mRNA_M-pyrifera_M_contig108316.1770.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108316.1770.1
Unique NamemRNA_M-pyrifera_M_contig108316.1770.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig108316.1770.1 vs. uniprot
Match: A0A2E9GAG4_9RHOB (Uncharacterized protein n=1 Tax=Thalassobius sp. TaxID=1979401 RepID=A0A2E9GAG4_9RHOB)

HSP 1 Score: 58.9 bits (141), Expect = 1.960e-8
Identity = 26/56 (46.43%), Postives = 40/56 (71.43%), Query Frame = 1
Query:   49 NYQSGYIVQNSGDTVRGGLDYQDWIRNPEFIRFKNSWLSDEVAVYRILEIKSFGLE 216
            N+QSGY++QNSGDT++G +D + W RNPE I FKNS  +     + + +IK+F ++
Sbjct:   23 NFQSGYVIQNSGDTLKGEIDNKFWRRNPENITFKNS--NGITQTFGVNDIKAFQVD 76          
BLAST of mRNA_M-pyrifera_M_contig108316.1770.1 vs. uniprot
Match: A0A4U6DD29_9BACT (Uncharacterized protein n=1 Tax=Dyadobacter frigoris TaxID=2576211 RepID=A0A4U6DD29_9BACT)

HSP 1 Score: 58.2 bits (139), Expect = 3.650e-8
Identity = 25/63 (39.68%), Postives = 38/63 (60.32%), Query Frame = 1
Query:   19 TSLEQLSLYPNYQSGYIVQNSGDTVRGGLDYQDWIRNPEFIRFKNSWLSDEVAVYRILEIKSF 207
            T  + +S   NY+SG+++ N  DT+RG +DY++W +NPE I FK    +D V  Y   +I  F
Sbjct:   15 TLFQSVSAQKNYESGFVIINQRDTLRGFIDYKNWSKNPEKINFKTILEADVVTTYGTDDISGF 77          
BLAST of mRNA_M-pyrifera_M_contig108316.1770.1 vs. uniprot
Match: A0A2E9GAI7_9RHOB (OMP_b-brl_2 domain-containing protein n=1 Tax=Thalassobius sp. TaxID=1979401 RepID=A0A2E9GAI7_9RHOB)

HSP 1 Score: 56.6 bits (135), Expect = 1.280e-7
Identity = 24/56 (42.86%), Postives = 38/56 (67.86%), Query Frame = 1
Query:   49 NYQSGYIVQNSGDTVRGGLDYQDWIRNPEFIRFKNSWLSDEVAVYRILEIKSFGLE 216
            N+Q GY++QNSGDT+RG +D ++W RNPE I FK   + + +    + +I+ F +E
Sbjct:   22 NFQPGYVIQNSGDTLRGEIDNKNWRRNPETITFKT--IDNNIKSLGVNDIQEFQVE 75          
BLAST of mRNA_M-pyrifera_M_contig108316.1770.1 vs. uniprot
Match: UPI001BE132B9 (outer membrane beta-barrel protein n=1 Tax=Dyadobacter sp. CECT 9275 TaxID=2822344 RepID=UPI001BE132B9)

HSP 1 Score: 56.2 bits (134), Expect = 1.750e-7
Identity = 23/57 (40.35%), Postives = 41/57 (71.93%), Query Frame = 1
Query:   49 NYQSGYIVQNSGDTVRGGLDYQDWIRNPEFIRFKNSWLSDEVAVYRILEIKSFGLED 219
            N+Q GY++  +GDT++G +DY++W+ NP+ I FK + +S E +V+ + EIK F + +
Sbjct:   24 NFQPGYMISYTGDTLKGFIDYRNWVINPDQIAFKKTPVS-EASVHLVEEIKGFSVNN 79          
BLAST of mRNA_M-pyrifera_M_contig108316.1770.1 vs. uniprot
Match: A0A2I0D428_9FLAO (Uncharacterized protein n=3 Tax=Psychroflexus TaxID=83612 RepID=A0A2I0D428_9FLAO)

HSP 1 Score: 53.5 bits (127), Expect = 1.570e-6
Identity = 23/57 (40.35%), Postives = 39/57 (68.42%), Query Frame = 1
Query:   49 NYQSGYIVQNSGDTVRGGLDYQDWIRNPEFIRFKNSWLSDEVAVYRILEIKSFGLED 219
            NY  GYI++ + DT+ G +D++DW + P  I+FK+S  ++ + V+  L+I  FG+ED
Sbjct:   25 NYLPGYIIKKNKDTINGIIDFRDWDKTPNEIKFKSSNTNNPI-VFNPLDIIEFGVED 80          
BLAST of mRNA_M-pyrifera_M_contig108316.1770.1 vs. uniprot
Match: UPI001E49FEF5 (PorT family protein n=1 Tax=Mucilaginibacter roseus TaxID=1528868 RepID=UPI001E49FEF5)

HSP 1 Score: 53.1 bits (126), Expect = 2.150e-6
Identity = 23/56 (41.07%), Postives = 37/56 (66.07%), Query Frame = 1
Query:   49 NYQSGYIVQNSGDTVRGGLDYQDWIRNPEFIRFKNSWLSDEVAVYRILEIKSFGLE 216
            N++ GYIV+N+GDT+RG +D ++W  NPE+I FK +   D    Y+   + SF ++
Sbjct:   21 NFKDGYIVKNTGDTIRGKIDLREWNINPEYIDFKAA--DDTSQRYKPANVSSFYVQ 74          
BLAST of mRNA_M-pyrifera_M_contig108316.1770.1 vs. uniprot
Match: A0A4Q6DUL1_9SPHI (Uncharacterized protein (Fragment) n=1 Tax=Sphingobacteriaceae bacterium TaxID=2021370 RepID=A0A4Q6DUL1_9SPHI)

HSP 1 Score: 52.0 bits (123), Expect = 5.170e-6
Identity = 25/56 (44.64%), Postives = 34/56 (60.71%), Query Frame = 1
Query:   49 NYQSGYIVQNSGDTVRGGLDYQDWIRNPEFIRFKNSWLSDEVAVYRILEIKSFGLE 216
            N+Q GYIV  SGDTV G +DY++W  +PE I FKN  +   +  Y   +I  F +E
Sbjct:   22 NFQKGYIVNLSGDTVPGAIDYREWAGSPEKILFKN--VDGTMVSYTNKQISYFEIE 75          
BLAST of mRNA_M-pyrifera_M_contig108316.1770.1 vs. uniprot
Match: A0A4Q5QUB7_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Chitinophagaceae bacterium TaxID=1869212 RepID=A0A4Q5QUB7_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 5.430e-6
Identity = 21/56 (37.50%), Postives = 33/56 (58.93%), Query Frame = 1
Query:   46 PNYQSGYIVQNSGDTVRGGLDYQDWIRNPEFIRFKNSWLSDEVAVYRILEIKSFGL 213
            P+Y+ G++V NSGDT +G +DY+ W RNP+ I FK          + I ++  F +
Sbjct:   24 PSYREGFVVDNSGDTSKGWIDYRQWERNPKTISFKKDLSLTTSTQFTIDDLTYFSI 79          
BLAST of mRNA_M-pyrifera_M_contig108316.1770.1 vs. uniprot
Match: A0A1G7FRP8_9SPHI (Uncharacterized protein n=1 Tax=Mucilaginibacter pineti TaxID=1391627 RepID=A0A1G7FRP8_9SPHI)

HSP 1 Score: 51.6 bits (122), Expect = 7.500e-6
Identity = 23/68 (33.82%), Postives = 40/68 (58.82%), Query Frame = 1
Query:   16 STSLEQLSLYPNYQSGYIVQNSGDTVRGGLDYQDWIRNPEFIRFKNSWLSDEVAVYRILEIKSFGLED 219
            S S+  L    NY+ GYI+ N+ DT++G ++Y++W +NP+ I+FK    +  V  Y +  I  F + +
Sbjct:   11 SLSISLLHAQSNYKPGYIINNNKDTLKGFINYREWSKNPQSIKFKPGTDAQPVN-YTVNNINEFAVSN 77          
BLAST of mRNA_M-pyrifera_M_contig108316.1770.1 vs. uniprot
Match: UPI00131E9A8B (hypothetical protein n=1 Tax=Mucilaginibacter sp. L196 TaxID=1641870 RepID=UPI00131E9A8B)

HSP 1 Score: 51.2 bits (121), Expect = 1.030e-5
Identity = 21/54 (38.89%), Postives = 35/54 (64.81%), Query Frame = 1
Query:   49 NYQSGYIVQNSGDTVRGGLDYQDWIRNPEFIRFKNSWLSDEVAVYRILEIKSFG 210
            NY+ GY+V   GDT++G +DY++WI+NP  + FK    +++ + Y I    +FG
Sbjct:   23 NYKPGYVVTLKGDTLKGYIDYKEWIQNPRGVNFKTDAGANQTS-YSINNCSAFG 75          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108316.1770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A2E9GAG4_9RHOB1.960e-846.43Uncharacterized protein n=1 Tax=Thalassobius sp. T... [more]
A0A4U6DD29_9BACT3.650e-839.68Uncharacterized protein n=1 Tax=Dyadobacter frigor... [more]
A0A2E9GAI7_9RHOB1.280e-742.86OMP_b-brl_2 domain-containing protein n=1 Tax=Thal... [more]
UPI001BE132B91.750e-740.35outer membrane beta-barrel protein n=1 Tax=Dyadoba... [more]
A0A2I0D428_9FLAO1.570e-640.35Uncharacterized protein n=3 Tax=Psychroflexus TaxI... [more]
UPI001E49FEF52.150e-641.07PorT family protein n=1 Tax=Mucilaginibacter roseu... [more]
A0A4Q6DUL1_9SPHI5.170e-644.64Uncharacterized protein (Fragment) n=1 Tax=Sphingo... [more]
A0A4Q5QUB7_9BACT5.430e-637.50Uncharacterized protein (Fragment) n=1 Tax=Chitino... [more]
A0A1G7FRP8_9SPHI7.500e-633.82Uncharacterized protein n=1 Tax=Mucilaginibacter p... [more]
UPI00131E9A8B1.030e-538.89hypothetical protein n=1 Tax=Mucilaginibacter sp. ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108316contigM-pyrifera_M_contig108316:2..220 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size219
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815593.0500033-CDS-M-pyrifera_M_contig108316:1..2201622815593.0500033-CDS-M-pyrifera_M_contig108316:1..220Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108316 2..220 -
1692277478.6489525-CDS-M-pyrifera_M_contig108316:1..2201692277478.6489525-CDS-M-pyrifera_M_contig108316:1..220Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108316 2..220 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108316.1770.1prot_M-pyrifera_M_contig108316.1770.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108316 2..220 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108316.1770.1

>prot_M-pyrifera_M_contig108316.1770.1 ID=prot_M-pyrifera_M_contig108316.1770.1|Name=mRNA_M-pyrifera_M_contig108316.1770.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=73bp
VITKESTSLEQLSLYPNYQSGYIVQNSGDTVRGGLDYQDWIRNPEFIRFK
NSWLSDEVAVYRILEIKSFGLED
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mRNA from alignment at M-pyrifera_M_contig108316:2..220-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108316.1770.1 ID=mRNA_M-pyrifera_M_contig108316.1770.1|Name=mRNA_M-pyrifera_M_contig108316.1770.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=219bp|location=Sequence derived from alignment at M-pyrifera_M_contig108316:2..220- (Macrocystis pyrifera P11B4 male)
GTTATTACGAAAGAATCAACTTCACTTGAGCAATTGAGTTTATATCCCAA TTATCAATCCGGCTATATTGTTCAAAATAGTGGAGATACCGTTCGAGGCG GATTGGATTACCAGGACTGGATCAGAAATCCTGAATTTATTAGATTTAAG AATTCTTGGTTGAGCGATGAGGTTGCAGTCTACCGCATACTGGAGATTAA GTCTTTTGGGCTAGAAGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108316:2..220-

>mRNA_M-pyrifera_M_contig108316.1770.1 ID=mRNA_M-pyrifera_M_contig108316.1770.1|Name=mRNA_M-pyrifera_M_contig108316.1770.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig108316:2..220- (Macrocystis pyrifera P11B4 male)
GTTATTACGAAAGAATCAACTTCACTTGAGCAATTGAGTTTATATCCCAA
TTATCAATCCGGCTATATTGTTCAAAATAGTGGAGATACCGTTCGAGGCG
GATTGGATTACCAGGACTGGATCAGAAATCCTGAATTTATTAGATTTAAG
AATTCTTGGTTGAGCGATGAGGTTGCAGTCTACCGCATACTGGAGATTAA
GTCTTTTGGGCTAGAAGATGTTATTACGAAAGAATCAACTTCACTTGAGC
AATTGAGTTTATATCCCAATTATCAATCCGGCTATATTGTTCAAAATAGT
GGAGATACCGTTCGAGGCGGATTGGATTACCAGGACTGGATCAGAAATCC
TGAATTTATTAGATTTAAGAATTCTTGGTTGAGCGATGAGGTTGCAGTCT
ACCGCATACTGGAGATTAAGTCTTTTGGGCTAGAAGAT
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