniprot
Match: UPI001E45EB9F (hypothetical protein n=3 Tax=Mangrovimonas TaxID=1211036 RepID=UPI001E45EB9F)

HSP 1 Score: 52.4 bits (124), Expect = 2.570e-5
Identity = 35/118 (29.66%), Postives = 60/118 (50.85%), Query Frame = 1
Query:   10 VEVEVSTDELNNLSKTPEFDLRKNNIFLEEIVIGEKSLLMHIDKNSKPLFYYQ-DGTEAKLLYYKKYKENKSTSFKVLYNEAFIQQLSSYLEIDQA------SMEYDVNSMTTAYLNY 342
            V++++S+D L+NLS   E      N+FL+ +V G+  L    +K+    +++  DG E   L YK+Y  +K   F   YN+ F +Q+ S L           S+EY+   +T  ++ Y
Sbjct:   85 VQIDISSDHLDNLSLQREPKFETKNLFLKTLVSGKAHLFQFTEKDGLSKYFFSLDGGETTQLIYKRYVNDKREIF---YNKDFREQIYSQLTCGSKMLEMVRSIEYNSKDLTKVFIGY 199          
BLAST of mRNA_M-pyrifera_M_contig108316.1771.1 vs. uniprot
Match: UPI001CC9A60B (PorT family protein n=1 Tax=Psychroflexus sp. CCL10W TaxID=2873598 RepID=UPI001CC9A60B)

HSP 1 Score: 52.0 bits (123), Expect = 3.510e-5
Identity = 41/137 (29.93%), Postives = 75/137 (54.74%), Query Frame = 1
Query:    7 YVEVEVSTDELNNL--SKTPEFDLRKNNIFLEEIVIGEKSLLMHIDKNSKPLFYYQDGTEAKLLYYKKYKENKSTSFKVLYNEAFIQQLSSYLEIDQ------ASMEY---DVNSMTTAYLNYYETNSLSPLFQKKE 384
            +++ ++S D+++ L  S+ P FD  K ++FL+ IV G+ SL  H    +   +Y ++G+  K+L YKKY  N +   K+  N  F QQL + L+ D+      AS++Y   D+  + + Y   ++  + S   QK++
Sbjct:   85 FIDTDISRDDMSRLNNSRLPIFD--KKHLFLKVIVEGKASLYKHSSTYNTRYYYEKNGSNLKMLIYKKYLNNDN---KIDENNNFRQQLLNNLKCDELSKSQFASLKYTEKDLRKIISKYNACFDHETYSFHEQKRK 216          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108316.1771.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
M7XXH5_9BACT7.240e-835.71OMP_b-brl_2 domain-containing protein n=2 Tax=Mari... [more]
A0A1M7NNS9_9FLAO1.820e-729.77Outer membrane protein beta-barrel domain-containi... [more]
A0A2R7NI48_9FLAO2.020e-631.67Uncharacterized protein (Fragment) n=1 Tax=Chryseo... [more]
A0A0H4PKP0_9BACT2.200e-632.06N-acetylmuramoyl-L-alanine amidase n=3 Tax=Cycloba... [more]
UPI001F32EBCD1.020e-531.06PorT family protein n=1 Tax=Aequorivita sp. F47161... [more]
UPI001E45EB9F2.570e-529.66hypothetical protein n=3 Tax=Mangrovimonas TaxID=1... [more]
UPI001CC9A60B3.510e-529.93PorT family protein n=1 Tax=Psychroflexus sp. CCL1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108316contigM-pyrifera_M_contig108316:230..613 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score63.5
Seed ortholog evalue8e-08
Seed eggNOG ortholog1239962.C943_00479
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cell adhesion
EggNOG OGsCOG3468@1,COG3468@2
COG Functional cat.MU
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size384
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815593.0877092-CDS-M-pyrifera_M_contig108316:229..6131622815593.0877092-CDS-M-pyrifera_M_contig108316:229..613Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108316 230..613 -
1692277478.6598253-CDS-M-pyrifera_M_contig108316:229..6131692277478.6598253-CDS-M-pyrifera_M_contig108316:229..613Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108316 230..613 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108316.1771.1prot_M-pyrifera_M_contig108316.1771.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108316 230..613 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108316.1771.1

>prot_M-pyrifera_M_contig108316.1771.1 ID=prot_M-pyrifera_M_contig108316.1771.1|Name=mRNA_M-pyrifera_M_contig108316.1771.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=128bp
TGYVEVEVSTDELNNLSKTPEFDLRKNNIFLEEIVIGEKSLLMHIDKNSK
PLFYYQDGTEAKLLYYKKYKENKSTSFKVLYNEAFIQQLSSYLEIDQASM
EYDVNSMTTAYLNYYETNSLSPLFQKKE
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mRNA from alignment at M-pyrifera_M_contig108316:230..613-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108316.1771.1 ID=mRNA_M-pyrifera_M_contig108316.1771.1|Name=mRNA_M-pyrifera_M_contig108316.1771.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig108316:230..613- (Macrocystis pyrifera P11B4 male)
ACAGGCTATGTTGAGGTTGAGGTAAGTACTGATGAACTAAATAACCTAAG TAAAACACCTGAATTTGACCTTCGTAAAAACAATATATTCCTGGAAGAAA TTGTCATAGGAGAAAAGAGCTTGCTCATGCACATTGACAAAAATAGCAAA CCCCTTTTCTACTATCAGGACGGAACTGAAGCAAAGCTACTCTACTATAA AAAGTACAAAGAAAATAAATCAACTAGTTTTAAGGTTCTGTACAATGAGG CGTTTATTCAACAGTTGTCATCTTATCTCGAAATCGATCAGGCTTCGATG GAATATGATGTCAACAGTATGACTACGGCATATCTCAACTATTATGAAAC CAACAGTCTTTCGCCTTTGTTTCAAAAAAAGGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108316:230..613-

>mRNA_M-pyrifera_M_contig108316.1771.1 ID=mRNA_M-pyrifera_M_contig108316.1771.1|Name=mRNA_M-pyrifera_M_contig108316.1771.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig108316:230..613- (Macrocystis pyrifera P11B4 male)
ACAGGCTATGTTGAGGTTGAGGTAAGTACTGATGAACTAAATAACCTAAG
TAAAACACCTGAATTTGACCTTCGTAAAAACAATATATTCCTGGAAGAAA
TTGTCATAGGAGAAAAGAGCTTGCTCATGCACATTGACAAAAATAGCAAA
CCCCTTTTCTACTATCAGGACGGAACTGAAGCAAAGCTACTCTACTATAA
AAAGTACAAAGAAAATAAATCAACTAGTTTTAAGGTTCTGTACAATGAGG
CGTTTATTCAACAGTTGTCATCTTATCTCGAAATCGATCAGGCTTCGATG
GAATATGATGTCAACAGTATGACTACGGCATATCTCAACTATTATGAAAC
CAACAGTCTTTCGCCTTTGTTTCAAAAAAAGGAAACAGGCTATGTTGAGG
TTGAGGTAAGTACTGATGAACTAAATAACCTAAGTAAAACACCTGAATTT
GACCTTCGTAAAAACAATATATTCCTGGAAGAAATTGTCATAGGAGAAAA
GAGCTTGCTCATGCACATTGACAAAAATAGCAAACCCCTTTTCTACTATC
AGGACGGAACTGAAGCAAAGCTACTCTACTATAAAAAGTACAAAGAAAAT
AAATCAACTAGTTTTAAGGTTCTGTACAATGAGGCGTTTATTCAACAGTT
GTCATCTTATCTCGAAATCGATCAGGCTTCGATGGAATATGATGTCAACA
GTATGACTACGGCATATCTCAACTATTATGAAACCAACAGTCTTTCGCCT
TTGTTTCAAAAAAAGGAA
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