mRNA_M-pyrifera_M_contig108290.1765.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108290.1765.1
Unique NamemRNA_M-pyrifera_M_contig108290.1765.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig108290.1765.1 vs. uniprot
Match: A0A7S2UUZ3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUZ3_9STRA)

HSP 1 Score: 131 bits (330), Expect = 2.780e-36
Identity = 61/76 (80.26%), Postives = 72/76 (94.74%), Query Frame = 1
Query:    4 VAWEEVKVVQNLIERCLQQYMTQTEIVTALQVQANVEPAFTCLVWQKLEEQNPDFFYAYNIRLRLRDQIVAFNYLV 231
            ++W ++K+VQ LIERCLQQYMTQ EI+TALQVQANV+P+FTCLVWQKLEEQNP+FFY Y+IRLRL+DQIVAFNYLV
Sbjct:   18 ISWNDIKMVQALIERCLQQYMTQPEIITALQVQANVDPSFTCLVWQKLEEQNPEFFYTYSIRLRLKDQIVAFNYLV 93          
BLAST of mRNA_M-pyrifera_M_contig108290.1765.1 vs. uniprot
Match: D7G7H7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7H7_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 4.260e-33
Identity = 56/76 (73.68%), Postives = 72/76 (94.74%), Query Frame = 1
Query:    4 VAWEEVKVVQNLIERCLQQYMTQTEIVTALQVQANVEPAFTCLVWQKLEEQNPDFFYAYNIRLRLRDQIVAFNYLV 231
            V+W ++K VQNLIERCLQ++MTQTEI+ ALQV+ANV+P+FTCLVWQKLE+QNP+FF++Y+ RL++RDQIVAFNYLV
Sbjct:   79 VSWNDIKSVQNLIERCLQKFMTQTEIIAALQVEANVDPSFTCLVWQKLEQQNPEFFFSYHARLKMRDQIVAFNYLV 154          
BLAST of mRNA_M-pyrifera_M_contig108290.1765.1 vs. uniprot
Match: A0A7S3ZKS9_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZKS9_9STRA)

HSP 1 Score: 116 bits (290), Expect = 4.970e-32
Identity = 53/74 (71.62%), Postives = 64/74 (86.49%), Query Frame = 1
Query:   10 WEEVKVVQNLIERCLQQYMTQTEIVTALQVQANVEPAFTCLVWQKLEEQNPDFFYAYNIRLRLRDQIVAFNYLV 231
            W +VK VQNLIERCL QYMTQ E++  LQVQA+V+PA TCLVW KLEE NPDFF +Y++RL+L+DQ+VAFNYLV
Sbjct:   12 WTQVKSVQNLIERCLNQYMTQAEVIATLQVQADVDPALTCLVWSKLEEANPDFFLSYDVRLKLKDQVVAFNYLV 85          
BLAST of mRNA_M-pyrifera_M_contig108290.1765.1 vs. uniprot
Match: A0A6H5LJM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJM5_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 9.210e-32
Identity = 56/76 (73.68%), Postives = 72/76 (94.74%), Query Frame = 1
Query:    4 VAWEEVKVVQNLIERCLQQYMTQTEIVTALQVQANVEPAFTCLVWQKLEEQNPDFFYAYNIRLRLRDQIVAFNYLV 231
            V+W ++K VQNLIERCLQ++MTQTEI+ ALQV+ANV+P+FTCLVWQKLE+QNP+FF++Y+ RL++RDQIVAFNYLV
Sbjct:   80 VSWNDIKSVQNLIERCLQKFMTQTEIIAALQVEANVDPSFTCLVWQKLEQQNPEFFFSYHARLKMRDQIVAFNYLV 155          
BLAST of mRNA_M-pyrifera_M_contig108290.1765.1 vs. uniprot
Match: A0A835YZS3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZS3_9STRA)

HSP 1 Score: 114 bits (284), Expect = 3.340e-29
Identity = 49/76 (64.47%), Postives = 66/76 (86.84%), Query Frame = 1
Query:    4 VAWEEVKVVQNLIERCLQQYMTQTEIVTALQVQANVEPAFTCLVWQKLEEQNPDFFYAYNIRLRLRDQIVAFNYLV 231
            V W+++K+VQ LIERCL Q+MTQ+++V  L  QAN++P+FTCLVWQKLEEQNP+FFY Y +R+ +RDQI++FNYLV
Sbjct:   30 VKWDDIKMVQTLIERCLNQFMTQSQVVATLVQQANIDPSFTCLVWQKLEEQNPEFFYTYGVRVTMRDQILSFNYLV 105          
BLAST of mRNA_M-pyrifera_M_contig108290.1765.1 vs. uniprot
Match: W4FQM2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FQM2_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.010e-28
Identity = 51/77 (66.23%), Postives = 62/77 (80.52%), Query Frame = 1
Query:    4 VAWEEVKVVQNLIERCLQQYMTQTEIVTALQVQANVEPAFTCLVWQKLEEQNPDFFYAYNIRLRLRDQIVAFNYLVR 234
            ++W E+  VQNLIERCLQQ M+Q +I+ ALQ QANV+P FTC VWQKLEEQNP FF AY + L L++QI+ FNYLVR
Sbjct:   28 LSWNEILRVQNLIERCLQQSMSQADIINALQAQANVDPHFTCTVWQKLEEQNPSFFEAYTLHLTLKEQILTFNYLVR 104          
BLAST of mRNA_M-pyrifera_M_contig108290.1765.1 vs. uniprot
Match: W4FSG8_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FSG8_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.990e-27
Identity = 50/76 (65.79%), Postives = 61/76 (80.26%), Query Frame = 1
Query:    4 VAWEEVKVVQNLIERCLQQYMTQTEIVTALQVQANVEPAFTCLVWQKLEEQNPDFFYAYNIRLRLRDQIVAFNYLV 231
            ++W E+  VQNLIERCLQQ M+Q +I+ ALQ QANV+P FTC VWQKLEEQNP FF AY + L L++QI+ FNYLV
Sbjct:   28 LSWNEILRVQNLIERCLQQSMSQADIINALQAQANVDPHFTCTVWQKLEEQNPSFFEAYTLHLTLKEQILTFNYLV 103          
BLAST of mRNA_M-pyrifera_M_contig108290.1765.1 vs. uniprot
Match: A0A7S2SS41_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SS41_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.930e-27
Identity = 48/75 (64.00%), Postives = 63/75 (84.00%), Query Frame = 1
Query:    4 VAWEEVKVVQNLIERCLQQYMTQTEIVTALQVQANVEPAFTCLVWQKLEEQNPDFFYAYNIRLRLRDQIVAFNYL 228
            V W+EV+ VQ LIE C+++YMTQ EI++ L  +A V+P+ TCLVW+KLEEQN DFFYAYN+ LR++DQ+VAFNYL
Sbjct:   97 VPWDEVQHVQGLIEHCMKEYMTQAEIISLLHAKAGVQPSLTCLVWKKLEEQNRDFFYAYNVMLRVKDQMVAFNYL 171          
BLAST of mRNA_M-pyrifera_M_contig108290.1765.1 vs. uniprot
Match: A0A067BEL9_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BEL9_SAPPC)

HSP 1 Score: 105 bits (261), Expect = 5.090e-27
Identity = 50/74 (67.57%), Postives = 61/74 (82.43%), Query Frame = 1
Query:   10 WEEVKVVQNLIERCLQQYMTQTEIVTALQVQANVEPAFTCLVWQKLEEQNPDFFYAYNIRLRLRDQIVAFNYLV 231
            W E+  VQNLIERCLQQ M+QT+I++ LQ QANV+P FT  VWQKLEEQNP FF+AY   L+L++QI+AFNYLV
Sbjct:   21 WNEILRVQNLIERCLQQCMSQTDIISTLQTQANVDPTFTRTVWQKLEEQNPSFFHAYTAHLQLKEQILAFNYLV 94          
BLAST of mRNA_M-pyrifera_M_contig108290.1765.1 vs. uniprot
Match: A0A7S1CEG6_9STRA (Hypothetical protein (Fragment) n=2 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CEG6_9STRA)

HSP 1 Score: 104 bits (259), Expect = 6.080e-27
Identity = 49/66 (74.24%), Postives = 57/66 (86.36%), Query Frame = 1
Query:   31 QNLIERCLQQYMTQTEIVTALQVQANVEPAFTCLVWQKLEEQNPDFFYAYNIRLRLRDQIVAFNYL 228
            QNLIE CL+ +MTQTE+V ALQ++A+VEP  TCLVWQKLE QNP FFY YN+RLRL+DQI AFNYL
Sbjct:   51 QNLIEVCLKSHMTQTEVVAALQMRASVEPELTCLVWQKLEAQNPQFFYVYNLRLRLKDQIQAFNYL 116          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108290.1765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2UUZ3_9STRA2.780e-3680.26Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D7G7H7_ECTSI4.260e-3373.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3ZKS9_9STRA4.970e-3271.62Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A6H5LJM5_9PHAE9.210e-3273.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YZS3_9STRA3.340e-2964.47Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W4FQM2_9STRA1.010e-2866.23Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
W4FSG8_9STRA1.990e-2765.79Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
A0A7S2SS41_9STRA2.930e-2764.00Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A067BEL9_SAPPC5.090e-2767.57Uncharacterized protein n=2 Tax=Saprolegnia parasi... [more]
A0A7S1CEG6_9STRA6.080e-2774.24Hypothetical protein (Fragment) n=2 Tax=Bicosoecid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108290contigM-pyrifera_M_contig108290:259..606 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.2
Seed ortholog evalue1.4e-26
Seed eggNOG ortholog2880.D7G7H7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Plant protein 1589 of unknown function (A_thal_3526)
EggNOG OGs28IH3@1,2QQTW@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815592.8087256-CDS-M-pyrifera_M_contig108290:258..3301622815592.8087256-CDS-M-pyrifera_M_contig108290:258..330Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108290 259..330 +
1692277478.526448-CDS-M-pyrifera_M_contig108290:258..3301692277478.526448-CDS-M-pyrifera_M_contig108290:258..330Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108290 259..330 +
1622815592.8217301-CDS-M-pyrifera_M_contig108290:435..6061622815592.8217301-CDS-M-pyrifera_M_contig108290:435..606Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108290 436..606 +
1692277478.5418792-CDS-M-pyrifera_M_contig108290:435..6061692277478.5418792-CDS-M-pyrifera_M_contig108290:435..606Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108290 436..606 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108290.1765.1prot_M-pyrifera_M_contig108290.1765.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108290 259..606 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108290.1765.1

>prot_M-pyrifera_M_contig108290.1765.1 ID=prot_M-pyrifera_M_contig108290.1765.1|Name=mRNA_M-pyrifera_M_contig108290.1765.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=81bp
EVAWEEVKVVQNLIERCLQQYMTQTEIVTALQVQANVEPAFTCLVWQKLE
EQNPDFFYAYNIRLRLRDQIVAFNYLVRLSV
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mRNA from alignment at M-pyrifera_M_contig108290:259..606+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108290.1765.1 ID=mRNA_M-pyrifera_M_contig108290.1765.1|Name=mRNA_M-pyrifera_M_contig108290.1765.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig108290:259..606+ (Macrocystis pyrifera P11B4 male)
GAGGTGGCGTGGGAGGAGGTGAAGGTGGTGCAGAACCTCATCGAGCGTTG TCTGCAGCAGTACATGACGCAGGTGCGGTTTCCCGGCGCCGGCCGCTTGC GTATCGCGTGGAGCGGTGCTGATAATTGTGCTATGTGTGCGAGTGCATGT GTCTGATGCGGTGCAACGGCGGTGCAGACTGAGATTGTGACGGCGTTGCA AGTGCAAGCGAATGTGGAGCCGGCGTTCACGTGTTTGGTGTGGCAGAAGC TGGAGGAGCAGAACCCGGACTTCTTCTATGCGTACAACATCCGTCTGAGA CTGCGAGACCAGATTGTGGCATTCAACTACCTGGTACGCCTCTCCGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108290:259..606+

>mRNA_M-pyrifera_M_contig108290.1765.1 ID=mRNA_M-pyrifera_M_contig108290.1765.1|Name=mRNA_M-pyrifera_M_contig108290.1765.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig108290:259..606+ (Macrocystis pyrifera P11B4 male)
GAGGTGGCGTGGGAGGAGGTGAAGGTGGTGCAGAACCTCATCGAGCGTTG
TCTGCAGCAGTACATGACGCAGGAGGTGGCGTGGGAGGAGGTGAAGGTGG
TGCAGAACCTCATCGAGCGTTGTCTGCAGCAGTACATGACGCAGACTGAG
ATTGTGACGGCGTTGCAAGTGCAAGCGAATGTGGAGCCGGCGTTCACGTG
TTTGGTGTGGCAGAAGCTGGAGGAGCAGAACCCGGACTTCTTCTATGCGT
ACAACATCCGTCTGAGACTGCGAGACCAGATTGTGGCATTCAACTACCTG
GTACGCCTCTCCGTCACTGAGATTGTGACGGCGTTGCAAGTGCAAGCGAA
TGTGGAGCCGGCGTTCACGTGTTTGGTGTGGCAGAAGCTGGAGGAGCAGA
ACCCGGACTTCTTCTATGCGTACAACATCCGTCTGAGACTGCGAGACCAG
ATTGTGGCATTCAACTACCTGGTACGCCTCTCCGTC
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