mRNA_M-pyrifera_M_contig108288.1764.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108288.1764.1
Unique NamemRNA_M-pyrifera_M_contig108288.1764.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig108288.1764.1 vs. uniprot
Match: A0A1V9YZD4_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YZD4_9STRA)

HSP 1 Score: 128 bits (322), Expect = 7.450e-33
Identity = 74/142 (52.11%), Postives = 99/142 (69.72%), Query Frame = 1
Query:    1 LLGNPVVKKIPNYRKSLIHRLPQLRYLDDRPVFDDERLRAEAFMRALEESGGDVDSARAAERAEIVRQREEKRDKEERNFRAFEEMIRDARAKA-RGADSLADGEEETKGVERSTFSGEEIVEAEDSTIVRDARLKRWADTV 423
            L GN VVK I  YRK++I+R  +LRYLDDRPVFD+ER R  A+ RA+EE+ GD+++A  AERAE+   R+EK+DK+E NFR FEEM+R  +A+  R    L D + E   V  + +SGE+I+E ED  +VR AR  RWA+ V
Sbjct:  168 LQGNDVVKHIKQYRKTIIYRCKELRYLDDRPVFDEERRRVTAWGRAMEETNGDLEAALEAERAELAVIRQEKKDKDEANFRYFEEMMRKGKAERDRKERELHDNQREEVAV--NPYSGEKIIEVEDCALVRQAREHRWAEAV 307          
BLAST of mRNA_M-pyrifera_M_contig108288.1764.1 vs. uniprot
Match: A0A024TEQ5_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TEQ5_9STRA)

HSP 1 Score: 128 bits (321), Expect = 1.260e-32
Identity = 72/141 (51.06%), Postives = 98/141 (69.50%), Query Frame = 1
Query:    1 LLGNPVVKKIPNYRKSLIHRLPQLRYLDDRPVFDDERLRAEAFMRALEESGGDVDSARAAERAEIVRQREEKRDKEERNFRAFEEMIRDARAKARGADSLADGEEETKGVERSTFSGEEIVEAEDSTIVRDARLKRWADTV 423
            L GN VVK I  YRK+++ R   LRYLDDRPVFDDER R  A+ +ALEE+ GD+++A  AER E+   R+EK+DK+E NFR FEE++R  +A+        + E+  +  ERS +SGE+I+ AED  +VR+AR +RWAD V
Sbjct:  167 LQGNDVVKHIKQYRKTVVARCKNLRYLDDRPVFDDERRRVNAWYKALEETNGDMEAALQAERDELAVIRQEKKDKDEANFRYFEEIMRQGKAER----DRREKEQNNQLDERSPYSGEKILPAEDCKLVREARERRWADVV 303          
BLAST of mRNA_M-pyrifera_M_contig108288.1764.1 vs. uniprot
Match: T0QTZ5_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QTZ5_SAPDV)

HSP 1 Score: 127 bits (319), Expect = 2.140e-32
Identity = 74/142 (52.11%), Postives = 98/142 (69.01%), Query Frame = 1
Query:    1 LLGNPVVKKIPNYRKSLIHRLPQLRYLDDRPVFDDERLRAEAFMRALEESGGDVDSARAAERAEIVRQREEKRDKEERNFRAFEEMIRDARA-KARGADSLADGEEETKGVERSTFSGEEIVEAEDSTIVRDARLKRWADTV 423
            L GN VVK I +YRK++I R  +LRYLDDRPVFD+ER R  A+ R +EE+ GDVD+A  AERAE+   R+EK+DK+E NFR FE+M+R  +A + R    L D + E    E S +SGE+I+  ED  +V +AR +RWAD V
Sbjct:  168 LQGNDVVKHIKHYRKTIISRCKELRYLDDRPVFDEERRRVTAWGRVMEETNGDVDAALEAERAELALIRQEKKDKDEANFRYFEDMMRAGKAERERRERELHDNQREA---EVSPYSGEKILHVEDCAMVHEARERRWADVV 306          
BLAST of mRNA_M-pyrifera_M_contig108288.1764.1 vs. uniprot
Match: A0A485KC60_9STRA (Aste57867_4075 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KC60_9STRA)

HSP 1 Score: 124 bits (311), Expect = 3.410e-31
Identity = 68/141 (48.23%), Postives = 98/141 (69.50%), Query Frame = 1
Query:    1 LLGNPVVKKIPNYRKSLIHRLPQLRYLDDRPVFDDERLRAEAFMRALEESGGDVDSARAAERAEIVRQREEKRDKEERNFRAFEEMIRDARAKARGADSLADGEEETKGVERSTFSGEEIVEAEDSTIVRDARLKRWADTV 423
            L GN VVK I  YRK+++ R  QLRYLDDRPVFD+ER R +A+ +ALEE+ GD+++A  AER E+   R+EK+DK+E NFR FEE++R  +A+    ++ ++ +     +E S +SGE+I+  ED  +VR AR +RWA  V
Sbjct:  167 LQGNDVVKHIKQYRKTVVARCKQLRYLDDRPVFDEERRRVDAWYKALEETNGDMEAALQAERDELAVIRQEKKDKDEANFRYFEEIMRKGKAERDRREAESNNQANNDQIEISPYSGEKILPVEDCKLVRVARERRWAAVV 307          
BLAST of mRNA_M-pyrifera_M_contig108288.1764.1 vs. uniprot
Match: A0A6A5AAK2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AAK2_9STRA)

HSP 1 Score: 120 bits (302), Expect = 2.070e-30
Identity = 69/136 (50.74%), Postives = 94/136 (69.12%), Query Frame = 1
Query:   16 VVKKIPNYRKSLIHRLPQLRYLDDRPVFDDERLRAEAFMRALEESGGDVDSARAAERAEIVRQREEKRDKEERNFRAFEEMIRDARAKARGADSLADGEEETKGVERSTFSGEEIVEAEDSTIVRDARLKRWADTV 423
            VVK I  YRK+++ R   LRYLDDRPVFDDER R  A+ + LE++ GD+D+A  AER E+   R+EK+DK+E NFR FEE++R  +A+    +S  + ++ET     S +SGE+IV AED  +VRDAR +RWA  V
Sbjct:  179 VVKHIKQYRKTVVARCKNLRYLDDRPVFDDERRRVNAWYKVLEDTNGDMDAALQAERDELAVIRQEKKDKDEANFRYFEEIMRKGKAERDRRESSNNQQDET-----SPYSGEKIVPAEDCKLVRDARERRWAAVV 309          
BLAST of mRNA_M-pyrifera_M_contig108288.1764.1 vs. uniprot
Match: A0A1W0A833_9STRA (Fructose-bisphosphate aldolase (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A833_9STRA)

HSP 1 Score: 121 bits (303), Expect = 3.390e-29
Identity = 65/139 (46.76%), Postives = 97/139 (69.78%), Query Frame = 1
Query:    7 GNPVVKKIPNYRKSLIHRLPQLRYLDDRPVFDDERLRAEAFMRALEESGGDVDSARAAERAEIVRQREEKRDKEERNFRAFEEMIRDARAKARGADSLADGEEETKGVERSTFSGEEIVEAEDSTIVRDARLKRWADTV 423
            GN VVK I +YRK++I +   LRYLDDRPVFD+ER R  A+  A+EE+ G++++A  AER E+ + R+EK+DK+E NFR FEEM+R+ +A+    +      ++  G+  S +SGE+I++ +D  +VR AR +RWAD V
Sbjct:  497 GNDVVKHIKHYRKTIISKCKGLRYLDDRPVFDEERRRVTAWGLAMEETNGNIEAALEAERVELAKIRQEKKDKDEANFRYFEEMMRNGKAENERRERELQDNQKDLGI--SPYSGEKILDVQDCALVRQARERRWADVV 633          
BLAST of mRNA_M-pyrifera_M_contig108288.1764.1 vs. uniprot
Match: A0A397EJM6_9STRA (Uncharacterized protein n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397EJM6_9STRA)

HSP 1 Score: 119 bits (297), Expect = 4.040e-29
Identity = 69/141 (48.94%), Postives = 93/141 (65.96%), Query Frame = 1
Query:    1 LLGNPVVKKIPNYRKSLIHRLPQLRYLDDRPVFDDERLRAEAFMRALEESGGDVDSARAAERAEIVRQREEKRDKEERNFRAFEEMIRDARAKARGADSLADGEEETKGVERSTFSGEEIVEAEDSTIVRDARLKRWADTV 423
            L GN VVK I  YRK+++ R   LRYLDDRPVFDDER R  A+ + LE++ GD+D+A  AER E+   R+EK+DK+E NFR FEE++R  +A+    +S  + ++E          GE+IV AED  +VRDAR +RWA  V
Sbjct:  165 LQGNDVVKHIKQYRKTVVARCKNLRYLDDRPVFDDERRRVNAWYKVLEDTNGDMDAALQAERDELAVIRQEKKDKDEANFRYFEEIMRKGKAERDRRESSNNQQDEVLET-ADCIVGEKIVPAEDCKLVRDARERRWAAVV 304          
BLAST of mRNA_M-pyrifera_M_contig108288.1764.1 vs. uniprot
Match: A0A6G0WDQ5_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WDQ5_9STRA)

HSP 1 Score: 113 bits (283), Expect = 2.760e-27
Identity = 69/141 (48.94%), Postives = 95/141 (67.38%), Query Frame = 1
Query:    1 LLGNPVVKKIPNYRKSLIHRLPQLRYLDDRPVFDDERLRAEAFMRALEESGGDVDSARAAERAEIVRQREEKRDKEERNFRAFEEMIRDARAKARGADSLADGEEETKGVERSTFSGEEIVEAEDSTIVRDARLKRWADTV 423
            L GN VVK I  YRK++I R   LRYLDDRPVFDDER R  A+ +ALEE+ G++++A  AER E+   R+EK+DK+E NFR FEE++R  +A+ R    L    E     + + +SGE+I+ A+D  +VR+ R +RWAD V
Sbjct:  167 LQGNDVVKHIKQYRKTVIARCKNLRYLDDRPVFDDERRRVTAWYKALEETNGNMEAALQAERDELSLIRKEKKDKDEANFRHFEEIMRKGKAE-RDRFRL----ECIMRCKVNPYSGEKIIPAQDCKLVREVRERRWADVV 302          
BLAST of mRNA_M-pyrifera_M_contig108288.1764.1 vs. uniprot
Match: A0A8K1CJQ4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CJQ4_PYTOL)

HSP 1 Score: 110 bits (274), Expect = 1.370e-25
Identity = 65/142 (45.77%), Postives = 95/142 (66.90%), Query Frame = 1
Query:    1 LLGNPVVKKIPNYRKSLIHRLPQLRYLDDRPVFDDERLRAEAFMRALEESGGDVDSARAAERAEIVRQREEKRDKEERNFRAFEEMIRDARAKARGADS-LADGEEETKGVERSTFSGEEIVEAEDSTIVRDARLKRWADTV 423
            L GN VVK I  YRK++I+R  +L+YLDDRPVFD+ER R EA+ +ALE + GD  +A+ AER E+ R R+EKRD++ +NF  FEEM+ + R K +  ++  A  E++ +  E + FSGE+IV  +D   ++  R +RW   V
Sbjct:  168 LQGNDVVKHIKQYRKTMIYRCRKLKYLDDRPVFDEERRRVEAWGQALEAANGDYKAAQEAEREEMDRIRQEKRDRDHQNFLMFEEMMAEGRRKRQEDEADKAKREKQEETPEINPFSGEKIVPIQDYEFLQRQREQRWEQVV 309          
BLAST of mRNA_M-pyrifera_M_contig108288.1764.1 vs. uniprot
Match: A0A0P1AKH6_PLAHL (Low quality protein: dynein assembly factor axonemal n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AKH6_PLAHL)

HSP 1 Score: 108 bits (271), Expect = 4.590e-25
Identity = 64/144 (44.44%), Postives = 96/144 (66.67%), Query Frame = 1
Query:    1 LLGNPVVKKIPNYRKSLIHRLPQLRYLDDRPVFDDERLRAEAFMRALEESGGDVDSARAAERAEIVRQREEKRDKEERNFRAFEEMIRDARAKARGAD---SLADGEEETKGVERSTFSGEEIVEAEDSTIVRDARLKRWADTV 423
            L GN VVK I  YRK++I+R  +L+YLDDRPVFDDER R EA+ +ALE S GD+  A+ AER E+   R EK+++++RNF  FE+M+ + R K +  +   S+A+  E+ +  E + FSGE+++  +D  +++  R KRW   V
Sbjct:  167 LQGNEVVKHIKQYRKTMIYRCRKLKYLDDRPVFDDERRRVEAWGKALEASSGDMKLAQEAERREMDAIRREKKERDDRNFLYFEQMMIEGRRKRQEDEKRRSIAETPEQ-RTEEFNIFSGEKVIPVQDCALLQQEREKRWESVV 309          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108288.1764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1V9YZD4_9STRA7.450e-3352.11Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A024TEQ5_9STRA1.260e-3251.06Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
T0QTZ5_SAPDV2.140e-3252.11Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A485KC60_9STRA3.410e-3148.23Aste57867_4075 protein n=1 Tax=Aphanomyces stellat... [more]
A0A6A5AAK2_9STRA2.070e-3050.74Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A1W0A833_9STRA3.390e-2946.76Fructose-bisphosphate aldolase (Fragment) n=1 Tax=... [more]
A0A397EJM6_9STRA4.040e-2948.94Uncharacterized protein n=9 Tax=Aphanomyces astaci... [more]
A0A6G0WDQ5_9STRA2.760e-2748.94Uncharacterized protein n=2 Tax=Aphanomyces euteic... [more]
A0A8K1CJQ4_PYTOL1.370e-2545.77Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0P1AKH6_PLAHL4.590e-2544.44Low quality protein: dynein assembly factor axonem... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108288contigM-pyrifera_M_contig108288:130..612 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.4
Seed ortholog evalue1.3e-27
Seed eggNOG ortholog157072.XP_008879459.1
Preferred nameODA7
KEGG koko:K19750
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001578,GO:0003341,GO:0003352,GO:0003356,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008104,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032879,GO:0032886,GO:0033036,GO:0033365,GO:0034613,GO:0034622,GO:0035082,GO:0040012,GO:0040017,GO:0043933,GO:0044085,GO:0044297,GO:0044424,GO:0044464,GO:0044782,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051179,GO:0051270,GO:0051272,GO:0051641,GO:0060271,GO:0060632,GO:0065003,GO:0065007,GO:0070286,GO:0070727,GO:0070925,GO:0071840,GO:0120031,GO:0120036,GO:1902019,GO:2000145,GO:2000147,GO:2000155
EggNOG free text desc.dynein complex binding
EggNOG OGs2CMIN@1,2QQFE@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons2
Model size423
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815592.7641716-CDS-M-pyrifera_M_contig108288:129..2271622815592.7641716-CDS-M-pyrifera_M_contig108288:129..227Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108288 130..227 -
1692277478.5018206-CDS-M-pyrifera_M_contig108288:129..2271692277478.5018206-CDS-M-pyrifera_M_contig108288:129..227Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108288 130..227 -
1622815592.7746003-CDS-M-pyrifera_M_contig108288:287..6121622815592.7746003-CDS-M-pyrifera_M_contig108288:287..612Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108288 288..612 -
1692277478.5143583-CDS-M-pyrifera_M_contig108288:287..6121692277478.5143583-CDS-M-pyrifera_M_contig108288:287..612Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108288 288..612 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108288.1764.1prot_M-pyrifera_M_contig108288.1764.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108288 130..612 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108288.1764.1

>prot_M-pyrifera_M_contig108288.1764.1 ID=prot_M-pyrifera_M_contig108288.1764.1|Name=mRNA_M-pyrifera_M_contig108288.1764.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=141bp
LLGNPVVKKIPNYRKSLIHRLPQLRYLDDRPVFDDERLRAEAFMRALEES
GGDVDSARAAERAEIVRQREEKRDKEERNFRAFEEMIRDARAKARGADSL
ADGEEETKGVERSTFSGEEIVEAEDSTIVRDARLKRWADTV
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mRNA from alignment at M-pyrifera_M_contig108288:130..612-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108288.1764.1 ID=mRNA_M-pyrifera_M_contig108288.1764.1|Name=mRNA_M-pyrifera_M_contig108288.1764.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=483bp|location=Sequence derived from alignment at M-pyrifera_M_contig108288:130..612- (Macrocystis pyrifera P11B4 male)
CTGCTGGGCAACCCCGTGGTGAAGAAAATCCCAAACTACCGCAAGTCTCT CATCCACCGGCTGCCACAGCTGCGCTACCTGGACGACCGCCCCGTGTTCG ACGACGAGCGCCTGCGTGCCGAGGCGTTCATGCGCGCGCTGGAGGAGAGC GGCGGCGACGTCGACTCGGCGAGGGCCGCAGAACGCGCCGAGATCGTTCG GCAGCGCGAGGAGAAACGCGACAAGGAAGAGCGGAACTTCCGCGCGTTCG AGGAGATGATCAGAGACGCACGGGCAAAGGCGCGTGGCGCTGACTCCCTC GCGGACGGCGAGGAGGAGACCAAGGGTGAAGACGGCGTGGTCGTCGGCGG CGGCGGCGGCAGCGGCGGCGAAGGTGGTGAAGGAGGTGTAGAGCGATCCA CGTTCAGTGGAGAGGAGATCGTGGAGGCAGAAGACTCGACCATTGTGCGC GACGCGCGGCTGAAGCGGTGGGCGGACACCGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108288:130..612-

>mRNA_M-pyrifera_M_contig108288.1764.1 ID=mRNA_M-pyrifera_M_contig108288.1764.1|Name=mRNA_M-pyrifera_M_contig108288.1764.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=846bp|location=Sequence derived from alignment at M-pyrifera_M_contig108288:130..612- (Macrocystis pyrifera P11B4 male)
CTGCTGGGCAACCCCGTGGTGAAGAAAATCCCAAACTACCGCAAGTCTCT
CATCCACCGGCTGCCACAGCTGCGCTACCTGGACGACCGCCCCGTGTTCG
ACGACGAGCGCCTGCGTGCCGAGGCGTTCATGCGCGCGCTGGAGGAGAGC
GGCGGCGACGTCGACTCGGCGAGGGCCGCAGAACGCGCCGAGATCGTTCG
GCAGCGCGAGGAGAAACGCGACAAGGAAGAGCGGAACTTCCGCGCGTTCG
AGGAGATGATCAGAGACGCACGGGCAAAGGCGCGTGGCGCTGACTCCCTC
GCGGACGGCGAGGAGGAGACCAAGGCTGCTGGGCAACCCCGTGGTGAAGA
AAATCCCAAACTACCGCAAGTCTCTCATCCACCGGCTGCCACAGCTGCGC
TACCTGGACGACCGCCCCGTGTTCGACGACGAGCGCCTGCGTGCCGAGGC
GTTCATGCGCGCGCTGGAGGAGAGCGGCGGCGACGTCGACTCGGCGAGGG
CCGCAGAACGCGCCGAGATCGTTCGGCAGCGCGAGGAGAAACGCGACAAG
GAAGAGCGGAACTTCCGCGCGTTCGAGGAGATGATCAGAGACGCACGGGC
AAAGGCGCGTGGCGCTGACTCCCTCGCGGACGGCGAGGAGGAGACCAAGG
GTGTAGAGCGATCCACGTTCAGTGGAGAGGAGATCGTGGAGGCAGAAGAC
TCGACCATTGTGCGCGACGCGCGGCTGAAGCGGTGGGCGGACACCGTGGT
GTAGAGCGATCCACGTTCAGTGGAGAGGAGATCGTGGAGGCAGAAGACTC
GACCATTGTGCGCGACGCGCGGCTGAAGCGGTGGGCGGACACCGTG
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