mRNA_M-pyrifera_M_contig108286.1763.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108286.1763.1
Unique NamemRNA_M-pyrifera_M_contig108286.1763.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig108286.1763.1 vs. uniprot
Match: A0A7V3CGF7_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V3CGF7_9DELT)

HSP 1 Score: 53.1 bits (126), Expect = 2.100e-5
Identity = 41/118 (34.75%), Postives = 65/118 (55.08%), Query Frame = 1 
Query:  127 GGALYTLMTDILVRDSFFYENKA---------HKGGAISAMQASNMVV--------RNCSISGNSASSRGGGIHLSGSLSLEASTVSGNTAP-EGGGVYSGWSSVFNSLLSTVSGNTA 426
            GG +     D+ + +S   +N+A         H+GG    +  + +++        +N ++SGNSA + GGGI+    L +++STVSGNTA  +GGG+Y G+ S+     STVSGN A
Sbjct:  198 GGGINNFGADLTLNNSQVTQNQAEELTGGGISHQGGCFKCVNTALLLLNPGGLLTLQNTTVSGNSAVA-GGGIYNEAELVMDSSTVSGNTAGNDGGGIYGGFGSLALITNSTVSGNQA 314
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BLAST of mRNA_M-pyrifera_M_contig108286.1763.1 vs. uniprot
Match: A0A3A0CM24_9BACT (PA14 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3A0CM24_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 3.640e-5
Identity = 39/103 (37.86%), Postives = 56/103 (54.37%), Query Frame = 1 
Query:   88 IANCSFVRNQARGGGAL-----YTLMTDILVRDSFFYENKAHKGGAISAMQASNMVVRNCSISGNSA-SSRGGGIHLS---GSLSLEASTVSGNTAPEGGGVY 369
            I  C+F+ N +  GGAL     +      ++  +F   +    GG I  +  S  VVR C+ISGNSA + +GGGI+ S   G+  +EA T++ N A EGGG Y
Sbjct:  174 IDQCTFIGNASLHGGALAYHGDFGNQKCTILNSTFTGNSATGNGGGIHFIARSEFVVRQCTISGNSAPTGQGGGIYNSRAYGASIVEACTIAFNLAAEGGGYY 276
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108286.1763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7V3CGF7_9DELT2.100e-534.75Uncharacterized protein (Fragment) n=1 Tax=Deltapr... [more]
A0A3A0CM24_9BACT3.640e-537.86PA14 domain-containing protein n=1 Tax=Planctomyce... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108286contigM-pyrifera_M_contig108286:122..556 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size435
Cds size435
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815592.7312398-CDS-M-pyrifera_M_contig108286:121..5561622815592.7312398-CDS-M-pyrifera_M_contig108286:121..556Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108286 122..556 -
1692277478.476732-CDS-M-pyrifera_M_contig108286:121..5561692277478.476732-CDS-M-pyrifera_M_contig108286:121..556Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108286 122..556 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108286.1763.1prot_M-pyrifera_M_contig108286.1763.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108286 122..556 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108286.1763.1

>prot_M-pyrifera_M_contig108286.1763.1 ID=prot_M-pyrifera_M_contig108286.1763.1|Name=mRNA_M-pyrifera_M_contig108286.1763.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=145bp
SVTNCTFADNNSAADPFHTLYLEHLESATIANCSFVRNQARGGGALYTLM
TDILVRDSFFYENKAHKGGAISAMQASNMVVRNCSISGNSASSRGGGIHL
SGSLSLEASTVSGNTAPEGGGVYSGWSSVFNSLLSTVSGNTAESG
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mRNA from alignment at M-pyrifera_M_contig108286:122..556-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108286.1763.1 ID=mRNA_M-pyrifera_M_contig108286.1763.1|Name=mRNA_M-pyrifera_M_contig108286.1763.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=435bp|location=Sequence derived from alignment at M-pyrifera_M_contig108286:122..556- (Macrocystis pyrifera P11B4 male)
TCGGTCACCAACTGTACCTTCGCGGATAACAACTCCGCAGCTGACCCTTT
TCATACTCTGTACTTGGAACACCTCGAGTCTGCCACGATCGCCAACTGCT
CTTTCGTGAGGAACCAAGCACGGGGCGGCGGCGCTTTGTACACTTTGATG
ACCGATATTCTCGTCAGGGACTCGTTCTTCTACGAGAACAAGGCCCACAA
GGGTGGGGCCATTTCTGCCATGCAGGCTTCCAACATGGTCGTCCGCAACT
GCTCCATCTCTGGCAACAGTGCCTCCTCTCGGGGCGGCGGCATCCATTTG
AGTGGTTCCCTCAGCCTCGAGGCCAGCACTGTCTCCGGTAACACTGCACC
AGAGGGCGGAGGTGTATACTCTGGCTGGTCTTCAGTTTTCAACTCACTCC
TCTCAACGGTCTCTGGGAACACAGCGGAGAGCGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108286:122..556-

>mRNA_M-pyrifera_M_contig108286.1763.1 ID=mRNA_M-pyrifera_M_contig108286.1763.1|Name=mRNA_M-pyrifera_M_contig108286.1763.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=870bp|location=Sequence derived from alignment at M-pyrifera_M_contig108286:122..556- (Macrocystis pyrifera P11B4 male)
TCGGTCACCAACTGTACCTTCGCGGATAACAACTCCGCAGCTGACCCTTT
TCATACTCTGTACTTGGAACACCTCGAGTCTGCCACGATCGCCAACTGCT
CTTTCGTGAGGAACCAAGCACGGGGCGGCGGCGCTTTGTACACTTTGATG
ACCGATATTCTCGTCAGGGACTCGTTCTTCTACGAGAACAAGGCCCACAA
GGGTGGGGCCATTTCTGCCATGCAGGCTTCCAACATGGTCGTCCGCAACT
GCTCCATCTCTGGCAACAGTGCCTCCTCTCGGGGCGGCGGCATCCATTTG
AGTGGTTCCCTCAGCCTCGAGGCCAGCACTGTCTCCGGTAACACTGCACC
AGAGGGCGGAGGTGTATACTCTGGCTGGTCTTCAGTTTTCAACTCACTCC
TCTCAACGGTCTCTGGGAACACAGCGGAGAGCGGATCGGTCACCAACTGT
ACCTTCGCGGATAACAACTCCGCAGCTGACCCTTTTCATACTCTGTACTT
GGAACACCTCGAGTCTGCCACGATCGCCAACTGCTCTTTCGTGAGGAACC
AAGCACGGGGCGGCGGCGCTTTGTACACTTTGATGACCGATATTCTCGTC
AGGGACTCGTTCTTCTACGAGAACAAGGCCCACAAGGGTGGGGCCATTTC
TGCCATGCAGGCTTCCAACATGGTCGTCCGCAACTGCTCCATCTCTGGCA
ACAGTGCCTCCTCTCGGGGCGGCGGCATCCATTTGAGTGGTTCCCTCAGC
CTCGAGGCCAGCACTGTCTCCGGTAACACTGCACCAGAGGGCGGAGGTGT
ATACTCTGGCTGGTCTTCAGTTTTCAACTCACTCCTCTCAACGGTCTCTG
GGAACACAGCGGAGAGCGGA
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